Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 155 60.3 2039550 99.3% 2025273 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,905,639 (A)9→10 intergenic (‑42/+92) bglF ← / ← bglG beta‑glucoside specific PTS enzyme II/BglG kinase/BglG phosphatase/transcriptional antiterminator BglG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,905,6301.A95.0% 204.7 / 2.5 60intergenic (‑33/+101)bglF/bglGbeta‑glucoside specific PTS enzyme II/BglG kinase/BglG phosphatase/transcriptional antiterminator BglG
Reads supporting (aligned to +/- strand):  ref base . (2/1);  new base A (24/33);  total (26/34)
Fisher's exact test for biased strand distribution p-value = 5.74e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.94e-01

TTTCATCCTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATA  >  NC_000913/3905492‑3905758
                                                                                                                                           |                                                                                                                                 
tttCATCCTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑‑a                                                                                                                                 <  2:759509/140‑1 (MQ=255)
                aaaaCGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGaaa                                                                                                                  >  1:499335/1‑140 (MQ=255)
                aaaaCGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGaaa                                                                                                                  >  1:572577/1‑140 (MQ=255)
                        aTCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAAACCTGAAAAAAACgg                                                                                                           >  1:790670/1‑140 (MQ=255)
                        aTCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGc                                                                                                          <  1:130341/140‑1 (MQ=255)
                        aTCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGc                                                                                                          >  2:59171/1‑140 (MQ=255)
                         tCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGcc                                                                                                         <  1:728176/140‑1 (MQ=255)
                              ttGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACg                                                                                                    >  1:723412/1‑140 (MQ=255)
                              ttGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTAGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACg                                                                                                    >  2:910948/1‑140 (MQ=255)
                                  gcAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGaa                                                                                                <  2:197532/140‑1 (MQ=255)
                                      tGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCaa                                                                                            >  2:90899/1‑140 (MQ=255)
                                         aTCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCa                                                                                         >  2:533838/1‑140 (MQ=255)
                                          tCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCaa                                                                                        <  1:837742/140‑1 (MQ=255)
                                                 cacaATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAAttttttt                                                                                 <  2:943539/140‑1 (MQ=255)
                                                  acaATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGTCCTGACGTGAATTAAGCAATTTTTTTc                                                                                >  2:909158/1‑140 (MQ=255)
                                                  acaATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTc                                                                                <  2:100435/140‑1 (MQ=255)
                                                  acaATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTc                                                                                >  1:824929/1‑140 (MQ=255)
                                                      tGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGt                                                                            <  2:682194/140‑1 (MQ=255)
                                                        ttATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGttt                                                                          >  1:846644/1‑140 (MQ=255)
                                                          aTCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTg                                                                        >  1:553994/1‑140 (MQ=255)
                                                          aTCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTg                                                                        <  1:910948/140‑1 (MQ=255)
                                                                  ccccGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTa                                                                <  2:642781/140‑1 (MQ=255)
                                                                      cgcTCCTGCGACTATTTTTCTGGGTAACTCCGTCATAACTTTCCCTCTTCCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGc                                                            <  2:526984/138‑1 (MQ=255)
                                                                           cTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTaa                                                       <  1:155889/140‑1 (MQ=255)
                                                                           cTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTaa                                                       <  1:655666/140‑1 (MQ=255)
                                                                            tGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTaa                                                       >  1:686826/1‑140 (MQ=255)
                                                                            tGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCt                                                                  <  1:21140/127‑1 (MQ=255)
                                                                            tGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCt                                                                  >  2:21140/1‑127 (MQ=255)
                                                                             gCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACa                                                     <  1:59171/140‑1 (MQ=255)
                                                                                     ttttCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTa                                             <  1:215756/140‑1 (MQ=255)
                                                                                        tCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTc                                          <  2:72971/140‑1 (MQ=255)
                                                                                          tGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCa                                         <  2:790670/140‑1 (MQ=255)
                                                                                              tAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCtt                                               <  1:464662/129‑1 (MQ=255)
                                                                                              tAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCtt                                               >  2:464662/1‑129 (MQ=255)
                                                                                               aaCTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGtaata                                   <  1:90899/140‑1 (MQ=255)
                                                                                                      tCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTAc                                            >  2:39672/1‑124 (MQ=255)
                                                                                                      tCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTAc                                            <  1:39672/124‑1 (MQ=255)
                                                                                                      tCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTc                            >  2:115669/1‑140 (MQ=255)
                                                                                                      tCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTc                            >  2:472269/1‑140 (MQ=255)
                                                                                                      tCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTc                            >  1:418460/1‑140 (MQ=255)
                                                                                                                cccTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCttt                  >  2:728476/1‑140 (MQ=255)
                                                                                                                cccTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCttt                  >  1:903561/1‑140 (MQ=255)
                                                                                                                cccTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGGGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCttt                  >  2:559976/1‑140 (MQ=255)
                                                                                                                    ctACCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTgcgc              >  1:3855/1‑140 (MQ=255)
                                                                                                                      tccGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCAc            <  1:909158/139‑1 (MQ=255)
                                                                                                                      aCCGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCAcg           <  2:572577/140‑1 (MQ=255)
                                                                                                                       ccGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCAcg           <  2:3855/140‑1 (MQ=255)
                                                                                                                       ccGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCAcg           <  2:422451/140‑1 (MQ=255)
                                                                                                                       ccGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCAcg           <  1:533838/140‑1 (MQ=255)
                                                                                                                       ccGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCAcg           <  2:553994/140‑1 (MQ=255)
                                                                                                                       ccGCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGAAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCAcg           <  1:370507/140‑1 (MQ=255)
                                                                                                                         gCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCAcgcg         <  2:411865/140‑1 (MQ=255)
                                                                                                                         gCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCAcgcg         <  2:903561/140‑1 (MQ=255)
                                                                                                                         gCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCAcgcg         <  2:947209/140‑1 (MQ=255)
                                                                                                                         gCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCAcgc          >  2:718154/1‑139 (MQ=255)
                                                                                                                         gCTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCAcgc          <  1:718154/139‑1 (MQ=255)
                                                                                                                          cTTTGCGGCAAAACTCCAAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCAcgcg         <  2:686826/140‑1 (MQ=255)
                                                                                                                          cTTTGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACgcgc        >  1:817994/1‑140 (MQ=255)
                                                                                                                             tGCGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCACTGTTCTTTGCGCACGCGctct     <  2:723412/140‑1 (MQ=255)
                                                                                                                               cGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCAcg           <  2:221318/132‑1 (MQ=255)
                                                                                                                               cGGCAAAACTCCAAAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCAcg           >  1:221318/1‑132 (MQ=255)
                                                                                                                               cGGCAAAACTCC‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCtata  >  2:747604/1‑140 (MQ=255)
                                                                                                                                           |                                                                                                                                 
TTTCATCCTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCGCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCC‑‑AAAAAAAAACCTGAAAAAAACGGCCTGACGTGAATCAAGCAATTTTTTTCAGGTTTTGCCCGCTTAGTGCGGTAACAATCCTTTACTCAGTAATAATATTTCAGTGTTCTTTGCGCACGCGCTCTATA  >  NC_000913/3905492‑3905758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

N/A