Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	151	87.4	2971636	99.2%	2947862	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,548,769	T→C	L223P (CTT→CCT)	yfeW →	penicillin binding protein 4B

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,548,769	0	T	C	100.0%	330.2 / NA	92	L223P (CTT→CCT)	yfeW	penicillin binding protein 4B
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (50/42); total (50/42)

TTCCCAGGATAAAGGCCAGACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCTTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCACGGAATTGAACGGCAATACCCGCGATGGCGTGATC  >  NC_000913/2548632‑2548905

ttCCCAGGATAAAGGCCAGACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTg                                                                                                                                        >  2:1365755/1‑140 (MQ=255)

  cccAGGATAAAGGCCAGACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGAc                                                                                                                                      >  1:480345/1‑140 (MQ=255)

  cccAGGATAAAGGCCAGACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGAc                                                                                                                                      <  2:305418/140‑1 (MQ=255)

    cAGGATAAAGGCCAGACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCg                                                                                                                                    >  1:741115/1‑140 (MQ=255)

      ggATAAAGGCCAGACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCt                                                                                                                                  <  2:1171513/140‑1 (MQ=255)

      ggATAAAGGCCAGACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCt                                                                                                                                  >  2:1203451/1‑140 (MQ=255)

        aTAAAGGCCAGACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCg                                                                                                                                    <  1:891470/136‑1 (MQ=255)

        aTAAAGGCCAGACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCg                                                                                                                                    >  2:891470/1‑136 (MQ=255)

        aTAAAGGCCAGACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTAt                                                                                                                                >  2:185460/1‑140 (MQ=255)

           aaGGCCAGACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGtt                                                                                                                             >  1:1146806/1‑140 (MQ=255)

            aGGCCAGACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTg                                                                                                                            >  1:300656/1‑140 (MQ=255)

            aGGCCAGACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTg                                                                                                                            >  1:1289456/1‑140 (MQ=255)

               ccAGACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAag                                                                                                                         <  1:1302502/140‑1 (MQ=255)

               ccAGACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAag                                                                                                                         <  1:1436475/140‑1 (MQ=255)

                 aGACGCTGGAGATGATCAAGCGCACGCCGCTGGAGTAGCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTGAGCCGCCTGACCGCTATGTTGAagag                                                                                                                       >  2:1316839/1‑140 (MQ=255)

                 aGACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAagag                                                                                                                       >  2:1172922/1‑140 (MQ=255)

                  gACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCt                                                                                                                                  <  2:28904/128‑1 (MQ=255)

                  gACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCt                                                                                                                                  >  1:28904/1‑128 (MQ=255)

                  gACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAag                                                                                                                         >  1:39244/1‑137 (MQ=255)

                  gACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAag                                                                                                                         <  2:39244/137‑1 (MQ=255)

                  gACGCTGGAGATGAT‑AAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTc                                                                                                                     >  2:1101181/1‑140 (MQ=255)

                            atgatCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCg                                                                                                            <  1:185460/140‑1 (MQ=255)

                               atCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGccc                                                                                                         >  1:444496/1‑140 (MQ=255)

                                 cAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGc                                                                                                       >  1:911019/1‑140 (MQ=255)

                                 cAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGc                                                                                                       >  2:557519/1‑140 (MQ=255)

                                 cAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGc                                                                                                       >  2:973511/1‑140 (MQ=255)

                                  aaGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCt                                                                                                      <  1:973511/140‑1 (MQ=255)

                                  aaGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCt                                                                                                      <  1:314945/140‑1 (MQ=255)

                                   aGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGccc                                                                                                     >  1:738857/1‑138 (MQ=255)

                                   aGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCt                                                                                                      >  2:282960/1‑139 (MQ=255)

                                   aGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCt                                                                                                      <  1:282960/139‑1 (MQ=255)

                                   aGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTc                                                                                                     >  1:1074114/1‑140 (MQ=255)

                                      gcACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGc                                                                                                  <  1:1365755/140‑1 (MQ=255)

                                       cACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGCTGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGGCGATTTATCGCCCGCTCGGcc                                                                                                 >  2:1300843/1‑140 (MQ=255)

                                        aCGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCt                                                                                                <  1:652606/140‑1 (MQ=255)

                                         cgccgcTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTg                                                                                               >  1:524295/1‑140 (MQ=255)

                                          gccgcTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGa                                                                                              >  2:728454/1‑140 (MQ=255)

                                          gccgcTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGa                                                                                              <  2:444496/140‑1 (MQ=255)

                                          gccgcTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGa                                                                                              >  1:1410121/1‑140 (MQ=255)

                                             gcTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGacac                                                                                           <  2:741115/140‑1 (MQ=255)

                                             gcTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGacac                                                                                           <  1:1203451/140‑1 (MQ=255)

                                             gcTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGacac                                                                                           <  2:1410121/140‑1 (MQ=255)

                                              cTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCg                                                                                                        <  1:1065877/126‑1 (MQ=255)

                                              cTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCg                                                                                                        >  2:1065877/1‑126 (MQ=255)

                                               tGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACAt                                                                                         <  1:1267679/140‑1 (MQ=255)

                                                ggAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATa                                                                                        <  2:300656/140‑1 (MQ=255)

                                                ggAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATa                                                                                        <  2:1254715/140‑1 (MQ=255)

                                                ggAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATa                                                                                        <  2:1074114/140‑1 (MQ=255)

                                                 gAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATAc                                                                                       <  1:815513/140‑1 (MQ=255)

                                                      tCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTAt                                                                                  >  1:877112/1‑140 (MQ=255)

                                                      tCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTAt                                                                                  >  2:686488/1‑140 (MQ=255)

                                                       cAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTAtt                                                                                 <  2:445263/140‑1 (MQ=255)

                                                           ccGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAAc                                                                             >  2:937776/1‑140 (MQ=255)

                                                            cGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAAcc                                                                            >  2:414158/1‑140 (MQ=255)

                                                               cagcaAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATATGGTATTTAACCCgc                                                                         >  2:1224899/1‑140 (MQ=255)

                                                               cagcaAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCgc                                                                         <  1:728454/140‑1 (MQ=255)

                                                                         atCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAgg                                                               >  1:334905/1‑140 (MQ=255)

                                                                                 cGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAAc                                                       >  1:1158338/1‑140 (MQ=255)

                                                                                 cGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAAc                                                       <  2:911019/140‑1 (MQ=255)

                                                                                 cGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAAc                                                       <  1:1172922/140‑1 (MQ=255)

                                                                                   aTGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGaa                                                                  <  2:336813/127‑1 (MQ=255)

                                                                                   aTGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGaa                                                                  >  1:336813/1‑127 (MQ=255)

                                                                                    tGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGc                                                    >  1:1412801/1‑140 (MQ=255)

                                                                                    tGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGc                                                    >  2:178947/1‑140 (MQ=255)

                                                                                             tatGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTg                                           >  1:1433388/1‑140 (MQ=255)

                                                                                                gctgctTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTgccg                                        >  2:760722/1‑140 (MQ=255)

                                                                                                   gctTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCa                                     <  2:877112/140‑1 (MQ=255)

                                                                                                    ctTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTgccg                                        >  1:670369/1‑136 (MQ=255)

                                                                                                    ctTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTgccg                                        <  2:670369/136‑1 (MQ=255)

                                                                                                    ctTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCa                                     <  1:195240/139‑1 (MQ=255)

                                                                                                    ctTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCa                                     >  2:195240/1‑139 (MQ=255)

                                                                                                    ctTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCAc                                    >  1:457467/1‑140 (MQ=255)

                                                                                                    ctTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCAc                                    >  1:147251/1‑140 (MQ=255)

                                                                                                    ctTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCAc                                    >  1:336080/1‑140 (MQ=255)

                                                                                                    ctTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCAc                                    >  2:1163896/1‑140 (MQ=255)

                                                                                                    ctTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCAc                                    >  1:630566/1‑140 (MQ=255)

                                                                                                       ggATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCACg                                   >  2:146647/1‑138 (MQ=255)

                                                                                                       ggATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCACg                                   <  1:146647/138‑1 (MQ=255)

                                                                                                        gATTTATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCACGGaa                                <  1:686488/140‑1 (MQ=255)

                                                                                                           ttATCGTCGAGTCGGTTACCGGTCAGCCGGCTGACCGCTTTGTTGAAGAGTCGATTTATCGCCCGCTCGGCCAGACACATGCGCTATTTAACCCACTGCGGCAAGGCTTTAAACCGCAACAAATTGCCGCCACGGAATTg                             <  2:480345/140‑1 (MQ=255)

                                                                                                            tATCGTCGAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACTGCAACAAATTGCCGCCACGGAATTGa                            <  1:1316839/140‑1 (MQ=255)

                                                                                                              tcgtcgAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTgccg                                        >  1:233367/1‑126 (MQ=255)

                                                                                                              tcgtcgAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTgccg                                        <  2:233367/126‑1 (MQ=255)

                                                                                                              tcgtcgAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCa                                     <  2:651285/129‑1 (MQ=255)

                                                                                                              tcgtcgAGTCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCa                                     >  1:651285/1‑129 (MQ=255)

                                                                                                                      tCGGTTACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCACGGAATTGAACGGCAATAc                  <  2:738857/140‑1 (MQ=255)

                                                                                                                           tACCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCACGGAATTGAACGGCAATACCcgcg             <  1:1101181/140‑1 (MQ=255)

                                                                                                                            aCCGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCACGGAATTGAACGGCAATACCCGCGa            >  2:741288/1‑140 (MQ=255)

                                                                                                                              cGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCACGGAATTGAACGGCAATACCCGCGa            >  1:1440396/1‑138 (MQ=255)

                                                                                                                              cGGTCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCACGGAATTGAACGGCAATACCCGCGa            <  2:1440396/138‑1 (MQ=255)

                                                                                                                                 tCAGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATATGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCACGGAATTGAACGGCAATACCCGCGATGGCg       <  1:1224899/140‑1 (MQ=255)

                                                                                                                                   aGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCACGGAATTGAACGGCAATACCcgcg             >  1:435246/1‑132 (MQ=255)

                                                                                                                                   aGCCGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCACGGAATTGAACGGCAATACCcgcg             <  2:435246/132‑1 (MQ=255)

                                                                                                                                    gccgccTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCACGGAATTGAACGGCAATACCCGCGATGGCGTGa    >  1:1178068/1‑140 (MQ=255)

                                                                                                                                    gccgccTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCACGGAATTGAACGGCAATACCCGCGATGGCGTGa    >  1:148905/1‑140 (MQ=255)

                                                                                                                                      cGCCTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCACGGAATTGAACGGCAATACCCGCGATGGCGTGATc  <  1:1313810/140‑1 (MQ=255)

TTCCCAGGATAAAGGCCAGACGCTGGAGATGATCAAGCGCACGCCGCTGGAATATCAGCCCGGCAGCAAACATATCTACAGCGATGTCGATTATATGCTGCTTGGATTTATCGTCGAGTCGGTTACCGGTCAGCCGCTTGACCGCTATGTTGAAGAGTCGATTTATCGCCCGCTCGGCCTGACACATACGGTATTTAACCCGCTGCTGAAAGGCTTTAAACCGCAACAAATTGCCGCCACGGAATTGAACGGCAATACCCGCGATGGCGTGATC  >  NC_000913/2548632‑2548905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A