Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,884,953 G→T A756D (GCC→GAC)  cas3 ← CRISPR‑associated endonuclease/helicase Cas3

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,884,9530GT100.0% 353.4 / NA 98A756D (GCC→GAC) cas3CRISPR‑associated endonuclease/helicase Cas3
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (52/46);  total (52/46)

TTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGGCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGCTCCATTAAGCTCCTCAATATGT  >  NC_000913/2884816‑2885087
                                                                                                                                         |                                                                                                                                      
tttGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACtcgtcg                                                                                                                                      >  2:1307015/1‑140 (MQ=255)
    tACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCttt                                                                                                                                  <  2:668688/140‑1 (MQ=255)
           ggCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGTCTTGAACCTTTTTTCACACTCGTCGCTTTCAAAttt                                                                                                                           >  2:1258105/1‑140 (MQ=255)
           ggCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAAttt                                                                                                                           >  1:515182/1‑140 (MQ=255)
           ggCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAAttt                                                                                                                           >  1:975546/1‑140 (MQ=255)
           ggCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAAttt                                                                                                                           >  2:561962/1‑140 (MQ=255)
              aataatGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATc                                                                                                                        >  2:1451636/1‑140 (MQ=255)
              aataatGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATc                                                                                                                        <  1:283479/140‑1 (MQ=255)
              aataatGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATc                                                                                                                        >  2:829768/1‑140 (MQ=255)
              aataatGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATc                                                                                                                        >  2:589949/1‑140 (MQ=255)
                taatGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCa                                                                                                                      >  1:64094/1‑140 (MQ=255)
                     gCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCa                                                                                                                 >  2:630702/1‑140 (MQ=255)
                       aGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCAtt                                                                                                               >  1:426060/1‑140 (MQ=255)
                          cTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGcc                                                                                                            >  1:1317750/1‑140 (MQ=255)
                          cTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGcc                                                                                                            >  2:473246/1‑140 (MQ=255)
                          cTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATACTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCa                                                                                                                      <  2:409658/130‑1 (MQ=255)
                          cTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATACTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCa                                                                                                                      >  1:409658/1‑130 (MQ=255)
                             aTTTCCCCATGCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGAc                                                                                                         <  1:1595081/140‑1 (MQ=255)
                             aTTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGAc                                                                                                         <  1:1243664/140‑1 (MQ=255)
                                  cccATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCAtt                                                                                                    <  2:426060/140‑1 (MQ=255)
                                     aTCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCTATTCTg                                                                                                 >  1:1680850/1‑140 (MQ=255)
                                     aTCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTg                                                                                                 <  2:168351/140‑1 (MQ=255)
                                        ccTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCt                                                                                              <  1:820138/140‑1 (MQ=255)
                                            gTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTgg                                                                                                >  1:740578/1‑134 (MQ=255)
                                            gTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTgg                                                                                                <  2:740578/134‑1 (MQ=255)
                                            gTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATc                                                                                          <  2:978780/140‑1 (MQ=255)
                                                 cGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAGTTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCAttt                                                                                     >  2:1110689/1‑140 (MQ=255)
                                                 cGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCAttt                                                                                     >  2:1154497/1‑140 (MQ=255)
                                                 cGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCAttt                                                                                     >  2:17856/1‑140 (MQ=255)
                                                 cGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCAttt                                                                                     >  2:1444474/1‑140 (MQ=255)
                                                  gCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTc                                                                                    >  1:1194214/1‑140 (MQ=255)
                                                       aaTGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGcat                                                                               <  1:1307015/140‑1 (MQ=255)
                                                       aaTGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGcat                                                                               <  1:1451636/140‑1 (MQ=255)
                                                       aaTGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGcat                                                                               <  2:1430240/140‑1 (MQ=255)
                                                       aaTGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGcat                                                                               <  2:975546/140‑1 (MQ=255)
                                                             ttCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCTATTCTGGCTCATCCATTTCCGCATCATCGt                                                                         <  2:1680850/140‑1 (MQ=255)
                                                             ttCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGt                                                                         <  1:589949/140‑1 (MQ=255)
                                                             ttCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGt                                                                         <  1:829768/140‑1 (MQ=255)
                                                                     tATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTa                                                                 >  2:510675/1‑140 (MQ=255)
                                                                     tATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTa                                                                 >  2:1657605/1‑140 (MQ=255)
                                                                     tATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTa                                                                 >  1:493731/1‑140 (MQ=255)
                                                                      aTCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTAt                                                                <  1:561962/140‑1 (MQ=255)
                                                                            cAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGcc                                                          >  2:697775/1‑140 (MQ=255)
                                                                              aGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCAt                                                        <  1:1347593/140‑1 (MQ=255)
                                                                               gCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCAtt                                                       >  2:739306/1‑140 (MQ=255)
                                                                                   tatTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATg                                                                    <  2:756740/123‑1 (MQ=255)
                                                                                   tatTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATg                                                                    >  1:756740/1‑123 (MQ=255)
                                                                                      tcttcAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTa                                                <  1:925494/140‑1 (MQ=255)
                                                                                          cAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGTCGGTAAGCa                                            >  1:132932/1‑140 (MQ=255)
                                                                                          cAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCa                                            >  2:271117/1‑140 (MQ=255)
                                                                                          cAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCa                                            >  1:765851/1‑140 (MQ=255)
                                                                                          cAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCa                                            >  2:1430566/1‑140 (MQ=255)
                                                                                          cAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCa                                            <  1:630702/140‑1 (MQ=255)
                                                                                          cAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCa                                            >  1:540146/1‑140 (MQ=255)
                                                                                            gCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATc                                          <  1:1398972/140‑1 (MQ=255)
                                                                                             cccACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGt                                                 <  2:1394551/132‑1 (MQ=255)
                                                                                             cccACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGt                                                 >  1:1394551/1‑132 (MQ=255)
                                                                                             cccACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCa                                         >  2:212655/1‑140 (MQ=255)
                                                                                                aCTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAggg                                      <  2:273842/140‑1 (MQ=255)
                                                                                                aCTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAggg                                      >  1:1305675/1‑140 (MQ=255)
                                                                                                aCTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAggg                                      <  1:1154497/140‑1 (MQ=255)
                                                                                                aCTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAggg                                      >  1:1019080/1‑140 (MQ=255)
                                                                                                aCTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAggg                                      <  1:212655/140‑1 (MQ=255)
                                                                                                          cTTGCGAGCCTTGAACCTTTTTTCACACTCCTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAgg                            <  2:1194214/140‑1 (MQ=255)
                                                                                                            tGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATc                                          <  2:1551245/124‑1 (MQ=255)
                                                                                                            tGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATc                                          >  1:1551245/1‑124 (MQ=255)
                                                                                                            tGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAggg                                      <  1:1609751/128‑1 (MQ=255)
                                                                                                            tGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAggg                                      >  2:1609751/1‑128 (MQ=255)
                                                                                                            tGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGAt                          >  2:810458/1‑140 (MQ=255)
                                                                                                            tGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGAt                          >  1:534246/1‑140 (MQ=255)
                                                                                                            tGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGAt                          >  1:1256996/1‑140 (MQ=255)
                                                                                                            tGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGAt                          >  2:525972/1‑140 (MQ=255)
                                                                                                            tGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGAt                          >  2:773013/1‑140 (MQ=255)
                                                                                                            tGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGAt                          >  1:775919/1‑140 (MQ=255)
                                                                                                            tGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGAt                          >  1:1053792/1‑140 (MQ=255)
                                                                                                            tGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGAt                          >  2:1370462/1‑140 (MQ=255)
                                                                                                            tGCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGAt                          <  2:1317750/140‑1 (MQ=255)
                                                                                                             gCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATg                         <  1:810458/140‑1 (MQ=255)
                                                                                                             gCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATg                         <  2:515182/140‑1 (MQ=255)
                                                                                                             gCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATg                         <  2:1305675/140‑1 (MQ=255)
                                                                                                             gCGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATg                         <  1:1657605/140‑1 (MQ=255)
                                                                                                              cGAGCCTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGc                        >  1:1434104/1‑140 (MQ=255)
                                                                                                                  ccTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGCTCCa                    >  2:1124857/1‑140 (MQ=255)
                                                                                                                  ccTTGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGCTCCa                    <  1:510675/140‑1 (MQ=255)
                                                                                                                    ttGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGCTCCAtt                  <  2:1053792/140‑1 (MQ=255)
                                                                                                                     tGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATg                         <  2:1236953/132‑1 (MQ=255)
                                                                                                                     tGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATg                         >  1:1236953/1‑132 (MQ=255)
                                                                                                                     tGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGCTCCATTa                 <  1:17856/140‑1 (MQ=255)
                                                                                                                     tGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGCTCCATTa                 >  2:106541/1‑140 (MQ=255)
                                                                                                                     tGAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGCTCCATTa                 <  1:739306/140‑1 (MQ=255)
                                                                                                                      gAACCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGCTCCATTaa                >  1:285884/1‑140 (MQ=255)
                                                                                                                       aaCCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGCTc                      >  1:493430/1‑133 (MQ=255)
                                                                                                                       aaCCTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGCTc                      <  2:493430/133‑1 (MQ=255)
                                                                                                                         ccTTTTTTCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGCTCCATTAAGct             <  2:1019080/140‑1 (MQ=255)
                                                                                                                            tttttCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGCTCCATTAAGctcct          <  1:697775/140‑1 (MQ=255)
                                                                                                                            tttttCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGCTCCATTAAGctcct          <  1:1444474/140‑1 (MQ=255)
                                                                                                                            tttttCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGCTCCATTAAGctcct          <  1:1430566/140‑1 (MQ=255)
                                                                                                                                tCACACTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGCTCCATTAAGCTCCTCAat      <  2:64094/140‑1 (MQ=255)
                                                                                                                                    acTCGTCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGCTCCATTAAGCTCCTCAATATGt  >  2:242444/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                      
TTTGTACATAAGGCAATAATGGCAGGCTCATTTCCCCATCCCTCGTTACCGCAAGAATGGTTTCATCGTTATCCTGCAAGCTATATTCTTCAGCCCACTGCAGGACCTTGCGAGCCTTGAACCTTTTTTCACACTCGGCGCTTTCAAATTTATCCATGCCATTGCCGACCCATTCTGGCTCATCCATTTCCGCATCATCGTAAATGCTATCCAGCCATTGCCGGTAAGCATCAGGGAAAAATAAGGATGCTCCATTAAGCTCCTCAATATGT  >  NC_000913/2884816‑2885087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A