Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
155 |
60.3 |
2039550 |
99.3% |
2025273 |
138.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,959,250 |
T→C |
D1060G (GAC→GGC) |
recC ← |
exodeoxyribonuclease V subunit RecC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,959,250 | 0 | T | C | 95.3%
| 275.5
/ 0.3
| 85 | D1060G (GAC→GGC) | recC | exodeoxyribonuclease V subunit RecC |
| Reads supporting (aligned to +/- strand): ref base T (2/2); new base C (45/36); total (47/38) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGCCTCCATTGTCTCTGGTGTTAATTGCCGCCAGAGCCTTTGATACCAGATATCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGTCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATACCCCTCAATCAGTTGTGAGAGGTAATGCAAA > NC_000913/2959117‑2959381
|
ggCCTCCATTGTCTCTGGTGTTAATTGCCGCCAGAGCCTTTGATACCAGATATCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCa < 2:337002/140‑1 (MQ=255)
gCCTCCATTGTCTCTGGTGTTAATTGCCGCCAGAGCCTTTGATACCAGATATCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAg > 2:221308/1‑140 (MQ=255)
cTCCATTGTCTCTGGTGTTAATTGCCGCCAGAGCCTTTGATACCAGATATCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCa < 1:221308/140‑1 (MQ=255)
tctcTGGTGTTAATTGCCGCCAGAGCCTTTGATACCAGATATCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCg > 1:95649/1‑140 (MQ=255)
tctcTGGTGTTAATTGCCGCCAGAGCCTTTGATACCAGATATCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCg > 1:269911/1‑140 (MQ=255)
tctGGTGTTAATTGCCGCCAGAGCCTTTGATACCAGATATCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGtt > 2:191775/1‑140 (MQ=255)
ggTGTTAATTGCCGCCAGAGCCTTTGATACCAGATATCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTg < 2:185415/140‑1 (MQ=255)
tgtTAATTGCCGCCAGAGCCTTTGATACCAGATATCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTgcg < 1:852455/140‑1 (MQ=255)
ttAATTGCCGCCAGAGCCTTTGATACCAGATATCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCa < 2:345349/123‑1 (MQ=255)
ttAATTGCCGCCAGAGCCTTTGATACCAGATATCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCa > 1:345349/1‑123 (MQ=255)
gccgccAGAGCCTTTGATACCAGATATCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATaa < 1:137231/140‑1 (MQ=255)
cgccAGAGCCTTTGATACCAGATATCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACa > 1:223961/1‑140 (MQ=255)
cAGATATCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGcgcc > 2:233312/1‑140 (MQ=255)
gATATCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGcgccgc > 1:730054/1‑140 (MQ=255)
gATATCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGcgccgc < 2:269911/140‑1 (MQ=255)
atatCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCgccgcc > 1:784824/1‑140 (MQ=255)
atatCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCgccgcc > 1:85691/1‑140 (MQ=255)
atatCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCgccgcc > 1:467772/1‑140 (MQ=255)
tcatcaCCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCa < 2:688594/128‑1 (MQ=255)
tcatcaCCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCa > 1:688594/1‑128 (MQ=255)
catcaCCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACtt > 1:435360/1‑140 (MQ=255)
caCCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCa > 1:910409/1‑140 (MQ=255)
caCCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCa > 1:345511/1‑140 (MQ=255)
cTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGt > 1:164191/1‑140 (MQ=255)
cTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGt < 2:467772/140‑1 (MQ=255)
cTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGt < 2:223961/140‑1 (MQ=255)
cTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGt > 2:82097/1‑140 (MQ=255)
cTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGt < 1:233312/140‑1 (MQ=255)
tCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTaa > 1:603396/1‑140 (MQ=255)
tCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTaa > 2:637231/1‑140 (MQ=255)
cGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACt > 2:495666/1‑130 (MQ=255)
cGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACt < 1:495666/130‑1 (MQ=255)
cGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAac > 2:617384/1‑140 (MQ=255)
gCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCgccgcc < 1:358139/126‑1 (MQ=255)
gCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCgccgcc > 2:358139/1‑126 (MQ=255)
ccACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAacac > 1:94984/1‑140 (MQ=255)
cACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGTCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCa > 2:1005414/1‑140 (MQ=255)
cACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCa > 2:580647/1‑140 (MQ=255)
atcatGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCa < 2:625428/136‑1 (MQ=255)
atcatGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCa > 1:625428/1‑136 (MQ=255)
catGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGgcg > 2:981198/1‑140 (MQ=255)
tGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGAc > 1:754460/1‑140 (MQ=255)
tGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGAc > 1:942333/1‑140 (MQ=255)
gCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACa < 1:580647/140‑1 (MQ=255)
ccTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGTCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACAt < 1:1005414/140‑1 (MQ=255)
ccTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACAt > 2:531369/1‑140 (MQ=255)
ccTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACAt > 2:1018298/1‑140 (MQ=255)
ccTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACAt > 1:476994/1‑140 (MQ=255)
ccTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACAt > 2:244051/1‑140 (MQ=255)
ccTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACAt > 2:493445/1‑140 (MQ=255)
ccTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACAt < 2:784824/140‑1 (MQ=255)
ccTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACAt < 2:942333/140‑1 (MQ=255)
ttCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTc > 1:704705/1‑140 (MQ=255)
ttCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTc > 1:388666/1‑140 (MQ=255)
ttCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTc > 2:875850/1‑140 (MQ=255)
tCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGTCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTcc > 2:209738/1‑140 (MQ=255)
tCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTcc < 1:1018298/140‑1 (MQ=255)
cGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGcgcg < 2:859829/131‑1 (MQ=255)
cGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGcgcg > 1:859829/1‑131 (MQ=255)
gTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCtt < 2:435360/140‑1 (MQ=255)
ccTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGa < 2:276742/140‑1 (MQ=255)
ccTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGa > 2:187443/1‑140 (MQ=255)
cTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGAt > 2:459285/1‑140 (MQ=255)
cTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGAt < 2:730054/140‑1 (MQ=255)
cTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGAt < 1:875850/140‑1 (MQ=255)
aaGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACg > 2:355851/1‑135 (MQ=255)
aaGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACg < 1:355851/135‑1 (MQ=255)
aaGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATAcc > 2:370198/1‑140 (MQ=255)
aGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATAccc > 1:673092/1‑140 (MQ=255)
aGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATAccc > 2:285211/1‑140 (MQ=255)
ggAATTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATAcccc < 1:191775/140‑1 (MQ=255)
aTTTCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATACCCCTCa > 2:304880/1‑140 (MQ=255)
ttCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATACCCCTCAAt < 2:388666/140‑1 (MQ=255)
ttCGTACGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATACCCCTCAAt < 2:95649/140‑1 (MQ=255)
cGTACGGGCTTTTTGCAACGTGGAATCGTCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATACCCCTCAATCa < 1:209738/140‑1 (MQ=255)
aCGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATACCCCTCAATCAGtt < 2:345511/140‑1 (MQ=255)
aCGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATACCCCTCAATCAGtt < 1:531369/140‑1 (MQ=255)
aCGGGCTTTTTGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATACCCCTCAATCAGtt < 2:910409/140‑1 (MQ=255)
ttttGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGTGCGGACATTCCTTCACGATACCCCTCAATCAGTTGTGagag < 1:617384/140‑1 (MQ=255)
tttGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATACCCCTCAATCAGTTGTGAGAgg < 2:164191/140‑1 (MQ=255)
ttGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATACCCCTCAATCAGTTGTGAGAGGt < 2:476994/140‑1 (MQ=255)
ttGCAACGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATACCCCTCAATCAGTTGTGAGAGGt < 1:285211/140‑1 (MQ=255)
aCGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATACCCCTCAATCAGTTGTGAGAGGTAATGc > 2:877862/1‑140 (MQ=255)
aCGTGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATACCCCTCAATCAGTTGTGAGAGGTAATGc < 2:94984/140‑1 (MQ=255)
tGGAATCGCCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATACCCCTCAATCAGTTGTGAGAGGTAATGCaaa < 1:304880/140‑1 (MQ=255)
|
GGCCTCCATTGTCTCTGGTGTTAATTGCCGCCAGAGCCTTTGATACCAGATATCATCACCTTCGCCACGCACCATCATGTTGCCTTCGTAAGCCTGAAGGAATTTCGTACGGGCTTTTTGCAACGTGGAATCGTCATCCAGCATGGCATCGTTTTGCGCGTCATAACAGGTTTTTAGCCACGCGCCGCCACTTTCAGGTAACACCAGCAATGGCGCGGACATTCCTTCACGATACCCCTCAATCAGTTGTGAGAGGTAATGCAAA > NC_000913/2959117‑2959381
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
