Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,750,067	A→G	N94N (AAT→AAC)	ydhU ←	putative cytochrome YdhU

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,750,067	0	A	G	100.0%	332.8 / NA	90	N94N (AAT→AAC)	ydhU	putative cytochrome YdhU
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (40/50); total (40/50)

ATAGTGGTGACCATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGATTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAATCTTCTCACCATGATCGGTGGCTGATTTCTTCACGCCACGAGCACGAAG  >  NC_000913/1749935‑1750201

aTAGTGGTGACCATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCa                                                                                                                                 >  1:333921/1‑140 (MQ=255)

   gtggtgACCATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGcc                                                                                                                              >  2:188692/1‑140 (MQ=255)

   gtggtgACCATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGcc                                                                                                                              >  2:1070274/1‑140 (MQ=255)

    tggtgACCATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGccc                                                                                                                             >  2:1611153/1‑140 (MQ=255)

     ggtgACCATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCa                                                                                                                            <  2:1471055/140‑1 (MQ=255)

     ggtgACCATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCa                                                                                                                            <  2:491762/140‑1 (MQ=255)

      gtgACCATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTAt                                                                                                                                   <  1:645652/132‑1 (MQ=255)

      gtgACCATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTAt                                                                                                                                   >  2:645652/1‑132 (MQ=255)

      gtgACCATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCAc                                                                                                                           <  2:519715/140‑1 (MQ=255)

       tgACCATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACt                                                                                                                          >  2:1686483/1‑140 (MQ=255)

         aCCATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTgg                                                                                                                        <  2:12053/140‑1 (MQ=255)

           cATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGcc                                                                                                                      >  2:986296/1‑140 (MQ=255)

           cATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGcc                                                                                                                      >  1:49958/1‑140 (MQ=255)

           cATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGcc                                                                                                                      <  1:1611153/140‑1 (MQ=255)

             ttATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAg                                                                                                                    <  2:1341414/140‑1 (MQ=255)

             ttATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAg                                                                                                                    <  1:1070274/140‑1 (MQ=255)

             ttATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAg                                                                                                                    <  2:1665814/140‑1 (MQ=255)

             ttATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAg                                                                                                                    <  1:634111/140‑1 (MQ=255)

               aTCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGca                                                                                                                  >  2:953525/1‑140 (MQ=255)

                tCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGcaa                                                                                                                 >  2:861707/1‑140 (MQ=255)

                 ccccAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGcaac                                                                                                                <  2:737330/140‑1 (MQ=255)

                 ccccAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGcaac                                                                                                                <  1:242069/140‑1 (MQ=255)

                  cccAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAGACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGcaaca                                                                                                               <  2:59650/140‑1 (MQ=255)

                  cccAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGcaaca                                                                                                               <  2:1575721/140‑1 (MQ=255)

                     aaCGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATa                                                                                                            >  2:430782/1‑140 (MQ=255)

                       cGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGcaaca                                                                                                               <  2:788258/135‑1 (MQ=255)

                       cGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGcaaca                                                                                                               >  1:788258/1‑135 (MQ=255)

                       cGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACa                                                                                                          >  2:413163/1‑140 (MQ=255)

                         gCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACaaa                                                                                                        <  1:974927/140‑1 (MQ=255)

                          cATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACTGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAag                                                                                                       >  1:1247975/1‑140 (MQ=255)

                          cATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACaaa                                                                                                        >  2:320419/1‑139 (MQ=255)

                          cATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACaaa                                                                                                        <  1:320419/139‑1 (MQ=255)

                          cATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAag                                                                                                       <  2:519188/140‑1 (MQ=255)

                          cATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAag                                                                                                       >  2:366117/1‑140 (MQ=255)

                          cATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAag                                                                                                       >  1:17146/1‑140 (MQ=255)

                           aTTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAaga                                                                                                      >  2:1119719/1‑140 (MQ=255)

                               aTCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTaa                                                                                                  <  1:953525/140‑1 (MQ=255)

                               aTCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTaa                                                                                                  <  1:270602/140‑1 (MQ=255)

                               aTCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTaa                                                                                                  <  2:17146/140‑1 (MQ=255)

                               aTCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTaa                                                                                                  <  2:1026850/140‑1 (MQ=255)

                                 cAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACg                                                                                                <  2:629674/140‑1 (MQ=255)

                                    cacaAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCAt                                                                                             >  1:95755/1‑140 (MQ=255)

                                         aGCCGAGCCAGCATGCCGGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTaa                                                                                                  >  2:1203937/1‑130 (MQ=255)

                                         aGCCGAGCCAGCATGCCGGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTaa                                                                                                  <  1:1203937/130‑1 (MQ=255)

                                         aGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGAc                                                                                        <  2:201748/140‑1 (MQ=255)

                                         aGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGAc                                                                                        <  2:923536/140‑1 (MQ=255)

                                         aGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGAc                                                                                        >  1:1255042/1‑140 (MQ=255)

                                         aGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGAc                                                                                        >  2:1304299/1‑140 (MQ=255)

                                         aGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGAc                                                                                        >  2:1651946/1‑140 (MQ=255)

                                         aGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGAc                                                                                        >  1:201748/1‑140 (MQ=255)

                                         aGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGAc                                                                                        >  1:206633/1‑140 (MQ=255)

                                         aGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGAc                                                                                        >  1:1527216/1‑140 (MQ=255)

                                           ccGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCa                                                                                      <  2:49958/140‑1 (MQ=255)

                                            cGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAg                                                                                     >  2:960603/1‑140 (MQ=255)

                                            cGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAg                                                                                     <  1:580302/140‑1 (MQ=255)

                                              aGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGAc                                                                                        >  2:1302891/1‑135 (MQ=255)

                                              aGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGAc                                                                                        <  1:1302891/135‑1 (MQ=255)

                                              aGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTg                                                                                   >  1:1635007/1‑140 (MQ=255)

                                              aGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTg                                                                                   >  2:1566370/1‑140 (MQ=255)

                                              aGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTg                                                                                   >  1:1451771/1‑140 (MQ=255)

                                              aGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTg                                                                                   >  1:97428/1‑140 (MQ=255)

                                                ccAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGcc                                                                                 <  2:1451771/140‑1 (MQ=255)

                                                 cAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCa                                                                                <  2:1255042/140‑1 (MQ=255)

                                                    cATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATaa                                                                             >  1:189524/1‑140 (MQ=255)

                                                         cAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGa                                                                        <  2:206633/140‑1 (MQ=255)

                                                                aaaaaTCCGCAAACTTCATGCACTGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCttt                                                                 <  2:1247975/140‑1 (MQ=255)

                                                                 aaaaTCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTg                                                                <  2:1635007/140‑1 (MQ=255)

                                                                 aaaaTCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTg                                                                >  1:1627879/1‑140 (MQ=255)

                                                                 aaaaTCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTg                                                                <  1:718037/140‑1 (MQ=255)

                                                                   aaTCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCt                                                              <  2:333921/140‑1 (MQ=255)

                                                                     tCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGt                                                            <  1:1155773/140‑1 (MQ=255)

                                                                             cTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATaa                                                    <  2:1527216/140‑1 (MQ=255)

                                                                                  tGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAAtctt                                               <  1:960603/140‑1 (MQ=255)

                                                                                  tGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAAtctt                                               <  2:189524/140‑1 (MQ=255)

                                                                                   gCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAAtcttc                                              >  1:1544896/1‑140 (MQ=255)

                                                                                        gCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAATCTTCTCAcc                                         >  1:1305667/1‑140 (MQ=255)

                                                                                        gCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAATCTTCTCAcc                                         <  2:697669/140‑1 (MQ=255)

                                                                                          aaCCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAATCTTCTCACCAt                                       >  1:70206/1‑140 (MQ=255)

                                                                                             cAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAATCTTCTCACCATGAt                                    <  1:1566370/140‑1 (MQ=255)

                                                                                                 cTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAATCTTCTCACCATGATCgg                                 <  2:1511301/139‑1 (MQ=255)

                                                                                                 cTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAATCTTCTCACCATGATCgg                                 >  1:1511301/1‑139 (MQ=255)

                                                                                                 cTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAATCTTCTCACCATGATCGGt                                >  1:982767/1‑140 (MQ=255)

                                                                                                       aCCGCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAATCTTCTCACCATGATCGGTGGCTGa                          <  1:986296/140‑1 (MQ=255)

                                                                                                          gCAGTTGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAATCTTCTCACCATGATCGGTGGCTGAttt                       <  2:1305667/140‑1 (MQ=255)

                                                                                                              ttGCGCCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAATCTTCTCACCATGATCGGTGGCTGATttcttc                   >  2:1415456/1‑140 (MQ=255)

                                                                                                                gcgcCCACCATCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAATCTTCTCACCATGATCGGTGGCTGATTTCTTCAc                 <  2:95755/140‑1 (MQ=255)

                                                                                                                  gagacataTCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAATCTTCTCACCATGATCGGTGGCTGATTTCTTCACGc               <  1:465893/133‑1 (MQ=255)

                                                                                                                       ccaTCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAATCTTCTCACCATGATCGGTGGCTGATTTCTTCACGCCACGa          <  2:571251/140‑1 (MQ=255)

                                                                                                                          tCGCAAAGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAATCTTCTCACCATGATCGGTGGCTGATTTCTTCACGCCACGAGCa       <  1:472123/140‑1 (MQ=255)

                                                                                                                               aaGTGGTTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAATCTTCTCACCATGATCGGTGGCTGATTTCTTCACGCCACGAGCACGAAg  <  2:1544896/140‑1 (MQ=255)

ATAGTGGTGACCATTATCCCCAACGGCATTGATCAGCACAAAGCCGAGCCAGCATGCCAGTAACAAAAATCCGCAAACTTCATGCACCGCAACCAGACTTTTAACCGCAGTTGCGCCCACCATCGCAAAGTGATTTATCAGCCCACTGGCCAGCAACAATACAAAGAGTAACGCATTCGACCAGTGCCATAATCTGACCGCTTTGCTGTAAAGATAAATCTTCTCACCATGATCGGTGGCTGATTTCTTCACGCCACGAGCACGAAG  >  NC_000913/1749935‑1750201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A