Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 260 73.5 2514320 99.3% 2496719 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 88,680 A→G N218S (AAC→AGC)  cra → DNA‑binding transcriptional dual regulator Cra

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_00091388,6800AG100.0% 269.1 / NA 74N218S (AAC→AGC) craDNA‑binding transcriptional dual regulator Cra
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (38/36);  total (38/36)

GAGTTACGTAAGTTTCCCGCCGAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAACAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGAGTGATGGATGTCACGCTGCGTCGCGACGGC  >  NC_000913/88544‑88813
                                                                                                                                        |                                                                                                                                     
gagTTACGTAAGTTTCCCGCCGAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCcagcag                                                                                                                                    <  1:42669/140‑1 (MQ=255)
 agTTACGTAAGTTTCCCGCCGAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCagcagc                                                                                                                                   >  1:672432/1‑140 (MQ=255)
  gTTACGTAAGTTTCCCGCCGAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCt                                                                                                                                  <  2:307811/140‑1 (MQ=255)
    tACGTAAGTTTCCCGCCGAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTAt                                                                                                                                >  1:388566/1‑140 (MQ=255)
        tAAGTTTCCCGCCGAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGc                                                                                                                            >  1:669386/1‑140 (MQ=255)
           gTTTCCCGCCGAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCggg                                                                                                                         >  2:1202496/1‑140 (MQ=255)
             ttCCCGCCGAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAg                                                                                                                       >  1:737213/1‑140 (MQ=255)
              tCCCGCCGAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAgg                                                                                                                      >  2:751719/1‑140 (MQ=255)
                ccgccgAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAggcg                                                                                                                    >  2:1231853/1‑140 (MQ=255)
                ccgccgAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAggcg                                                                                                                    >  1:133218/1‑140 (MQ=255)
                ccgccgAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAggcg                                                                                                                    >  2:1022235/1‑140 (MQ=255)
                 cgccgAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAggcgg                                                                                                                   <  1:92289/140‑1 (MQ=255)
                 cgccgAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAggcgg                                                                                                                   <  1:781675/140‑1 (MQ=255)
                 cgccgAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAggcgg                                                                                                                   <  2:388566/140‑1 (MQ=255)
                 cgccgAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAggcgg                                                                                                                   <  2:1000043/140‑1 (MQ=255)
                   ccgAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCt                                                                                                                 >  1:553408/1‑140 (MQ=255)
                    cgAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTg                                                                                                                <  1:109838/140‑1 (MQ=255)
                      agaCGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGcc                                                                                                              <  1:97391/140‑1 (MQ=255)
                           gTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGtt                                                                                                         >  1:894149/1‑140 (MQ=255)
                                      tGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAAt                                                                                              >  1:489633/1‑140 (MQ=255)
                                        gTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATgg                                                                                            >  1:966680/1‑140 (MQ=255)
                                        gTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATgg                                                                                            >  2:613666/1‑140 (MQ=255)
                                        gTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATgg                                                                                            >  2:238550/1‑140 (MQ=255)
                                         tGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGc                                                                                           >  2:1065328/1‑140 (MQ=255)
                                          gcgcTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCt                                                                                          <  1:1202496/140‑1 (MQ=255)
                                           cgcTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTg                                                                                         >  2:777858/1‑140 (MQ=255)
                                           cgcTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTg                                                                                         <  1:874968/140‑1 (MQ=255)
                                           cgcTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTg                                                                                         <  2:672432/140‑1 (MQ=255)
                                             cTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGa                                                                                       >  2:524523/1‑140 (MQ=255)
                                                        ttCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGa                                                                            >  1:86306/1‑140 (MQ=255)
                                                        ttCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGGTATTCGAAAAATGGCTGGAAACGCATCAGa                                                                            >  2:769678/1‑140 (MQ=255)
                                                                   tCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGgcg                                                                 <  1:1022235/140‑1 (MQ=255)
                                                                   tCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGgcg                                                                 <  2:625220/140‑1 (MQ=255)
                                                                   tCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGgcg                                                                 <  2:958255/140‑1 (MQ=255)
                                                                   tCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGgcg                                                                 <  2:1086771/140‑1 (MQ=255)
                                                                   tCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGgcg                                                                 <  1:187987/140‑1 (MQ=255)
                                                                    ccTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGgcgc                                                                >  2:374003/1‑140 (MQ=255)
                                                                       gCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAg                                                                    <  2:1107985/133‑1 (MQ=255)
                                                                       gCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAg                                                                    >  1:1107985/1‑133 (MQ=255)
                                                                           gAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTcac                                                         <  1:1771/140‑1 (MQ=255)
                                                                                aGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAAcgt                                                    >  1:660719/1‑140 (MQ=255)
                                                                                 ggTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAAcgtc                                                   >  2:571741/1‑140 (MQ=255)
                                                                                 ggTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAAcgtc                                                   >  1:897665/1‑140 (MQ=255)
                                                                                  gTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAAcgtcg                                                  >  2:659030/1‑140 (MQ=255)
                                                                                             gCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCgttgtt                                       >  1:1062317/1‑140 (MQ=255)
                                                                                             gCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCgttgtt                                       <  2:897665/140‑1 (MQ=255)
                                                                                              ccTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGttgttg                                      >  1:50492/1‑140 (MQ=255)
                                                                                                tGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCa                                    >  2:755620/1‑140 (MQ=255)
                                                                                                tGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCa                                    <  2:966680/140‑1 (MQ=255)
                                                                                                tGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCa                                    <  1:991470/140‑1 (MQ=255)
                                                                                                tGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCa                                    <  1:613666/140‑1 (MQ=255)
                                                                                                tGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCa                                    <  1:367713/140‑1 (MQ=255)
                                                                                                tGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCa                                    <  1:983629/140‑1 (MQ=255)
                                                                                                  gAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGttgttg                                      >  1:48936/1‑136 (MQ=255)
                                                                                                  gAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGttgttg                                      <  2:48936/136‑1 (MQ=255)
                                                                                                  gAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAg                                  <  1:1065328/140‑1 (MQ=255)
                                                                                                  gAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAg                                  <  1:238550/140‑1 (MQ=255)
                                                                                                   aaaGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAgg                                 <  2:50492/140‑1 (MQ=255)
                                                                                                    aaGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGa                                <  2:737213/140‑1 (MQ=255)
                                                                                                    aaGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGa                                <  1:571741/140‑1 (MQ=255)
                                                                                                     aGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGAg                               <  2:660719/140‑1 (MQ=255)
                                                                                                        tgatCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGa                                <  1:1006528/136‑1 (MQ=255)
                                                                                                        tgatCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGa                                >  2:1006528/1‑136 (MQ=255)
                                                                                                        tgatCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGAGTga                            >  1:617169/1‑140 (MQ=255)
                                                                                                         gatCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGAGTgat                           <  2:894149/140‑1 (MQ=255)
                                                                                                          atCCGCGCGAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGAGTgatg                          >  1:231712/1‑140 (MQ=255)
                                                                                                                 cgAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAg                                  >  2:992564/1‑125 (MQ=255)
                                                                                                                 cgAAGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAg                                  <  1:992564/125‑1 (MQ=255)
                                                                                                                    aGTGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGAGTGATGGATGTCACGc                >  2:345309/1‑140 (MQ=255)
                                                                                                                      tGCATTTCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGAGTGATGGATGTCACGCTg              >  2:387476/1‑140 (MQ=255)
                                                                                                                           ttCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGAGTGATGGATGTCACGCTGCGTcg         >  2:1052751/1‑140 (MQ=255)
                                                                                                                            tCCTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGAGTGATGGATGTCACGCTGCGTcgc        >  1:686510/1‑140 (MQ=255)
                                                                                                                             ccTGTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGAGTGATGGATGTCACGCTGCGTcgcg       <  1:1052751/140‑1 (MQ=255)
                                                                                                                                gTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGAGTGATGGATGTCACg                 <  2:696730/127‑1 (MQ=255)
                                                                                                                                gTATGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGAGTGATGGATGTCACg                 >  1:696730/1‑127 (MQ=255)
                                                                                                                                  aTGCCAGCAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGAGTGATGGATGTCACGCTGCGTCGCGACGGc  <  2:231712/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                     
GAGTTACGTAAGTTTCCCGCCGAGACGGTGCTTTATCTTGGTGCGCTACCGGAGCTTTCTGTCAGCTTCCTGCGTGAACAAGGTTTCCGTACTGCCTGGAAAGATGATCCGCGCGAAGTGCATTTCCTGTATGCCAACAGCTATGAGCGGGAGGCGGCTGCCCAGTTATTCGAAAAATGGCTGGAAACGCATCCGATGCCGCAGGCGCTGTTCACAACGTCGTTTGCGTTGTTGCAAGGAGTGATGGATGTCACGCTGCGTCGCGACGGC  >  NC_000913/88544‑88813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A