Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	151	87.4	2971636	99.2%	2947862	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,251,238	G→A	A133A (GCG→GCA)	nfo →	endonuclease IV

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,251,238	0	G	A	100.0%	233.0 / NA	71	A133A (GCG→GCA)	nfo	endonuclease IV
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (32/39); total (32/39)

GCGATGCCTTTATAGATGAAATGCAGCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCGCTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGATTATCGACGGCGTGGAAGATAAATCCCGCGTCGGCGTCTGCAT  >  NC_000913/2251102‑2251372

gcgATGCCTTTATAGATGAAATGCAGCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTg                                                                                                                                     >  1:1061478/1‑140 (MQ=255)

  gATGCCTTTATAGATGAAATGCAGCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGa                                                                                                                                   <  2:1298074/140‑1 (MQ=255)

    tGCCTTTATAGATGAAATGCAGCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATa                                                                                                                                 <  1:953738/140‑1 (MQ=255)

         ttATAGATGAAATGCAGCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACt                                                                                                                            <  2:864820/140‑1 (MQ=255)

                 gAAATGCAGCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGgtgt                                                                                                                    >  1:419814/1‑140 (MQ=255)

                 gAAATGCAGCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGgtgt                                                                                                                    <  2:570593/140‑1 (MQ=255)

                 gAAATGCAGCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGgtgt                                                                                                                    >  1:657954/1‑140 (MQ=255)

                 gAAATGCAGCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGgtgt                                                                                                                    >  2:243243/1‑140 (MQ=255)

                  aaaTGCAGCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGtgtg                                                                                                                   >  1:616455/1‑140 (MQ=255)

                    aTGCAGCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGAc                                                                                                                 >  2:660270/1‑140 (MQ=255)

                    aTGCAGCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGAc                                                                                                                 <  2:616455/140‑1 (MQ=255)

                     tGCAGCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACa                                                                                                                >  1:515033/1‑140 (MQ=255)

                      gCAGCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAg                                                                                                               <  2:224196/140‑1 (MQ=255)

                      gCAGCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAg                                                                                                               <  1:937018/140‑1 (MQ=255)

                        aGCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCg                                                                                                             >  1:470227/1‑140 (MQ=255)

                         gCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCgg                                                                                                            <  1:660270/140‑1 (MQ=255)

                         gCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCgg                                                                                                            <  1:1260843/140‑1 (MQ=255)

                         gCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCgg                                                                                                            >  2:596157/1‑140 (MQ=255)

                          cGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCgg                                                                                                            <  2:921038/139‑1 (MQ=255)

                          cGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCgg                                                                                                            >  1:921038/1‑139 (MQ=255)

                          cGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGt                                                                                                           <  2:470227/140‑1 (MQ=255)

                               cGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAg                                                                                                      >  2:1074797/1‑140 (MQ=255)

                                 aaCAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGaa                                                                                                    <  1:1105973/140‑1 (MQ=255)

                                    aGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAac                                                                                                 >  1:308101/1‑140 (MQ=255)

                                    aGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAac                                                                                                 >  1:86009/1‑140 (MQ=255)

                                      cTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAg                                                                                                               >  1:849713/1‑124 (MQ=255)

                                      cTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAg                                                                                                               <  2:849713/124‑1 (MQ=255)

                                      cTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAacac                                                                                               >  1:602791/1‑140 (MQ=255)

                                        ggggCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACAccg                                                                                             <  2:67246/140‑1 (MQ=255)

                                        ggggCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACAccg                                                                                             <  1:801206/140‑1 (MQ=255)

                                        ggggCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACAccg                                                                                             <  1:421571/140‑1 (MQ=255)

                                        ggggCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACAccg                                                                                             <  1:1209442/140‑1 (MQ=255)

                                        ggggCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACAccg                                                                                             <  2:657954/140‑1 (MQ=255)

                                              ttctttGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTc                                                                                       >  2:231094/1‑140 (MQ=255)

                                              ttctttGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTc                                                                                       >  1:673891/1‑140 (MQ=255)

                                              ttctttGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTc                                                                                       <  1:411093/140‑1 (MQ=255)

                                                  ttGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAggg                                                                                   <  2:1061478/140‑1 (MQ=255)

                                                   tGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGc                                                                                  >  1:698181/1‑140 (MQ=255)

                                                    gCTCAACTTCCCCCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCa                                                                                 <  2:308101/140‑1 (MQ=255)

                                                    gCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCa                                                                                 <  2:86009/140‑1 (MQ=255)

                                                          cTTCCCCCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACt                                                                           <  2:419814/140‑1 (MQ=255)

                                                           ttCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACtt                                                                          <  2:673891/140‑1 (MQ=255)

                                                             ccACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAg                                                                        >  2:73834/1‑140 (MQ=255)

                                                                 ccTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGtt                                                                    <  1:231094/140‑1 (MQ=255)

                                                                 ccTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACGGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGtt                                                                    <  1:192206/140‑1 (MQ=255)

                                                                    ggCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTaa                                                                 >  1:479997/1‑140 (MQ=255)

                                                                    ggCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTaa                                                                 >  1:1110349/1‑140 (MQ=255)

                                                                          cATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGa                                                           >  1:1178831/1‑140 (MQ=255)

                                                                               gATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACAtc                                                      >  1:540677/1‑140 (MQ=255)

                                                                                  gCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTcg                                                   <  1:596157/140‑1 (MQ=255)

                                                                                     gATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCgcgg                                                >  1:1152715/1‑140 (MQ=255)

                                                                                     gATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCgcgg                                                <  2:698181/140‑1 (MQ=255)

                                                                                     gATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCgcgg                                                <  1:73834/140‑1 (MQ=255)

                                                                                     gATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCgcgg                                                <  2:1005347/140‑1 (MQ=255)

                                                                                      aTTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCgcggc                                               >  2:182221/1‑140 (MQ=255)

                                                                                       tttCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCgcggcg                                              >  1:900982/1‑140 (MQ=255)

                                                                                        ttCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGa                                             <  1:207014/140‑1 (MQ=255)

                                                                                               gagGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGATTATCGa                                      <  2:900982/140‑1 (MQ=255)

                                                                                                 ggATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGATTATCGACg                                    <  1:182221/140‑1 (MQ=255)

                                                                                                     tGCCTTGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGATTATCGACGGCGt                                >  1:960728/1‑140 (MQ=255)

                                                                                                          tGCGCGTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGATTATCGACGGCGTGGAAg                           >  1:136547/1‑140 (MQ=255)

                                                                                                            cgcgTATTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGATTATCGACGGCGTGGAAGAt                         >  2:706059/1‑140 (MQ=255)

                                                                                                                 aTTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGATTATCGACGGCGTGGAAGATAAATc                    <  1:1074797/140‑1 (MQ=255)

                                                                                                                 aTTGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGATTATCGACGGCGTGGAAGATAAATc                    >  1:975188/1‑140 (MQ=255)

                                                                                                                  ttGCCGAATCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGATTATCGACGGCGTGGAAGATAAATcc                   >  2:556806/1‑140 (MQ=255)

                                                                                                                          tCCATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGATTATCGACGGCGTGGAAGATAAATCCCGCGTCgg           >  1:348520/1‑140 (MQ=255)

                                                                                                                            cATCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGATTATCGACGGCGTGGAAGATAAATCCCGCGTCGGCg         <  2:602791/140‑1 (MQ=255)

                                                                                                                             aTCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGATTATCGACGGCGTGGAAGATAAATCCCGCGTCGGCGt        <  2:1110349/140‑1 (MQ=255)

                                                                                                                              tCAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGATTATCGACGGCGTGGAAGATAAATCCCGCGTCGGCGTc       <  2:540677/140‑1 (MQ=255)

                                                                                                                               cAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGATTATCGACGGCGTGGAAGATAAATCCCGCGTCGGCGTCt      <  2:136547/140‑1 (MQ=255)

                                                                                                                               cAACATTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGATTATCGACGGCGTGGAAGATAAATCCCGCGTCGGCGTCt      <  2:1152715/140‑1 (MQ=255)

                                                                                                                                   aTTGCACTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGATTATCGACGGCGTGGAAGATAAATCCCGCGTCGGCGTCTGCAt  <  1:549294/140‑1 (MQ=255)

GCGATGCCTTTATAGATGAAATGCAGCGTTGCGAACAGCTGGGGCTTTCTTTGCTCAACTTCCACCCTGGCAGCCATCTGATGCAGATTTCAGAAGAGGATTGCCTTGCGCGTATTGCCGAATCCATCAACATTGCGCTGGATAAAACTCAAGGTGTGACAGCGGTGATAGAAAACACCGCCGGTCAGGGCAGTAACTTAGGGTTTAAATTCGAACATCTCGCGGCGATTATCGACGGCGTGGAAGATAAATCCCGCGTCGGCGTCTGCAT  >  NC_000913/2251102‑2251372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A