Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 155 60.3 2039550 99.3% 2025273 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,695,943 T→C pseudogene (43/753 nt) bcsQ ← cellulose biosynthesis protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,695,9430TC96.0% 126.2 / ‑3.4 50pseudogene (43/753 nt)bcsQcellulose biosynthesis protein
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (23/25);  total (24/26)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.87e-01

TGGCCCAGCCCTGACGGTGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCA  >  NC_000913/3695808‑3696078
                                                                                                                                        |                                                                                                                                       
tGGCCCAGCCCTGACGGTGGGTAAAATCAGCATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCcccc                                                                                                                                     >  2:747136/1‑140 (MQ=255)
  gccaaGCCCTGACGGTGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCAc                                                                                                                                   >  1:576700/5‑140 (MQ=255)
   cccAGCCCTGACGGTGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACg                                                                                                                                  <  1:343721/140‑1 (MQ=255)
     cAGCCCTGACGGTGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGcc                                                                                                                                >  2:292373/1‑140 (MQ=255)
      aGCCCTGACGGTGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCt                                                                                                                               <  1:292981/140‑1 (MQ=255)
       gCCCTGACGGTTGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTc                                                                                                                              >  2:716009/1‑140 (MQ=255)
            gACGGTGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCg                                                                                                                          <  1:111317/139‑1 (MQ=255)
            gACGGTGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCg                                                                                                                          >  2:111317/1‑139 (MQ=255)
            gACGGTGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGc                                                                                                                         <  2:286744/140‑1 (MQ=255)
            gACGGTGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑GTGTTGGCCCCAAGCcccccccc                                                                                                                         >  2:564442/1‑138 (MQ=255)
            gACGGTGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGGGGTGG‑GTGTTTTTCcccccccccccccc                                                                                                                         >  1:277117/1‑138 (MQ=255)
            gACGGTGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGCGATGG‑TTGTTGGCCCCCCGCCTcccccc                                                                                                                         >  2:683154/1‑138 (MQ=255)
             aCGGTGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCa                                                                                                                        <  1:548765/140‑1 (MQ=255)
               ggTGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCAcc                                                                                                                      <  1:404459/140‑1 (MQ=255)
                gTGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCAccc                                                                                                                     <  1:292373/140‑1 (MQ=255)
                gTGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCAccc                                                                                                                     <  1:671343/140‑1 (MQ=255)
                gTGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCAccc                                                                                                                     <  2:238325/140‑1 (MQ=255)
                 tGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCAcccc                                                                                                                    <  2:576700/140‑1 (MQ=255)
                  gggTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGc                                                                                                                                 <  2:126332/126‑1 (MQ=255)
                  gggTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGc                                                                                                                                 >  1:126332/1‑126 (MQ=255)
                   ggTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGTCCCCACGCCTCCCCGCAcccccc                                                                                                                  >  1:515933/1‑139 (MQ=255)
                    gTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTg                                                                                                                 <  2:355491/140‑1 (MQ=255)
                     tAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTGc                                                                                                                <  2:260766/140‑1 (MQ=255)
                          tCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCCCGCCCCCCCCCACCCCCTGCTATcc                                                                                                           >  2:219584/1‑140 (MQ=255)
                          tCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTGCTATcc                                                                                                           <  1:967868/140‑1 (MQ=255)
                              cATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCAccccc                                                                                                                   <  2:316282/128‑1 (MQ=255)
                              cATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCCCAccccc                                                                                                                   >  1:316282/1‑128 (MQ=255)
                              cATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACCCCCCCCCGCACCCCCTGCCATCCCCGt                                                                                                       >  1:988548/1‑140 (MQ=255)
                               aTTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTa                                                                                                      <  1:503351/140‑1 (MQ=255)
                                  aaaTGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACgg                                                                                                   <  1:431649/140‑1 (MQ=255)
                                   aaTGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGc                                                                                                  <  2:209246/140‑1 (MQ=255)
                                   aaTGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACCCCTCCCCGCACCCCCCGCCATCCCCGTACGGc                                                                                                  >  2:457749/1‑140 (MQ=255)
                                        cAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGGTTG‑TTGTTGCCCCCCCGCCTCCCCGCCCCCCCTGCCATCCCCGTACGGCCactt                                                                                             >  1:462367/1‑137 (MQ=255)
                                         aGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑GTGTTGCCCCCCCCCCCCCCCCCCCCCCCCGCTATCCCCGTACGGCCCttta                                                                                            >  1:253490/1‑138 (MQ=255)
                                         aGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑GTGTTGCCCCCACCCCCCCCCCCACCCCCCGCCATCCCCGTACGGCCCTTCa                                                                                            >  2:91429/1‑140 (MQ=255)
                                           gcgcAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTGCTATCCCCGTACGGCCATTCAcc                                                                                          >  1:629011/1‑140 (MQ=255)
                                           gcgcAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCAcc                                                                                          >  1:171184/1‑140 (MQ=255)
                                            cgcAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCa                                                                                         <  1:457749/140‑1 (MQ=255)
                                                         ccGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACCCCTCCCCGCACCCCCCGCTATCCCAGTACGGCCATTCACCAATCCCCTACtttt                                                                            >  2:821902/1‑140 (MQ=255)
                                                                 gcaTCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTttg                                                                           <  1:328355/133‑1 (MQ=255)
                                                                 gcaTCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCCCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTttg                                                                           >  2:328355/1‑133 (MQ=255)
                                                                  caTCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCATACTTTTGTTGCGCaa                                                                   <  2:515933/140‑1 (MQ=255)
                                                                           ccaGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCCCGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAAACCCCCACCTTTTTTGCGCAAACTCTGccc                                                          >  2:406465/1‑139 (MQ=255)
                                                                           ccaGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCCCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTTTGTTGCGCCAACTCTTccc                                                          >  2:544367/1‑139 (MQ=255)
                                                                           ccaGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGAGAGGGTTTGTTG‑CCCCCCGCCTCCCCCCACCCCCCGCTATCCCACTACGGCCCTTCACCAAACCCCTTCTTTTGTTGCGCAAACCCTGCCa                                                          >  2:951473/1‑140 (MQ=255)
                                                                            caGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCCCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTTTGTTGCGCAAACTCTGCCAg                                                         >  1:774754/1‑140 (MQ=255)
                                                                                   ttttCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTTTGTTGCGCAAACTCTGCCAGCAACGGc                                                  <  1:406465/140‑1 (MQ=255)
                                                                                    tttCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTTTGTTGCGCAAACTCTGCCAGCAACGGcc                                                 <  1:219584/140‑1 (MQ=255)
                                                                                                     aaTGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCcgcg                                <  1:564442/140‑1 (MQ=255)
                                                                                                      aTGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTTTGTTGCGCAAACTCTGCCAGCAACGGcc                                                 <  2:75590/122‑1 (MQ=255)
                                                                                                      aTGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTTTGTTGCGCAAACTCTGCCAGCAACGGcc                                                 >  1:75590/1‑122 (MQ=255)
                                                                                                         aCCAGGCTAATGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCa                            >  1:267963/1‑140 (MQ=255)
                                                                                                          ccAGGCTAATGCGGCGGTGTTGG‑TTGTTGTCCCCCCGCCACCCCCCCCCCCCTTCTCTCCCCGTACCGCCATTCACCAATCCCCGACTTTTTTTGCGCGAAAACAGACATGAAAAGCCAACGGTTTAATACCGCCGCCaa                           >  2:239125/1‑140 (MQ=255)
                                                                                                              gCTAATGCGGCGGTGAGGG‑GTGTTGCCCCCACGCCTCCCCGCACCCCCTGCTATCCCCGTACGGCCATTCACCAATCCCCCACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGt                       >  2:371496/1‑140 (MQ=255)
                                                                                                                   tGCGGCGGTGATGG‑TTGTTGCCCCCACGCCTCCCCCCACCCCCTGCTATCCCAGTACGGCCCTTCACCAATCCCCTACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTcgcg                  >  2:354219/1‑140 (MQ=255)
                                                                                                                        cggTGATGG‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTggg             <  2:171184/140‑1 (MQ=255)
                                                                                                                               gg‑TTGTTGCCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATc      >  2:732645/1‑140 (MQ=255)
                                                                                                                                   tgttgcCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGc   <  2:988548/140‑1 (MQ=255)
                                                                                                                                   tgttgcCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGc   <  1:239125/140‑1 (MQ=255)
                                                                                                                                    gttgcCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCa  <  1:91429/140‑1 (MQ=255)
                                                                                                                                    gttgcCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCa  <  1:11959/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
TGGCCCAGCCCTGACGGTGGGTAAAATCAACATTAAATGACAGGCGCAACAAGTTGTCCGGGCAGGCATCGACCACCAGGACATTTTCTCCCAACATTTGTAATGACCAGGCTAATGCGGCGGTGATGG‑TTGTTGTCCCCACGCCTCCCCGCACCCCCTGCTATCCCAGTACGGCCATTCACCAATCCCCTACTTTTGTTGCGCAAACTCTGCCAGCAACGGCCAGCGTTTTAATGCCGCGGCCAACTGTTCGCGTTGGGAAATATCGGCA  >  NC_000913/3695808‑3696078

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A