Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F28 I1 R1
|
151 |
87.4 |
2971636 |
99.2% |
2947862 |
138.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,018,530 |
(C)6→7 |
coding (145/1128 nt) |
fliK → |
flagellar hook‑length control protein |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,018,524 | 1 | . | C | 100.0%
| 180.0
/ NA
| 51 | A47P (GCC→CCC) | fliK | flagellar hook‑length control protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (26/25); total (26/25) |
AATGATTCGCTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAACGACGAA > NC_000913/2018385‑2018658
|
aaTGATTCGCTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCgg > 2:168065/1‑140 (MQ=255)
ttCGCTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑ccccc > 1:210000/1‑140 (MQ=255)
cGCTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑ccccccc > 2:366791/1‑139 (MQ=255)
cTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑cccccccag > 2:400845/1‑137 (MQ=255)
ttAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑cccccccagt > 2:1170408/1‑136 (MQ=255)
gATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑Ca < 1:366791/140‑1 (MQ=255)
aTTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑Caa < 1:281905/140‑1 (MQ=255)
ttACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAAc < 1:1115425/140‑1 (MQ=255)
tACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACa > 2:665994/1‑140 (MQ=255)
caccacATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACaaaa > 2:971838/1‑140 (MQ=255)
ccacATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAgg > 1:529175/1‑140 (MQ=255)
acaTTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCg < 1:406632/140‑1 (MQ=255)
acaTTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCg < 1:328298/140‑1 (MQ=255)
acaTTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCg < 1:1082481/140‑1 (MQ=255)
caTTGCCTGGCGGCAAACCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGAGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGa > 2:1472153/1‑140 (MQ=255)
gCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCg < 1:614288/140‑1 (MQ=255)
gCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCg < 2:597996/140‑1 (MQ=255)
ccTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGc > 1:91613/1‑140 (MQ=255)
tGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTg > 1:1462043/1‑140 (MQ=255)
ggcggcAAAGCCAGCNATGCTGCACAAGATTTTCTCGCGGTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGa > 1:1105453/1‑140 (MQ=255)
cAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGc > 1:375223/1‑140 (MQ=255)
cAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGc < 1:1170408/140‑1 (MQ=255)
aaaGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCg < 1:347011/140‑1 (MQ=255)
aaGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGa > 1:439696/1‑140 (MQ=255)
aGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGat < 1:400845/140‑1 (MQ=255)
tgcACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGAc > 1:337348/1‑140 (MQ=255)
caAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACgcgc > 2:1379226/1‑140 (MQ=255)
aaGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGca < 2:91613/140‑1 (MQ=255)
gATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGcaac > 1:1111192/1‑140 (MQ=255)
gATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGcaac > 1:602640/1‑140 (MQ=255)
gATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGcaac > 1:607804/1‑140 (MQ=255)
aTTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGcaaca > 1:264338/1‑140 (MQ=255)
ttttCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGcaacaa > 1:264480/1‑140 (MQ=255)
tttCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAg < 1:971838/140‑1 (MQ=255)
tttCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAg < 2:1462043/140‑1 (MQ=255)
tctcGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGcaa > 2:895175/1‑134 (MQ=255)
tctcGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGcaa < 1:895175/134‑1 (MQ=255)
tcGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTaa > 1:1467255/1‑140 (MQ=255)
gttgttGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTa < 1:1379226/140‑1 (MQ=255)
aGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATcc < 2:337348/140‑1 (MQ=255)
cGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCt < 1:665994/140‑1 (MQ=255)
cGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCt < 2:792992/140‑1 (MQ=255)
cATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGAt > 1:331200/1‑131 (MQ=255)
cATTAGCAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGAt < 2:331200/131‑1 (MQ=255)
aTTAGCAGGCGAGACAACTACCGACAAAGCGGCCCCCCCCAGTTGCTGGTGGCAACAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCtgt < 1:669674/140‑1 (MQ=255)
cAGGCGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGACCCCTGTGGATGAAac < 2:264338/140‑1 (MQ=255)
cGAGACAACTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCg > 2:299975/1‑140 (MQ=255)
cTACCGACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGtcat < 2:602640/140‑1 (MQ=255)
gACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAacg > 1:721090/1‑140 (MQ=255)
gACAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAacg > 1:486238/1‑140 (MQ=255)
aCAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCg < 2:530086/126‑1 (MQ=255)
aCAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCg > 1:530086/1‑126 (MQ=255)
aCAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAacga > 1:254111/1‑140 (MQ=255)
aCAAAGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAacga > 2:773668/1‑140 (MQ=255)
aGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGc < 1:889717/123‑1 (MQ=255)
aGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGc > 2:889717/1‑123 (MQ=255)
aGCGGC‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAACGACGaa > 1:654137/1‑140 (MQ=255)
|
AATGATTCGCTTAGCGCCCTTGATTACCGCCGACGTTGACACCACCACATTGCCTGGCGGCAAAGCCAGCGATGCTGCACAAGATTTTCTCGCGTTGTTGAGCGAAGCATTAGCAGGCGAGACAACTACCGACAAAGCGG‑‑CCCCCCAGTTGCTGGTGG‑‑‑CAACAGATAAGCCCACGACAAAAGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAACGACGAA > NC_000913/2018385‑2018658
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A