Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,541,837 T→C T226A (ACG→GCG)  cysU ← sulfate/thiosulfate ABC transporter inner membrane subunit CysU

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,541,8370TC100.0% 234.2 / NA 66T226A (ACG→GCG) cysUsulfate/thiosulfate ABC transporter inner membrane subunit CysU
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (36/30);  total (36/30)

ACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGTCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGAAAGCTCCGGCAGCACCACTTTGCAGAAACTCTGCCA  >  NC_000913/2541700‑2541969
                                                                                                                                         |                                                                                                                                    
aCCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCt                                                                                                                                    >  2:103412/1‑140 (MQ=255)
aCCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCt                                                                                                                                    >  2:354373/1‑140 (MQ=255)
aCCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCt                                                                                                                                    >  1:165631/1‑140 (MQ=255)
aCCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCt                                                                                                                                    >  1:1104563/1‑140 (MQ=255)
aCCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAACAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCGTCAGCGACGTCACTTCCGCCt                                                                                                                                    >  2:1353763/1‑140 (MQ=255)
    aaGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCa                                                                                                                                <  1:1057525/140‑1 (MQ=255)
    aaGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCCCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCa                                                                                                                                <  2:1094431/140‑1 (MQ=255)
                  agTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCgg                                                                                                                  <  2:130301/140‑1 (MQ=255)
                    tgtTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCg                                                                                                                   >  1:1015811/1‑137 (MQ=255)
                    tgtTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCg                                                                                                                   <  2:1015811/137‑1 (MQ=255)
                    tgtTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCg                                                                                                                >  1:1429157/1‑140 (MQ=255)
                    tgtTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCg                                                                                                                >  2:719575/1‑140 (MQ=255)
                       tAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGATAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATa                                                                                                             >  1:1065256/1‑140 (MQ=255)
                            gagaACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAAt                                                                                                        >  2:1011373/1‑140 (MQ=255)
                             agaACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATc                                                                                                       >  1:1181094/1‑140 (MQ=255)
                              gaACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCa                                                                                                      >  1:782960/1‑140 (MQ=255)
                              gaACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCa                                                                                                      <  1:1222762/140‑1 (MQ=255)
                              gaACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCa                                                                                                      >  2:641630/1‑140 (MQ=255)
                              gaACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCa                                                                                                      >  1:585818/1‑140 (MQ=255)
                              gaACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCa                                                                                                      >  1:1450380/1‑140 (MQ=255)
                                aCAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCAcc                                                                                                    <  1:1196226/140‑1 (MQ=255)
                                aCAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCAcc                                                                                                    <  1:1233684/140‑1 (MQ=255)
                                  agcagcagcagAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACcgc                                                                                                  >  1:904655/1‑140 (MQ=255)
                                   gcagcagcagAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACcgcg                                                                                                 <  2:782960/140‑1 (MQ=255)
                                    cagcagcagAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCgcgc                                                                                                >  1:923522/1‑140 (MQ=255)
                                    cagcagcagAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCgcgc                                                                                                >  1:1370926/1‑140 (MQ=255)
                                          cagAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAAtt                                                                                          <  2:140623/140‑1 (MQ=255)
                                          cagAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAAtt                                                                                          <  2:110135/140‑1 (MQ=255)
                                           agagATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTc                                                                                         <  1:354373/140‑1 (MQ=255)
                                            gagaTGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCa                                                                                        <  2:1181094/140‑1 (MQ=255)
                                               aTGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCa                                                                                     >  1:918686/1‑140 (MQ=255)
                                                 gCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAg                                                                                   >  2:1393810/1‑140 (MQ=255)
                                                  ccGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACTAAGa                                                                                  >  2:57232/1‑140 (MQ=255)
                                                      gAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTAc                                                                              <  2:1450380/140‑1 (MQ=255)
                                                      gAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTAc                                                                              <  1:16979/140‑1 (MQ=255)
                                                      gAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCAGCGATAAAAATCACCGCGCCAAATTCACCAAGACTAc                                                                              <  1:457453/140‑1 (MQ=255)
                                                          aTCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGt                                                                          >  2:1139266/1‑140 (MQ=255)
                                                           tCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTa                                                                         <  1:1139266/140‑1 (MQ=255)
                                                                      aTCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAgcgc                                                              >  2:1113964/1‑140 (MQ=255)
                                                                      aTCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCAATATTCCCGGCGATAAAAATCCCCGCGCCAAATTCACCAAGACTACGGGTAAACGACAgcgc                                                              <  1:103412/140‑1 (MQ=255)
                                                                       tCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACa                                                                  <  1:1016746/135‑1 (MQ=255)
                                                                       tCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACa                                                                  >  2:1016746/1‑135 (MQ=255)
                                                                        cgcgCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCa                                                            <  2:49301/140‑1 (MQ=255)
                                                                         gcgcTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACC‑AGACTACGGGTAAACGACAGCGCCAcg                                                          <  2:1429157/140‑1 (MQ=255)
                                                                            ctcgctGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACTACAGCGCCAcgcc                                                        >  1:221419/1‑140 (MQ=255)
                                                                                 tGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGcca                                                   >  2:601994/1‑140 (MQ=255)
                                                                                       gTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAgcg                                             <  2:585818/140‑1 (MQ=255)
                                                                                             aaaCTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGgag                                       >  2:1251958/1‑140 (MQ=255)
                                                                                             aaaCTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGgag                                       >  1:293480/1‑140 (MQ=255)
                                                                                              aaCTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGgaga                                      <  1:1353763/140‑1 (MQ=255)
                                                                                                cTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGaaa                                    >  1:871200/1‑140 (MQ=255)
                                                                                                  ccTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGAAAGc                                  <  2:904655/140‑1 (MQ=255)
                                                                                                   cTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGAAAGCt                                 >  1:126574/1‑140 (MQ=255)
                                                                                                     gTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGAAAGCTcc                               <  2:923522/140‑1 (MQ=255)
                                                                                                     gTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGAAAGCTcc                               <  1:1099076/140‑1 (MQ=255)
                                                                                                      tAAGCGCACAAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGAAAGCTCCg                              >  1:345028/1‑140 (MQ=255)
                                                                                                            cacaAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGAAAGCTCCGgcagca                        <  2:1223724/140‑1 (MQ=255)
                                                                                                             acaAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGAAAGCTCCGGCAGcac                       >  2:733277/1‑140 (MQ=255)
                                                                                                             acaAAAATCATCAGCGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGAAAGCTCCGGCAGcac                       >  1:839727/1‑140 (MQ=255)
                                                                                                                           cGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGAAAGCTCCGgcagca                        <  2:254794/125‑1 (MQ=255)
                                                                                                                           cGACGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGAAAGCTCCGgcagca                        >  1:254794/1‑125 (MQ=255)
                                                                                                                             aCGTCCCTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGAAAGCTCCGGCAGcaccac                    <  2:213118/127‑1 (MQ=255)
                                                                                                                             aCGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGAAAGCTCCGGCAGcaccac                    >  1:213118/1‑127 (MQ=255)
                                                                                                                             aCGTCACTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGAAAGCTCCGGCAGCACCACTTTGCAGAAActc       >  1:470950/1‑140 (MQ=255)
                                                                                                                                  aCTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGAAAGCTCCGGCAGCACCACTTTGCAGAAACTCTGCCa  <  1:1125648/140‑1 (MQ=255)
                                                                                                                                  aCTTCCGCCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGAAAGCTCCGGCAGCACCACTTTGCAGAAACTCTGCCa  <  2:1065256/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                    
ACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGTCTTCCACGCGATATTTCCGGCGATAAAAATCACCGCGCCAAATTCACCAAGACTACGGGTAAACGACAGCGCCACGCCCGCCACCAGCGCCGGAGAAAGCTCCGGCAGCACCACTTTGCAGAAACTCTGCCA  >  NC_000913/2541700‑2541969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A