Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,214,473 T→C T58A (ACC→GCC)  btsS ← high‑affinity pyruvate receptor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,214,4730TC100.0% 242.2 / NA 68T58A (ACC→GCC) btsShigh‑affinity pyruvate receptor
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (28/40);  total (28/40)

CCCCATCGAATATCGATGTAAGCCGCCGGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGTGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCATGCAATGACTAAAAAAACGCACAT  >  NC_000913/2214336‑2214605
                                                                                                                                         |                                                                                                                                    
ccccATCGAATATCGATGTAAGCCGCCGGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAA‑‑‑GCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCa                                                                                                                                 <  1:1095760/140‑1 (MQ=255)
   cATCGAATATCGATGTAAGCCGCCGGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCa                                                                                                                                 <  1:321758/140‑1 (MQ=255)
   cATCGAATATCGATGTAAGCCGCCGGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCa                                                                                                                                 >  2:1207927/1‑140 (MQ=255)
   cATCGAATATCGATGTAAGCCGCCGGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCa                                                                                                                                 >  1:1177589/1‑140 (MQ=255)
   cATCGAATATCGATGTAAGCCGCCGGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCa                                                                                                                                 <  2:1177589/140‑1 (MQ=255)
   cATCGAATATCGATGTAAGCCGCCGGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCa                                                                                                                                 <  1:61554/140‑1 (MQ=255)
   cATCGAATATCGATGTAAGCCGCCGGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCa                                                                                                                                 <  1:1283105/140‑1 (MQ=255)
   cATCGAATATCGATGTAAGCCGCCGGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGGCAATGTGCAACCCAAACCAGGCGCCCa                                                                                                                                 <  1:822679/140‑1 (MQ=255)
       gAATATCGATAAAAGCCGCCGGACAGCCCAACCAGCCCACCGACGTCCGGACCGCCGAGTAAGCCCCCCATTACCGCGCCTATTGCACGGGAATTGGCAATATCATCGTCAATGAACAACCCAAACCAGGCGCCCatgat                                                                                                                             >  2:1457109/1‑140 (MQ=255)
        aaTATCGATGTAAGCCGCCGGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCatgatg                                                                                                                            <  2:434179/140‑1 (MQ=255)
            tCGATGTAAGCCGCCGGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCaga                                                                                                                        <  1:473112/140‑1 (MQ=255)
               aTGTAAGCCGCCGGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCagaaga                                                                                                                     >  1:898317/1‑140 (MQ=255)
                tGTAAGCCGCCGGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCa                                                                                                                                 <  1:1088231/127‑1 (MQ=255)
                tGTAAGCCGCCGGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCa                                                                                                                                 >  2:1088231/1‑127 (MQ=255)
                    aGCCGCCGGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGaa                                                                                                                >  2:1165076/1‑140 (MQ=255)
                       cgccgGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAg                                                                                                             >  1:525456/1‑140 (MQ=255)
                         ccgGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGAc                                                                                                           >  2:929802/1‑140 (MQ=255)
                                      ccAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAgaga                                                                                              >  2:1011256/1‑140 (MQ=255)
                                           ccACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAAttt                                                                                         >  2:1139306/1‑140 (MQ=255)
                                               cgacgaCCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGc                                                                                     >  1:168134/1‑140 (MQ=255)
                                                              cgAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTg                                                                      >  2:692376/1‑140 (MQ=255)
                                                                aGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGAc                                                                    <  2:586581/140‑1 (MQ=255)
                                                                aGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGAc                                                                    >  2:1231197/1‑140 (MQ=255)
                                                                 gTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGAcc                                                                   <  1:1231197/140‑1 (MQ=255)
                                                                 gTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGAcc                                                                   <  1:1139306/140‑1 (MQ=255)
                                                                       cgccCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCAtt                                                             <  1:1207927/140‑1 (MQ=255)
                                                                        gccCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTa                                                            <  1:419290/140‑1 (MQ=255)
                                                                        gccCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTa                                                            <  2:168134/140‑1 (MQ=255)
                                                                        gccCATATCCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTa                                                            <  1:1457109/140‑1 (MQ=255)
                                                                         cccATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTaa                                                           >  1:373991/1‑140 (MQ=255)
                                                                         cccATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTaa                                                           <  1:1122278/140‑1 (MQ=255)
                                                                         cccATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTaa                                                           <  1:688339/140‑1 (MQ=255)
                                                                          ccATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTg                                                                 >  1:59557/1‑133 (MQ=255)
                                                                          ccATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTg                                                                 <  2:59557/133‑1 (MQ=255)
                                                                          ccATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAAc                                                          <  1:1246278/140‑1 (MQ=255)
                                                                            aTTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACgg                                                        <  2:373991/140‑1 (MQ=255)
                                                                             ttACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGt                                                       <  2:898317/140‑1 (MQ=255)
                                                                                   cgcCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGaat                                                 >  1:203573/1‑140 (MQ=255)
                                                                                    gcCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGaata                                                >  2:851009/1‑140 (MQ=255)
                                                                                      cTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGaataat                                              >  2:696470/1‑140 (MQ=255)
                                                                                        aTCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAAc                                                          <  1:1851/126‑1 (MQ=255)
                                                                                        aTCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAAc                                                          >  2:1851/1‑126 (MQ=255)
                                                                                        aTCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGt                                                       <  1:1236612/129‑1 (MQ=255)
                                                                                        aTCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGt                                                       >  2:588813/1‑129 (MQ=255)
                                                                                        aTCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGt                                                       <  1:588813/129‑1 (MQ=255)
                                                                                        aTCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGt                                                       >  2:1236612/1‑129 (MQ=255)
                                                                                          cGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCg                                          <  2:203573/140‑1 (MQ=255)
                                                                                             aCGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGttt                                       <  1:769665/140‑1 (MQ=255)
                                                                                             aCGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGttt                                       <  1:696470/140‑1 (MQ=255)
                                                                                             aCGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGttt                                       <  1:851009/140‑1 (MQ=255)
                                                                                                    ttGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCAt                                <  1:929802/140‑1 (MQ=255)
                                                                                                     tGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGCAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCAtt                               <  2:1332427/140‑1 (MQ=255)
                                                                                                         aaTAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAAcc                           >  1:978802/1‑140 (MQ=255)
                                                                                                          aTAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCa                          >  1:154523/1‑140 (MQ=255)
                                                                                                           tAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCAt                         >  2:1388845/1‑140 (MQ=255)
                                                                                                           tAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCAt                         >  1:1245516/1‑140 (MQ=255)
                                                                                                           tAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCAt                         >  2:1154307/1‑140 (MQ=255)
                                                                                                           tAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCAt                         >  1:238482/1‑140 (MQ=255)
                                                                                                           tAGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCAt                         >  1:50446/1‑140 (MQ=255)
                                                                                                            aGAATCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCATg                        <  2:760068/140‑1 (MQ=255)
                                                                                                              aaTCGTCAATGTGCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCATGCa                      <  1:1388845/140‑1 (MQ=255)
                                                                                                                        gtgCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCATGCAATGACTaaaa            <  1:1165076/140‑1 (MQ=255)
                                                                                                                        gtgCAACCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCATGCAATGACTaaaa            <  1:692376/140‑1 (MQ=255)
                                                                                                                             aCCCAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCATGCAATGACTAAAAAAACg       <  1:1011256/140‑1 (MQ=255)
                                                                                                                              cccAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCATGCAATGACTAAAAAAACGc      <  2:154523/140‑1 (MQ=255)
                                                                                                                                cAAACCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCATGCAATGACTAAAAAAACGcac    <  2:525456/140‑1 (MQ=255)
                                                                                                                                 aaaCCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCATGCAATGACTAAAAAAACGcaca   <  2:50446/140‑1 (MQ=255)
                                                                                                                                  aaCCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCATGCAATGACTAAAAAAACGCACAt  >  2:1159613/1‑140 (MQ=255)
                                                                                                                                  aaCCAGGCGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCATGCAATGACTAAAAAAACGCACAt  <  2:348868/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                    
CCCCATCGAATATCGATGTAAGCCGCCGGTCAGCCCAACCAGCCCACCGACGACCGGACCGCCGAGTAAGCCGCCCATTACCGCGCCTATCGCACGGGTATTGGCAATAGAATCGTCAATGTGCAACCCAAACCAGGTGCCCATGATGCAGAAGATGGAAAAGACGATGTAGCAGAGAAATTTATGCGGCAGACGAACCGTGACCTGCATTAACGGTATGAATAATGGCGTTTTACTCATTAACCATGCAATGACTAAAAAAACGCACAT  >  NC_000913/2214336‑2214605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A