Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,902,517 G→A G157E (GGG→GAG)  manX → mannose‑specific PTS enzyme IIAB component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,902,5170GA100.0% 344.5 / NA 96G157E (GGG→GAG) manXmannose‑specific PTS enzyme IIAB component
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (41/55);  total (41/55)

GAACTGGTGGCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGTATTATTGTTGTTAGTGATGAAGTGGCTGCGGATACC  >  NC_000913/1902384‑1902653
                                                                                                                                     |                                                                                                                                        
gaACTGGTGGCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCaaa                                                                                                                                    <  2:1268097/140‑1 (MQ=255)
 aaCTGGTGGCACTGGCAGTAGAAACGGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAAc                                                                                                                                   <  1:135000/140‑1 (MQ=255)
 aaCTGGTGGCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAAc                                                                                                                                   <  1:1260568/140‑1 (MQ=255)
   cTGGTGGCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGa                                                                                                                                 <  2:451106/140‑1 (MQ=255)
   cTGGTGGCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGa                                                                                                                                 <  1:152904/140‑1 (MQ=255)
   cTGGTGGCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGa                                                                                                                                 >  2:1372698/1‑140 (MQ=255)
    tggtggCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGAc                                                                                                                                <  1:1436780/140‑1 (MQ=255)
      gtggCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTa                                                                                                                              >  1:498194/1‑140 (MQ=255)
      gtggCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTa                                                                                                                              >  1:323825/1‑140 (MQ=255)
      gtggCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTa                                                                                                                              >  2:1198220/1‑140 (MQ=255)
      gtggCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTa                                                                                                                              >  1:1439348/1‑140 (MQ=255)
      gtggCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTa                                                                                                                              >  2:646666/1‑140 (MQ=255)
        ggCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACa                                                                                                                            <  2:1439348/140‑1 (MQ=255)
        ggCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACa                                                                                                                            <  2:229742/140‑1 (MQ=255)
        ggCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACa                                                                                                                            <  2:323825/140‑1 (MQ=255)
        ggCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACa                                                                                                                            <  2:645544/140‑1 (MQ=255)
        ggCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACa                                                                                                                            <  1:866276/140‑1 (MQ=255)
          cACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATg                                                                                                                          <  1:646666/140‑1 (MQ=255)
           aCTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAAc                                                                                                                                   >  2:232733/1‑130 (MQ=255)
           aCTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAAc                                                                                                                                   <  1:232733/130‑1 (MQ=255)
             tGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGtt                                                                                                                       >  1:1325304/1‑140 (MQ=255)
                cAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGa                                                                                                                                 <  2:1087005/127‑1 (MQ=255)
                cAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGa                                                                                                                                 >  1:1087005/1‑127 (MQ=255)
                cAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTAtt                                                                                                                    >  1:1214272/1‑140 (MQ=255)
                   tAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGc                                                                                                                 <  2:244342/140‑1 (MQ=255)
                    aGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGcc                                                                                                                <  2:498194/140‑1 (MQ=255)
                       aaCAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTg                                                                                                             >  2:511923/1‑140 (MQ=255)
                         cAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCTTTgcg                                                                                                           >  2:673255/1‑140 (MQ=255)
                          aGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTgcgc                                                                                                          <  1:1372698/140‑1 (MQ=255)
                           ggCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTAt                                                                                                                     >  1:1377629/1‑128 (MQ=255)
                           ggCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTAt                                                                                                                     <  2:1377629/128‑1 (MQ=255)
                           ggCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGcgcg                                                                                                         >  2:1403829/1‑140 (MQ=255)
                            gCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGt                                                                                                        >  2:338945/1‑140 (MQ=255)
                            gCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGt                                                                                                        >  1:939094/1‑140 (MQ=255)
                             ccGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTa                                                                                                       >  2:1164435/1‑140 (MQ=255)
                             ccGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTa                                                                                                       >  1:884730/1‑140 (MQ=255)
                                tGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATcg                                                                                                    >  1:22754/1‑140 (MQ=255)
                                tGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATcg                                                                                                    >  1:654605/1‑140 (MQ=255)
                                 gAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATcga                                                                                                   >  2:723753/1‑140 (MQ=255)
                                 gAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATAGTTATTGGCCTTGCGCGTATcga                                                                                                   <  1:673255/140‑1 (MQ=255)
                                  aaGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATcgac                                                                                                  >  2:674130/1‑140 (MQ=255)
                                    ggCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATcgacga                                                                                                <  2:410710/140‑1 (MQ=255)
                                      cGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGAcc                                                                                              >  1:186607/1‑140 (MQ=255)
                                      cGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGAcc                                                                                              >  2:417176/1‑140 (MQ=255)
                                        tGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGt                                                                                            >  2:69104/1‑140 (MQ=255)
                                        tGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGt                                                                                            >  1:471983/1‑140 (MQ=255)
                                         gAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTc                                                                                           <  2:884730/140‑1 (MQ=255)
                                          aaaGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCATACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCt                                                                                          <  2:1325304/140‑1 (MQ=255)
                                          aaaGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCt                                                                                          >  2:935590/1‑140 (MQ=255)
                                               aCTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTc                                                                                     >  1:887462/1‑140 (MQ=255)
                                                  gAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACg                                                                                  <  2:939094/140‑1 (MQ=255)
                                                    aaGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGt                                                                                <  1:224689/140‑1 (MQ=255)
                                                    aaGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGt                                                                                >  1:562937/1‑140 (MQ=255)
                                                     aGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTc                                                                               <  2:939336/140‑1 (MQ=255)
                                                     aGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTc                                                                               <  2:887462/140‑1 (MQ=255)
                                                         aaaCCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGt                                                                           <  1:674130/140‑1 (MQ=255)
                                                                 tGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCAccc                                                                   >  2:773476/1‑140 (MQ=255)
                                                                 tGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCAccc                                                                   >  2:167101/1‑140 (MQ=255)
                                                                  gAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCg                                                                  <  2:562937/140‑1 (MQ=255)
                                                                  gAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCg                                                                  <  2:186607/140‑1 (MQ=255)
                                                                          cgcgCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCa                                                          >  2:1485326/1‑140 (MQ=255)
                                                                           gcgcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCaa                                                         <  1:1403829/140‑1 (MQ=255)
                                                                            cgcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCaaa                                                        <  1:424829/140‑1 (MQ=255)
                                                                            cgcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCaaa                                                        <  2:215917/140‑1 (MQ=255)
                                                                             gcCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAg                                                       <  2:446119/140‑1 (MQ=255)
                                                                                aGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGaaa                                                    <  1:822196/140‑1 (MQ=255)
                                                                                  cACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAAcc                                                  <  2:1440868/140‑1 (MQ=255)
                                                                                  cACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAAcc                                                  >  2:1214419/1‑140 (MQ=255)
                                                                                     ccGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAAt                                               <  1:723753/140‑1 (MQ=255)
                                                                                       gCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGa                                                             <  2:1026179/124‑1 (MQ=255)
                                                                                       gCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGa                                                             >  1:1026179/1‑124 (MQ=255)
                                                                                       gCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGt                                             <  1:1485326/140‑1 (MQ=255)
                                                                                       gCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGt                                             >  1:857074/1‑140 (MQ=255)
                                                                                       gCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGt                                             <  1:69104/140‑1 (MQ=255)
                                                                                        cTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGtc                                            <  2:1220480/140‑1 (MQ=255)
                                                                                          gCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGtctc                                          <  2:63566/140‑1 (MQ=255)
                                                                                           ccGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTcc                                         <  2:654605/140‑1 (MQ=255)
                                                                                             gcagcaCCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCg                                       <  1:1164435/140‑1 (MQ=255)
                                                                                               agcaCCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGta                                     <  2:807756/140‑1 (MQ=255)
                                                                                               agcaCCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGta                                     <  1:167101/140‑1 (MQ=255)
                                                                                               agcaCCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGta                                     <  2:1214272/140‑1 (MQ=255)
                                                                                               agcaCCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGta                                     <  1:773476/140‑1 (MQ=255)
                                                                                                 caCCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGtatt                                   >  2:1027802/1‑140 (MQ=255)
                                                                                                   ccAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCa                                                 >  2:903258/1‑124 (MQ=255)
                                                                                                   ccAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCa                                                 <  1:903258/124‑1 (MQ=255)
                                                                                                   ccAAAAGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGtattat                                 <  1:338945/140‑1 (MQ=255)
                                                                                                     aaaaGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGTATTAttg                               <  1:1214419/140‑1 (MQ=255)
                                                                                                     aaaaGCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGTATTAttg                               <  1:511923/140‑1 (MQ=255)
                                                                                                         gCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGTATTATtgttgt                           <  2:471983/140‑1 (MQ=255)
                                                                                                         gCGGCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGTATTATtgttgt                           <  2:149138/140‑1 (MQ=255)
                                                                                                           ggCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGTattatt                                >  1:901089/1‑133 (MQ=255)
                                                                                                           ggCTCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGTattatt                                <  2:901089/133‑1 (MQ=255)
                                                                                                              tCCAACTCCGGCAAAACCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGTATTATTGTTGTTAGtg                      >  2:1148460/1‑140 (MQ=255)
                                                                                                                            aaCCAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGTATTATTGTTGTTAGTGATGAAGTGGCTGCg        >  2:653425/1‑140 (MQ=255)
                                                                                                                              ccAATGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGTATTATTGTTGTTAGTGATGAAGTGGCTGCGGa      >  2:673410/1‑140 (MQ=255)
                                                                                                                                  tGGAGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGTATTATTGTTGTTAGTGATGAAGTGGCTGCGGATAcc  <  1:935590/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                        
GAACTGGTGGCACTGGCAGTAGAAACAGGCCGTGAAGGCGTGAAAGCACTGAAAGCCAAACCGGTTGAAAAAGCCGCGCCAGCACCCGCTGCCGCAGCACCAAAAGCGGCTCCAACTCCGGCAAAACCAATGGGGCCAAACGACTACATGGTTATTGGCCTTGCGCGTATCGACGACCGTCTGATTCACGGTCAGGTCGCCACCCGCTGGACCAAAGAAACCAATGTCTCCCGTATTATTGTTGTTAGTGATGAAGTGGCTGCGGATACC  >  NC_000913/1902384‑1902653

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A