Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,158,221 G→A G987R (GGG→AGG)  mdtB → multidrug efflux pump RND permease subunit MdtB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,158,2210GA100.0% 252.7 / NA 71G987R (GGG→AGG) mdtBmultidrug efflux pump RND permease subunit MdtB
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (31/40);  total (31/40)

TCGCGCTGGCTGCTGAGCGCGAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCGGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCATTGTGGACCAAAAG  >  NC_000913/2158084‑2158354
                                                                                                                                         |                                                                                                                                     
tCGCGCTGGCTGCTGAGCGCGAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGTGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCagg                                                                                                                                     >  2:534421/1‑140 (MQ=255)
 cgcgCTGGCTGCTGAGCGCGAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCaggg                                                                                                                                    >  1:940345/1‑140 (MQ=255)
       ggctgCTGAGCGCGAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGgcg                                                                                                                              <  1:428607/140‑1 (MQ=255)
        gctgctGAGCGCGAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGgcgc                                                                                                                             >  2:445127/1‑140 (MQ=255)
           gctgAGCGCGAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGa                                                                                                                          >  2:799059/1‑140 (MQ=255)
            ctgAACGCGAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCAGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGaa                                                                                                                         <  2:1193494/140‑1 (MQ=255)
             tgAGCGCGAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAAc                                                                                                                        >  1:594580/1‑140 (MQ=255)
                 cgcgAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGcg                                                                                                                    <  1:928202/140‑1 (MQ=255)
                  gcgAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGcgt                                                                                                                   <  1:780997/140‑1 (MQ=255)
                  gcgAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGcgt                                                                                                                   <  1:734738/140‑1 (MQ=255)
                  gcgAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGcgt                                                                                                                   <  1:551944/140‑1 (MQ=255)
                  gcgAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGcgt                                                                                                                   >  2:1077910/1‑140 (MQ=255)
                  gcgAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGcgt                                                                                                                   <  1:445127/140‑1 (MQ=255)
                  gcgAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGcgt                                                                                                                   <  2:1217638/140‑1 (MQ=255)
                  gcgAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGcgt                                                                                                                   >  2:626485/1‑140 (MQ=255)
                   cgAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGcgtc                                                                                                                  <  1:613998/140‑1 (MQ=255)
                     aGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGcgtcgt                                                                                                                <  1:617637/140‑1 (MQ=255)
                      gCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCgtcgtc                                                                                                               >  2:678896/1‑140 (MQ=255)
                        aaGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCg                                                                                                             <  2:940345/140‑1 (MQ=255)
                         aGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGt                                                                                                            <  2:307240/140‑1 (MQ=255)
                          ggCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGtt                                                                                                           <  1:34276/140‑1 (MQ=255)
                          ggCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGtt                                                                                                           <  1:506823/140‑1 (MQ=255)
                          ggCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGtt                                                                                                           <  1:302454/140‑1 (MQ=255)
                               gTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCg                                                                                                             >  2:166037/1‑133 (MQ=255)
                               gTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCg                                                                                                             <  1:166037/133‑1 (MQ=255)
                                tCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTAt                                                                                                     >  1:973184/1‑140 (MQ=255)
                                    cgcgcgAGGCAATCTACCAAGCTTGTCTGTTCCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCCCTGCCGCTGCTGTAGAGTACCAAGGGCGGCGCGGAACTGCTGCGTCCGTTAGGTATCGGc                                                                                                 >  2:716797/1‑140 (MQ=255)
                                          aGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTc                                                                                           <  2:1471689/140‑1 (MQ=255)
                                           ggCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTcg                                                                                          <  2:1092271/140‑1 (MQ=255)
                                                  tACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCt                                                                                   <  1:678896/140‑1 (MQ=255)
                                                     cAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGAt                                                                                <  2:326391/140‑1 (MQ=255)
                                                     cAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGAt                                                                                >  2:18266/1‑140 (MQ=255)
                                                       ggCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTg                                                                              >  2:724865/1‑140 (MQ=255)
                                                       ggCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTg                                                                              <  1:333586/140‑1 (MQ=255)
                                                        gCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGt                                                                             >  2:304754/1‑140 (MQ=255)
                                                        gCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGt                                                                             <  1:307526/140‑1 (MQ=255)
                                                        gCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGt                                                                             <  1:922208/140‑1 (MQ=255)
                                                          ttGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCa                                                                           >  1:82816/1‑140 (MQ=255)
                                                               tGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAg                                                                      >  2:1381116/1‑140 (MQ=255)
                                                                  tGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGt                                                                             <  2:915551/130‑1 (MQ=255)
                                                                  tGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGt                                                                             >  1:915551/1‑130 (MQ=255)
                                                                  tGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTg                                                                   >  1:377837/1‑140 (MQ=255)
                                                                  tGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTg                                                                   >  2:493463/1‑140 (MQ=255)
                                                                     gTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTg                                                                <  2:82816/140‑1 (MQ=255)
                                                                      ttttCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGa                                                               <  1:1381116/140‑1 (MQ=255)
                                                                      ttttCATCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGa                                                               <  2:776577/140‑1 (MQ=255)
                                                                       tttCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGAc                                                              <  2:594580/140‑1 (MQ=255)
                                                                        ttCGTCCGATCCTGATGACCACTCTGGTGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACg                                                             <  1:534421/140‑1 (MQ=255)
                                                                        ttCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACg                                                             <  1:626485/140‑1 (MQ=255)
                                                                        ttCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACg                                                             <  2:377837/140‑1 (MQ=255)
                                                                        ttCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACg                                                             <  1:493463/140‑1 (MQ=255)
                                                                           gTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTg                                                          >  1:901787/1‑140 (MQ=255)
                                                                               gATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTa                                                      >  2:245594/1‑140 (MQ=255)
                                                                                 tCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGCCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTAcc                                                    <  2:973184/140‑1 (MQ=255)
                                                                                    tgatgaCCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACg                                                 <  1:326882/140‑1 (MQ=255)
                                                                                    tgatgaCCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACg                                                 <  2:631687/140‑1 (MQ=255)
                                                                                     gatgaCCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGc                                                <  2:995692/140‑1 (MQ=255)
                                                                                           cACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGa                                          >  2:936644/1‑140 (MQ=255)
                                                                                           cACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGa                                          >  2:1322216/1‑140 (MQ=255)
                                                                                             ctctGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGatt                                        >  2:702259/1‑140 (MQ=255)
                                                                                             ctctGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGatt                                        >  2:809323/1‑140 (MQ=255)
                                                                                             ctctGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGatt                                        >  2:826478/1‑140 (MQ=255)
                                                                                                       tctGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGt                              >  1:206918/1‑140 (MQ=255)
                                                                                                        ctGCTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGtt                             >  2:892187/1‑140 (MQ=255)
                                                                                                           cTTGGCGCGCTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGa                          <  2:901787/140‑1 (MQ=255)
                                                                                                                 gcgcTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGa                          >  1:196626/1‑134 (MQ=255)
                                                                                                                 gcgcTGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGa                          <  2:196626/134‑1 (MQ=255)
                                                                                                                     tGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCa                <  1:809323/140‑1 (MQ=255)
                                                                                                                     tGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCa                >  2:1451045/1‑140 (MQ=255)
                                                                                                                     tGCCGCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCa                >  2:167950/1‑140 (MQ=255)
                                                                                                                         gCTGATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCATtgt            <  1:230337/140‑1 (MQ=255)
                                                                                                                            gATGTTGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCATTGTGGa         >  2:271744/1‑140 (MQ=255)
                                                                                                                                 tGAGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCATTGTGGACCaaa    >  2:329921/1‑140 (MQ=255)
                                                                                                                                   aGTACCAGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCATTGTGGACCAAAAg  >  1:25689/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                     
TCGCGCTGGCTGCTGAGCGCGAGCAAGGCATGTCGCCGCGCGAGGCAATCTACCAGGCTTGTCTGTTGCGTTTTCGTCCGATCCTGATGACCACTCTGGCGGCTCTGCTTGGCGCGCTGCCGCTGATGTTGAGTACCGGGGTCGGCGCGGAACTGCGTCGTCCGTTAGGTATCGGCATGGTCGGCGGTCTGATTGTCAGCCAGGTGCTGACGCTGTTTACCACGCCGGTGATTTATTTGCTGTTCGACCGCCTGGCATTGTGGACCAAAAG  >  NC_000913/2158084‑2158354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A