Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 155 60.3 2039550 99.3% 2025273 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,364,253 T→C T264A (ACC→GCC)  dsbD ← protein disulfide oxidoreductase ‑ DsbDreduced

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,364,2530TC100.0% 340.5 / NA 95T264A (ACC→GCC) dsbDprotein disulfide oxidoreductase ‑ DsbDreduced
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (49/46);  total (49/46)

GGTGCGGTGGTGCATGGTGAACAGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGTAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAACCACCAGACCCAGCGCCGTGTAGGTCA  >  NC_000913/4364120‑4364387
                                                                                                                                     |                                                                                                                                      
ggtgcggtgGTGCATGGTGAACAGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACaa                                                                                                                                  <  1:717846/140‑1 (MQ=255)
  tgcggtgGTGCATGGTGAACAGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGc                                                                                                                                <  2:29075/140‑1 (MQ=255)
  tgcggtgGTGCATGGTGAACAGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGc                                                                                                                                >  1:633391/1‑140 (MQ=255)
    cggtgGTGCATGGTGAACAGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCa                                                                                                                              <  2:683815/140‑1 (MQ=255)
         gtgCATGGTGAACAGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACAt                                                                                                                         >  1:560481/1‑140 (MQ=255)
            cATGGTGAACAGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGa                                                                                                                      >  1:489299/1‑140 (MQ=255)
            cATGGTGAACAGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGa                                                                                                                      >  2:673729/1‑140 (MQ=255)
            cATGGTGAACAGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGa                                                                                                                      >  1:25113/1‑140 (MQ=255)
             aTGGTGAACAGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGAc                                                                                                                     <  2:353992/140‑1 (MQ=255)
                gTGAACAGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATc                                                                                                                  <  2:392537/140‑1 (MQ=255)
                   aaCAGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGcc                                                                                                               >  1:993557/1‑140 (MQ=255)
                   aaCAGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGcc                                                                                                               >  1:74535/1‑140 (MQ=255)
                   aaCAGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGcc                                                                                                               >  1:961570/1‑140 (MQ=255)
                     cAGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAg                                                                                                             <  2:167243/140‑1 (MQ=255)
                     cAGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAg                                                                                                             <  2:48582/140‑1 (MQ=255)
                      aGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGc                                                                                                            <  2:74535/140‑1 (MQ=255)
                      aGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGc                                                                                                            <  2:131691/140‑1 (MQ=255)
                      aGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGc                                                                                                            <  2:961570/140‑1 (MQ=255)
                       gATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCa                                                                                                           <  1:788630/140‑1 (MQ=255)
                        aTCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCaa                                                                                                          >  1:174426/1‑140 (MQ=255)
                           aGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGt                                                                                                       <  1:673729/140‑1 (MQ=255)
                             tCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCCCCAGCAAGGTaa                                                                                                     >  2:487245/1‑140 (MQ=255)
                                  cAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTa                                                                                                      <  1:873551/134‑1 (MQ=255)
                                  cAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTa                                                                                                      >  2:873551/1‑134 (MQ=255)
                                  cAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACg                                                                                                >  1:415058/1‑140 (MQ=255)
                                  cAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACg                                                                                                >  2:222134/1‑140 (MQ=255)
                                  cAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACg                                                                                                >  1:70089/1‑140 (MQ=255)
                                       gCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGc                                                                                           >  1:343986/1‑140 (MQ=255)
                                        cccccATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCg                                                                                          <  1:487245/140‑1 (MQ=255)
                                           ccATAACAAACACACCGCCAGGTTAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAgg                                                                                       <  2:450257/140‑1 (MQ=255)
                                              tAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCa                                                                                    <  2:383434/140‑1 (MQ=255)
                                              tAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCa                                                                                    <  2:843121/140‑1 (MQ=255)
                                              tAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCa                                                                                    <  1:675528/140‑1 (MQ=255)
                                                 caaacaCACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATg                                                                                 >  1:248705/1‑140 (MQ=255)
                                                   aacaCACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAATAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAg                                                                               >  2:570981/1‑140 (MQ=255)
                                                     cacacCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGCAAAGACGATGGCGAGGCCAATGAGCa                                                                             >  1:24701/1‑140 (MQ=255)
                                                      acacCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCAc                                                                            >  2:159902/1‑140 (MQ=255)
                                                       cacCTCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACg                                                                           >  1:524909/1‑140 (MQ=255)
                                                       cacCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACg                                                                           >  2:307807/1‑140 (MQ=255)
                                                       cacCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACg                                                                           >  2:297039/1‑140 (MQ=255)
                                                        acCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCa                                                                                    >  2:927083/1‑130 (MQ=255)
                                                        acCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCa                                                                                    <  1:927083/130‑1 (MQ=255)
                                                         ccGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGc                                                                                           <  1:793948/122‑1 (MQ=255)
                                                         ccGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGc                                                                                           >  2:793948/1‑122 (MQ=255)
                                                         ccGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTa                                                                         >  1:423398/1‑140 (MQ=255)
                                                           gCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATg                                                                       >  2:86998/1‑140 (MQ=255)
                                                           gCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATg                                                                       >  2:339869/1‑140 (MQ=255)
                                                            ccAGGTGAGCCGCCCTGTTGGCGATTGCTCATTAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATgg                                                                      >  2:357703/1‑140 (MQ=255)
                                                            ccAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATgg                                                                      >  1:993605/1‑140 (MQ=255)
                                                            ccAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATgg                                                                      >  1:414959/1‑140 (MQ=255)
                                                            ccAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATgg                                                                      >  2:238859/1‑140 (MQ=255)
                                                             cAGGTGAGCCGCCCTGTTGGCGATTGCTCATTAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATggg                                                                     <  1:357703/140‑1 (MQ=255)
                                                             cAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATggg                                                                     <  2:413037/140‑1 (MQ=255)
                                                             cAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATggg                                                                     <  2:248705/140‑1 (MQ=255)
                                                                 tGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCt                                                                 <  1:297039/140‑1 (MQ=255)
                                                                  gAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTg                                                                >  2:584148/1‑140 (MQ=255)
                                                                    gccgccCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCGATGAGCACGTATGGGTGCTGTa                                                              >  1:721357/1‑140 (MQ=255)
                                                                    gccgccCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTa                                                              >  1:438130/1‑140 (MQ=255)
                                                                     ccgccCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAg                                                             >  2:218386/1‑140 (MQ=255)
                                                                       gccCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAgcg                                                           <  2:993557/140‑1 (MQ=255)
                                                                       gccCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAgcg                                                           <  2:794274/140‑1 (MQ=255)
                                                                       gccCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGCAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAgcg                                                           <  2:24701/140‑1 (MQ=255)
                                                                         ccTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGcgcc                                                         >  2:335782/1‑140 (MQ=255)
                                                                          cTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGcgccg                                                        >  1:766122/1‑140 (MQ=255)
                                                                               ggCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTgg                                                   <  1:584148/140‑1 (MQ=255)
                                                                               ggCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTgg                                                   <  1:218386/140‑1 (MQ=255)
                                                                               ggCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTgg                                                   <  1:571648/140‑1 (MQ=255)
                                                                               ggCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTgg                                                   <  2:342347/140‑1 (MQ=255)
                                                                                       cTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTg                                              <  1:903086/137‑1 (MQ=255)
                                                                                       cTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTg                                              >  2:903086/1‑137 (MQ=255)
                                                                                       cTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTaa                                           >  2:813464/1‑140 (MQ=255)
                                                                                       cTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTaa                                           >  1:367203/1‑140 (MQ=255)
                                                                                               cGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAA‑CCTgcggc                                  >  2:775652/1‑140 (MQ=255)
                                                                                                  gagaCGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGcggcgg                                >  2:620522/1‑140 (MQ=255)
                                                                                                        tgtTTGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAacca                          >  2:620533/1‑140 (MQ=255)
                                                                                                          tttGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGTCAaccacc                        <  1:813464/140‑1 (MQ=255)
                                                                                                          tttGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAaccacc                        >  2:262983/1‑140 (MQ=255)
                                                                                                          tttGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAaccacc                        <  2:70089/140‑1 (MQ=255)
                                                                                                          tttGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAaccacc                        >  2:707356/1‑140 (MQ=255)
                                                                                                            tGCAGCGAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAACCATCAg                      >  1:182958/1‑140 (MQ=255)
                                                                                                                  gAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCa                              >  1:751430/1‑126 (MQ=255)
                                                                                                                  gAAGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCa                              <  2:751430/126‑1 (MQ=255)
                                                                                                                   aaGAGGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAA‑CCTGCGGCGGCAACCACCAGACCCAgcg              <  1:775652/140‑1 (MQ=255)
                                                                                                                    agagGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAACCACCAGACCCAgcg              <  1:702615/140‑1 (MQ=255)
                                                                                                                    agagGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAACCACCAGACCCAgcg              <  2:992316/140‑1 (MQ=255)
                                                                                                                    agagGGGAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGAAACCACCAGACCCAgcg              <  2:993605/140‑1 (MQ=255)
                                                                                                                         ggAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAACCACCAGACCCAGCGCCgtg         <  1:335782/140‑1 (MQ=255)
                                                                                                                         ggAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAACCACCAGACCCAGCGCCgtg         <  2:489299/140‑1 (MQ=255)
                                                                                                                         ggAGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAACCACCAGACCCAGCGCCgtg         <  1:159902/140‑1 (MQ=255)
                                                                                                                           aGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAACCACCAGACCCAGCGCCGTGTa       >  2:775996/1‑140 (MQ=255)
                                                                                                                           aGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAACCACCAGACCCAGCGCCGTGTa       >  2:754130/1‑140 (MQ=255)
                                                                                                                           aGTTGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAACCACCAGACCCAGCGCCGTGTa       >  1:432523/1‑140 (MQ=255)
                                                                                                                              tGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAACCACCAGACCCAGCGCCGTGTAGGt    <  1:238859/140‑1 (MQ=255)
                                                                                                                              tGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAACCACCAGACCCAGCGCCGTGTAGGt    <  1:262983/140‑1 (MQ=255)
                                                                                                                              tGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAACCACCAGACCCAGCGCCGTGTAGGt    <  1:339869/140‑1 (MQ=255)
                                                                                                                              tGCAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAACCACCAGACCCAGCGCCGTGTAGGt    <  2:432523/140‑1 (MQ=255)
                                                                                                                                cAGGGCAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAACCACCAGACCCAGCGCCGTGTAGGTCa  >  1:821597/1‑140 (MQ=255)
                                                                                                                                     |                                                                                                                                      
GGTGCGGTGGTGCATGGTGAACAGATCAGTCCGGCAATCGCCCCCATAACAAACACACCGCCAGGTGAGCCGCCCTGTTGGCGATTGCTCATCAACGTGAGACGTGTTTGCAGCGAAGAGGGGAGTTGCAGGGTAAACAAGCCAAACATTGACATCGCCAGCAAGGTAAAGACGATGGCGAGGCCAATGAGCACGTATGGGTGCTGTAGCGCCGCCTGGAACTGTAACCCTGCGGCGGCAACCACCAGACCCAGCGCCGTGTAGGTCA  >  NC_000913/4364120‑4364387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A