Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,789,477 T→C Y165H (TAT→CAT)  csiD → PF08943 family protein CsiD

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,789,4770TC100.0% 309.8 / NA 86Y165H (TAT→CAT) csiDPF08943 family protein CsiD
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (45/41);  total (45/41)

CTGATTGGCCGTTCCAATTTCGATGCGATGAGCGGTCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGTATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTATTTCCGCCACCCGCTGGCGCGTCG  >  NC_000913/2789345‑2789613
                                                                                                                                    |                                                                                                                                        
ttGATTGGCCGTTCCAATTTCGATGCGATGAGCGGTCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGa                                                                                                                                   <  1:931224/139‑1 (MQ=255)
cTGATTGGCCGTTCCAATTTCGATGCGATGAGCGGTCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGa                                                                                                                                   <  2:681568/140‑1 (MQ=255)
  gATTGGCCGTTCCAATTTCGATGCGATGAGCGGTCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAag                                                                                                                                 <  2:1165705/140‑1 (MQ=255)
  gATTGGCCGTTCCAATTTCGATGCGATGAGCGGTCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAag                                                                                                                                 <  1:1255471/140‑1 (MQ=255)
     tGGCCGTTCCAATTTCGATGCGATGAGCGGTCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAgaga                                                                                                                              <  1:804947/140‑1 (MQ=255)
      ggCCGTTCCAATTTCGATGCGATGAGCGGTCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGAt                                                                                                                             <  2:813708/140‑1 (MQ=255)
         cGTTCCAATTTCGATGCGATGAGCGGTCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAAc                                                                                                                          <  1:1264551/140‑1 (MQ=255)
           ttCCAATTTCGATGCGATGAGCGGTCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCg                                                                                                                        >  1:639293/1‑140 (MQ=255)
             ccAATTTCGATGCGATGAGCGGTCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGAt                                                                                                                      >  2:1451860/1‑140 (MQ=255)
              cAATTTCGATGCGATGAGCGGTCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGAtt                                                                                                                     <  2:491731/140‑1 (MQ=255)
                   tCGATGCGATGAGCGGTCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTg                                                                                                                <  1:593298/140‑1 (MQ=255)
                   tCGATGCGATGAGCGGTCAGTATTACGCGCGTTTTCTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTg                                                                                                                <  2:1027461/140‑1 (MQ=255)
                      atgcgatgAGCGGTCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCtg                                                                                                             <  1:1451860/140‑1 (MQ=255)
                      atgcgatgAGCGGTCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCtg                                                                                                             >  2:840085/1‑140 (MQ=255)
                       tgcgatgAGCGGTCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCtga                                                                                                            >  2:757912/1‑140 (MQ=255)
                                   tCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATcg                                                                                                >  1:423159/1‑140 (MQ=255)
                                   tCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATcg                                                                                                >  1:213723/1‑140 (MQ=255)
                                   tCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATcg                                                                                                >  2:441699/1‑140 (MQ=255)
                                    cAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATcga                                                                                               <  2:1293333/140‑1 (MQ=255)
                                        aTTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAg                                                                                           <  1:757912/140‑1 (MQ=255)
                                         ttACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGc                                                                                          <  1:479420/140‑1 (MQ=255)
                                             gcgcgTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCaaaa                                                                                      >  1:1320877/1‑140 (MQ=255)
                                               gcgTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATcga                                                                                               >  1:507431/1‑129 (MQ=255)
                                               gcgTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATcga                                                                                               <  2:507431/129‑1 (MQ=255)
                                                 gTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCaaa                                                                                       >  1:1318268/1‑135 (MQ=255)
                                                 gTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATg                                                                                  >  2:35783/1‑140 (MQ=255)
                                                 gTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATg                                                                                  >  2:1216614/1‑140 (MQ=255)
                                                 gTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATg                                                                                  >  1:762331/1‑140 (MQ=255)
                                                 gTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATg                                                                                  >  1:1322809/1‑140 (MQ=255)
                                                 gTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATg                                                                                  >  1:869671/1‑140 (MQ=255)
                                                 gTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACACATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATg                                                                                  >  2:896462/1‑140 (MQ=255)
                                                 attttGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCaaa                                                                                       <  2:1318268/134‑1 (MQ=255)
                                                   tttGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCa                                                                                <  2:230314/140‑1 (MQ=255)
                                                    ttGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAg                                                                               <  2:282599/140‑1 (MQ=255)
                                                       tAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGc                                                                            <  2:1320877/140‑1 (MQ=255)
                                                           gAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATg                                                                                  >  2:1177353/1‑130 (MQ=255)
                                                           gAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATg                                                                                  <  1:1177353/130‑1 (MQ=255)
                                                              aaaTGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACACATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAAtt                                                                     <  1:896462/140‑1 (MQ=255)
                                                                 tGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCgc                                                                  <  1:1216614/140‑1 (MQ=255)
                                                                 tGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCgc                                                                  <  1:1210080/140‑1 (MQ=255)
                                                                      aTAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCgctgctg                                                             <  2:1370024/140‑1 (MQ=255)
                                                                      aTAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCgctg                                                                <  1:455427/137‑1 (MQ=255)
                                                                      aTAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCgctg                                                                >  2:455427/1‑137 (MQ=255)
                                                                        aaCTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCgctgctgct                                                           <  1:16095/140‑1 (MQ=255)
                                                                        aaCTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCgctgctgct                                                           <  1:383771/140‑1 (MQ=255)
                                                                           tCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCa                                                        <  2:1322809/140‑1 (MQ=255)
                                                                                 aGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGa                                                  <  2:1122230/140‑1 (MQ=255)
                                                                                   cTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATg                                                <  2:423159/140‑1 (MQ=255)
                                                                                   cTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATg                                                >  1:564119/1‑140 (MQ=255)
                                                                                    tATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGa                                               <  2:639293/140‑1 (MQ=255)
                                                                                     aTCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGAc                                              >  2:421991/1‑140 (MQ=255)
                                                                                      tCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACt                                             <  2:213723/140‑1 (MQ=255)
                                                                                       cTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCAtctc                                                    <  1:1006180/132‑1 (MQ=255)
                                                                                       cTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCAtctc                                                    >  2:1006180/1‑132 (MQ=255)
                                                                                       cTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTg                                            >  1:291082/1‑140 (MQ=255)
                                                                                         gcgcCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTggg                                          <  1:280928/140‑1 (MQ=255)
                                                                                           gcCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGAt                                                 <  2:289817/131‑1 (MQ=255)
                                                                                           gcCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGAt                                                 >  1:289817/1‑131 (MQ=255)
                                                                                           gcCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGaa                                        >  2:697292/1‑140 (MQ=255)
                                                                                           gcCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGaa                                        >  2:576303/1‑140 (MQ=255)
                                                                                            ccAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAAc                                       <  2:564119/140‑1 (MQ=255)
                                                                                             cAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACa                                      >  1:1423257/1‑140 (MQ=255)
                                                                                             cAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACa                                      >  2:421251/1‑140 (MQ=255)
                                                                                              aGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGACCAt                                     <  2:291082/140‑1 (MQ=255)
                                                                                               gCCGCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACAtc                                    >  1:201349/1‑140 (MQ=255)
                                                                                                  gCACCGCGTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCg                                 <  2:392786/140‑1 (MQ=255)
                                                                                                       gcgTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACTGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACAtct                                   >  1:497079/1‑133 (MQ=255)
                                                                                                       gcgTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACTGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACAtct                                   <  2:497079/133‑1 (MQ=255)
                                                                                                       gcgTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAAc                            >  2:1042030/1‑140 (MQ=255)
                                                                                                         gTGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTa                          >  1:826259/1‑140 (MQ=255)
                                                                                                          tGATGGAGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTAt                         >  2:461292/1‑140 (MQ=255)
                                                                                                                aGCTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTATTTCCGc                   >  1:993524/1‑140 (MQ=255)
                                                                                                                  cTACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTATTTCCGCCa                 >  1:549930/1‑140 (MQ=255)
                                                                                                                   tACACAACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTATTTCCGCCAc                <  2:201349/140‑1 (MQ=255)
                                                                                                                      acaACGACGGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTATTTCCGCCACCCg             >  2:1382313/1‑140 (MQ=255)
                                                                                                                          cgacgGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTATTTCCGCCACCCGCTgg         >  2:904688/1‑140 (MQ=255)
                                                                                                                          cgacgGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTATTTCCGCCACCCGCTgg         >  2:263318/1‑140 (MQ=255)
                                                                                                                          cgacgGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTATTTCCGCCACCCGCTgg         >  2:1174741/1‑140 (MQ=255)
                                                                                                                          cgacgGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTATTTCCGCCACCCGCTgg         >  1:733936/1‑140 (MQ=255)
                                                                                                                          cgacgGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTATTTCCGCCACCCGCTgg         >  1:1178686/1‑140 (MQ=255)
                                                                                                                            acgGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTATTTCCGCCACCCGCTGgcg       >  1:22758/1‑140 (MQ=255)
                                                                                                                             cgGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTATTTCCGCCACCCGCTGgcgc      >  2:302999/1‑140 (MQ=255)
                                                                                                                             cgGCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTATTTCCGCCACCCGCTGgcgc      >  1:31782/1‑140 (MQ=255)
                                                                                                                               gCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTATTTCCGCCACCCGCTGGCGCGt    >  1:657700/1‑140 (MQ=255)
                                                                                                                               gCACGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTATTTCCGCCACCCGCTGGCGCGt    >  1:1126857/1‑140 (MQ=255)
                                                                                                                                 aCGCATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTATTTCCGCCAACCGCTGGCGCGTCg  <  2:869671/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                        
CTGATTGGCCGTTCCAATTTCGATGCGATGAGCGGTCAGTATTACGCGCGTTTTGTAGTGAAAAATGTCGATAACTCAGACAGCTATCTGCGCCAGCCGCACCGCGTGATGGAGCTACACAACGACGGCACGTATGTCGAAGAGATAACCGATTACGTGCTGATGATGAAAATCGACGAGCAAAACATGCAGGGCGGAAATTCGCTGCTGCTGCATCTCGATGACTGGGAACATCTCGACAACTATTTCCGCCACCCGCTGGCGCGTCG  >  NC_000913/2789345‑2789613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A