Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	151	87.4	2971636	99.2%	2947862	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	84,230	A→G	intergenic (‑522/‑138)	leuL ← / → leuO	leu operon leader peptide/DNA‑binding transcriptional dual regulator LeuO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	84,230	0	A	G	100.0%	339.5 / NA	94	intergenic (‑522/‑138)	leuL/leuO	leu operon leader peptide/DNA‑binding transcriptional dual regulator LeuO
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (54/40); total (54/40)

CATTTAATCCATTTTGTAGATGATTGAGTATTCGCGGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAACCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAGTGTGACAG  >  NC_000913/84096‑84356

caTTTAATCCATTTTGTAGATGATTGAGTATTCGCGGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGt                                                                                                                           >  2:315015/1‑140 (MQ=255)

       tCCATTTTGTAGATGATTGAGTATTCGCGGTAGTAATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTa                                                                                                                    >  2:1320432/1‑140 (MQ=255)

            tttGTAGATGATTGAGTATTCGCGGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGttt                                                                                                               >  1:340332/1‑140 (MQ=255)

                     gatTGAGTATTCGCGGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAAttt                                                                                                      >  1:873541/1‑140 (MQ=255)

                     gatTGAGTATTCGCGGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAAttt                                                                                                      >  2:590195/1‑140 (MQ=255)

                        tGAGTATTCGCGGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTAc                                                                                                   >  1:1037833/1‑140 (MQ=255)

                        tGAGTATTCGCGGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTAc                                                                                                   <  2:873541/140‑1 (MQ=255)

                        tGAGTATTCGCGGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTAc                                                                                                   >  1:195612/1‑140 (MQ=255)

                          aGTATTCGCGGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTc                                                                                                 >  2:811408/1‑140 (MQ=255)

                          aGTATTCGCGGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTc                                                                                                 >  1:303362/1‑140 (MQ=255)

                          aGTATTCGCGGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTc                                                                                                 >  2:210456/1‑140 (MQ=255)

                          aGTATTCGCGGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTc                                                                                                 >  2:246917/1‑140 (MQ=255)

                             aTTCGCGGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCAtt                                                                                              >  1:875409/1‑140 (MQ=255)

                              ttCGCGGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCAttt                                                                                             >  2:874935/1‑140 (MQ=255)

                               tCGCGGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCAtttt                                                                                            >  1:980559/1‑140 (MQ=255)

                                cgcgGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTg                                                                                           >  1:178825/1‑140 (MQ=255)

                                cgcgGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTg                                                                                           >  2:1021014/1‑140 (MQ=255)

                                 gcgGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGc                                                                                          >  1:1332838/1‑140 (MQ=255)

                                 gcgGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGc                                                                                          >  2:132154/1‑140 (MQ=255)

                                  cgGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCt                                                                                         <  1:246917/140‑1 (MQ=255)

                                    gTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCttt                                                                                       >  1:74643/1‑140 (MQ=255)

                                      aGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCttttt                                                                                     <  2:195612/140‑1 (MQ=255)

                                      aGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCttttt                                                                                     <  2:303362/140‑1 (MQ=255)

                                      aGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCttttt                                                                                     <  2:875409/140‑1 (MQ=255)

                                      aGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCttttt                                                                                     <  1:358517/140‑1 (MQ=255)

                                              ttAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTAtttt                                                                             <  2:74643/140‑1 (MQ=255)

                                                 gATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTtata                                                                          >  2:563426/1‑140 (MQ=255)

                                                  aTTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTatat                                                                         >  2:353154/1‑140 (MQ=255)

                                                   ttGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATg                                                                        <  1:210456/140‑1 (MQ=255)

                                                    tGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGc                                                                       <  1:811408/140‑1 (MQ=255)

                                                     gTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCa                                                                      <  2:980559/140‑1 (MQ=255)

                                                       tttCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATg                                                                    <  1:563426/140‑1 (MQ=255)

                                                        ttCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGa                                                                   >  2:1262399/1‑140 (MQ=255)

                                                         tCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGAt                                                                  <  2:477330/140‑1 (MQ=255)

                                                          cGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATa                                                                 >  1:942025/1‑140 (MQ=255)

                                                           gCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATaa                                                                >  1:850874/1‑140 (MQ=255)

                                                                 aaaaCATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCata                                                          <  1:1320432/140‑1 (MQ=255)

                                                                       ttATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATAttcttc                                                    <  1:1449214/140‑1 (MQ=255)

                                                                             attattATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGatt                                              >  2:899081/1‑140 (MQ=255)

                                                                               tattatGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATAttc                                                       <  1:410006/129‑1 (MQ=255)

                                                                               tattatGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATAttc                                                       >  2:410006/1‑129 (MQ=255)

                                                                                attatGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATAttct                                                      <  2:252623/129‑1 (MQ=255)

                                                                                attatGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATAttct                                                      >  1:252623/1‑129 (MQ=255)

                                                                                 ttatGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTAttt                                          <  2:340332/140‑1 (MQ=255)

                                                                                  tatGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTtc                                         >  2:12520/1‑140 (MQ=255)

                                                                                    tGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTtctc                                       <  1:1021014/140‑1 (MQ=255)

                                                                                      cTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTg                                     <  1:530768/140‑1 (MQ=255)

                                                                                        gtgGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCa                                   >  1:801523/1‑140 (MQ=255)

                                                                                         tgGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGGTTATTTCTCTGCAt                                  >  2:175041/1‑140 (MQ=255)

                                                                                         tgGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCAt                                  <  2:942025/140‑1 (MQ=255)

                                                                                         tgGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCAt                                  >  2:1104630/1‑140 (MQ=255)

                                                                                           gTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTc                                >  2:447643/1‑140 (MQ=255)

                                                                                           gTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTc                                >  1:205971/1‑140 (MQ=255)

                                                                                           gTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTc                                >  2:16911/1‑140 (MQ=255)

                                                                                           gTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTc                                >  1:1378509/1‑140 (MQ=255)

                                                                                           gTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTc                                >  2:539387/1‑140 (MQ=255)

                                                                                               aTGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAAt                            <  2:801523/140‑1 (MQ=255)

                                                                                               aTGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAAt                            <  1:315015/140‑1 (MQ=255)

                                                                                               aTGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAAt                            <  2:700772/140‑1 (MQ=255)

                                                                                                   cTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCa                                   >  1:294394/1‑129 (MQ=255)

                                                                                                   cTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCa                                   <  2:294394/129‑1 (MQ=255)

                                                                                                   cTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCAt                                  >  1:840690/1‑130 (MQ=255)

                                                                                                   cTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCAt                                  <  2:840690/130‑1 (MQ=255)

                                                                                                   cTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATaagg                        >  1:792487/1‑140 (MQ=255)

                                                                                                   cTCATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATaagg                        >  1:1017183/1‑140 (MQ=255)

                                                                                                     cATTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATaaggga                      >  1:283351/1‑140 (MQ=255)

                                                                                                      aTTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATaagggaa                     >  1:1344856/1‑140 (MQ=255)

                                                                                                      aTTCCACGGCAATGGATTCTGTTTTTATCAGAGCCCATATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATaagggaa                     >  1:538553/1‑140 (MQ=255)

                                                                                                        tCCACGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATaagggaaag                   <  2:205971/140‑1 (MQ=255)

                                                                                                            cGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAAt                            >  2:1408726/1‑127 (MQ=255)

                                                                                                            cGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAAt                            <  1:1408726/127‑1 (MQ=255)

                                                                                                            cGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAg               <  1:12520/140‑1 (MQ=255)

                                                                                                            cGGCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAg               <  2:344046/140‑1 (MQ=255)

                                                                                                             ggCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGt              >  2:260901/1‑140 (MQ=255)

                                                                                                              gCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGtt             <  2:184946/140‑1 (MQ=255)

                                                                                                              gCAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATAAGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGtt             <  2:1037833/140‑1 (MQ=255)

                                                                                                               cAATGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTa            >  2:757019/1‑140 (MQ=255)

                                                                                                                 aTGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAg               <  1:1141251/135‑1 (MQ=255)

                                                                                                                 aTGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAg               >  2:1141251/1‑135 (MQ=255)

                                                                                                                  tGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAgt         >  1:186016/1‑140 (MQ=255)

                                                                                                                  tGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAgt         >  2:420540/1‑140 (MQ=255)

                                                                                                                  tGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAgt         >  2:351365/1‑140 (MQ=255)

                                                                                                                  tGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAgt         >  1:648332/1‑140 (MQ=255)

                                                                                                                  tGGATTCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAgt         >  2:102960/1‑140 (MQ=255)

                                                                                                                       tCTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAGTGTGAc    <  1:260901/140‑1 (MQ=255)

                                                                                                                        cTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAGTGTGACa   <  1:16911/140‑1 (MQ=255)

                                                                                                                        cTGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAGTGTGACa   <  1:590195/140‑1 (MQ=255)

                                                                                                                         tGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGGTTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAGTGTGACAg  <  1:175041/140‑1 (MQ=255)

                                                                                                                         tGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAGTGTGACa   <  1:1189763/139‑1 (MQ=255)

                                                                                                                         tGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAGTGTGACa   >  2:1189763/1‑139 (MQ=255)

                                                                                                                         tGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAGTGTGACAg  >  1:280077/1‑140 (MQ=255)

                                                                                                                         tGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAGTGTGACAg  <  2:648332/140‑1 (MQ=255)

                                                                                                                         tGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAGTGTGACAg  <  1:353154/140‑1 (MQ=255)

                                                                                                                         tGTTTTTATCAGAGCCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAGTGTGACAg  <  1:757019/140‑1 (MQ=255)

CATTTAATCCATTTTGTAGATGATTGAGTATTCGCGGTAGTTATGATTAGATTGTTTTCGCAACAAAAACATTATGGATTATTATGCTGTGGTAAATGACTCATTCCACGGCAATGGATTCTGTTTTTATCAGAACCCGTATCTTTATGTTTTCCGAATTTTACTCATTTTGCTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAAGTGTGACAG  >  NC_000913/84096‑84356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A