Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	151	87.4	2971636	99.2%	2947862	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,742,590	(G)_5→4	intergenic (+29/+11)	cfa → / ← ribC	cyclopropane fatty acyl phospholipid synthase/riboflavin synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,742,586	0	G	.	100.0%	276.7 / NA	66	intergenic (+25/+15)	cfa/ribC	cyclopropane fatty acyl phospholipid synthase/riboflavin synthase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (32/34); total (32/34)

TGTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGACGCGTGCGCCAAGTTTT  >  NC_000913/1742449‑1742721

tGTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCggg                                                                                                                                        >  2:717775/1‑140 (MQ=255)

tGTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCggg                                                                                                                                        <  2:659261/140‑1 (MQ=255)

tGTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCggg                                                                                                                                        >  1:138293/1‑140 (MQ=255)

 gTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCgggg                                                                                                                                       <  1:687414/140‑1 (MQ=255)

  tttACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCggggc                                                                                                                                      <  2:138293/140‑2 (MQ=255)

       cTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGAttt                                                                                                                                <  1:719603/140‑1 (MQ=255)

       cTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGAttt                                                                                                                                <  1:976251/140‑1 (MQ=255)

       cTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGAttt                                                                                                                                <  2:1261086/140‑1 (MQ=255)

       cTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGAttt                                                                                                                                <  1:223297/140‑1 (MQ=255)

          ttatCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAg                                                                                                                             >  2:201963/1‑140 (MQ=255)

           tatCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGa                                                                                                                            <  1:201963/140‑1 (MQ=255)

             tCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑Tc                                                                                                                         >  1:1035924/1‑140 (MQ=255)

              cTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCa                                                                                                                        <  1:1267393/140‑1 (MQ=255)

              cTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCa                                                                                                                        <  1:352693/140‑1 (MQ=255)

               tGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAg                                                                                                                       >  1:638862/1‑140 (MQ=255)

                 aaTGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGc                                                                                                                     >  2:427869/1‑140 (MQ=255)

                 aaTGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGc                                                                                                                     >  2:950999/1‑140 (MQ=255)

                 aaTGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGc                                                                                                                     >  2:647278/1‑140 (MQ=255)

                   tGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCtt                                                                                                                   >  2:165994/1‑140 (MQ=255)

                   tGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCtt                                                                                                                   >  1:438984/1‑140 (MQ=255)

                     ccTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCt                                                                                                                 >  2:818190/1‑140 (MQ=255)

                             ggTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTgg                                                                                                         <  2:1035924/140‑1 (MQ=255)

                              gTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCt                                                                                                                 >  2:1343607/1‑131 (MQ=255)

                              gTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCt                                                                                                                 <  1:1343607/131‑1 (MQ=255)

                              gTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGATGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGt                                                                                                        >  1:550612/1‑140 (MQ=255)

                                gCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTg                                                                                                      >  1:570239/1‑140 (MQ=255)

                                   ttCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGAtt                                                                                                   >  1:204643/1‑140 (MQ=255)

                                   ttCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTG‑AAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTc                                                                                                  >  1:1285647/1‑140 (MQ=255)

                                        cgcCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATgg                                                                                              >  1:457287/1‑140 (MQ=255)

                                              tGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGGTATTCTATCCCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTCTGCCTGGTTGATTCATGGCAtttt                                                                                        >  2:1081280/1‑140 (MQ=255)

                                                           tGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAg                                                                           >  2:1141746/1‑140 (MQ=255)

                                                           tGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAg                                                                           >  2:1319125/1‑140 (MQ=255)

                                                            ggCAGGTCGTGTTCTCACGCGGTGTTG‑AAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGca                                                                         <  2:1285647/140‑1 (MQ=255)

                                                              cAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGcac                                                                        <  1:57821/140‑1 (MQ=255)

                                                              cAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGcac                                                                        <  2:79729/140‑1 (MQ=255)

                                                                ggTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCacac                                                                      >  1:793116/1‑140 (MQ=255)

                                                                 gTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACg                                                                     <  1:717775/140‑1 (MQ=255)

                                                                 gTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACg                                                                     <  1:427869/140‑1 (MQ=255)

                                                                  tCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGATTCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACg                                                                     >  2:1005555/1‑140 (MQ=255)

                                                                   cGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGtt                                                                   <  2:613015/140‑1 (MQ=255)

                                                                      gtTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTa                                                                <  1:647278/140‑1 (MQ=255)

                                                                        tctcACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTAcc                                                              <  1:950999/140‑1 (MQ=255)

                                                                        tctcACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTAcc                                                              <  2:570239/140‑1 (MQ=255)

                                                                        tctcACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTAcc                                                              <  2:457287/140‑1 (MQ=255)

                                                                            aCGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGc                                                                          >  2:1024822/1‑124 (MQ=255)

                                                                            aCGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGc                                                                          <  1:1024822/124‑1 (MQ=255)

                                                                            aCGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTAt                                                          <  2:209863/140‑1 (MQ=255)

                                                                            aCGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTAt                                                          <  2:638862/140‑1 (MQ=255)

                                                                            aCGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTAt                                                          <  2:568296/140‑1 (MQ=255)

                                                                            aCGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCGTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTAt                                                          >  2:1304202/1‑140 (MQ=255)

                                                                                ggTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTAc                                                      <  1:165994/140‑1 (MQ=255)

                                                                                           cGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAg                                           <  1:1141746/140‑1 (MQ=255)

                                                                                            ggCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCa                                                    <  1:36576/130‑1 (MQ=255)

                                                                                            ggCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCa                                                    >  2:36576/1‑130 (MQ=255)

                                                                                            ggCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGt                                          >  1:281551/1‑140 (MQ=255)

                                                                                            ggCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGt                                          >  2:983148/1‑140 (MQ=255)

                                                                                            ggCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGt                                          >  1:718436/1‑140 (MQ=255)

                                                                                            ggCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGt                                          >  1:1440423/1‑140 (MQ=255)

                                                                                              ccTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGttt                                        >  1:62396/1‑140 (MQ=255)

                                                                                                    aGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGAt                                  <  1:24199/140‑1 (MQ=255)

                                                                                                        gCTCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGAt                              <  1:965822/140‑1 (MQ=255)

                                                                                                          tCGCTAAAGGCTATTCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGAttt                            <  2:91648/140‑1 (MQ=255)

                                                                                                          tCGCTAAAGGCTATTCTATCGCCCACTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGAttt                            <  1:1086210/140‑1 (MQ=255)

                                                                                                                       ttCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGAcgcg               >  1:1173639/1‑140 (MQ=255)

                                                                                                                       ttCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGAcgcg               >  1:115828/1‑140 (MQ=255)

                                                                                                                       ttCTATCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGAcgcg               >  2:189290/1‑140 (MQ=255)

                                                                                                                            tCGCCCCCTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGACGCGTgcgc          <  2:281551/140‑1 (MQ=255)

                                                                                                                               cccccTCTCC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGACGCGTGCGCCaa       >  1:1263082/1‑140 (MQ=255)

                                                                                                                                    tctcC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGACGCGTGCGcc         <  1:709199/133‑1 (MQ=255)

                                                                                                                                    tctcC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGACGCGTGCGcc         >  2:709199/1‑133 (MQ=255)

                                                                                                                                    tctcC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGACGCGTGCGCCAAGtttt  <  1:1319125/140‑1 (MQ=255)

                                                                                                                                    tctcC‑GGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGACGCGTGCGCCAAGtttt  <  1:189290/140‑1 (MQ=255)

TGTTTACCTATTATCTGAATGCCTGTGCAGGTGCTTTCCGCGCCCGTGATATTCAGCTCTGGCAGGTCGTGTTCTCACGCGGTGTTGAAAACGGCCTTCGAGTGGCTCGCTAAAGGCTATTCTATCGCCCCCTCTCCGGGGGCGATTTCAGA‑TCAGGCTTCTGTGCCTGGTTGATTCATGGCATTTTCTCGTGCCGCCAGCACACGTTCTACCGTATCTACCACTGCCTGAGTTTGTGGATCGATTTCAATGTTGACGCGTGCGCCAAGTTTT  >  NC_000913/1742449‑1742721

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A