Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,848,580 G→A A221V (GCA→GTA)  hycC ← formate hydrogenlyase subunit HycC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,848,5800GA100.0% 225.9 / NA 66A221V (GCA→GTA) hycCformate hydrogenlyase subunit HycC
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (30/36);  total (30/36)

AGCACCAGCAGCGCGATCCCCCACCACAGCGGTGCATTACCGCCCAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTGCCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCATATCCAGCAGGCGCAGATCCAGCGTG  >  NC_000913/2848445‑2848711
                                                                                                                                       |                                                                                                                                   
aGCACCAGCAGCGCGATCCCCCACCACAGCGGTGCATTACCGCCCAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTg                                                                                                                                 <  1:996313/140‑1 (MQ=255)
        cagcGCGATCCCCCACCACAGCGGTGCATTACCGCCCAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCAccc                                                                                                                         <  2:1225905/140‑1 (MQ=255)
          gcgcGATCCCCCACCACAGCGGTGCATTACCGCCCAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGCTCGCATGTACCTGCGGCACCCAg                                                                                                                       >  2:241493/1‑140 (MQ=255)
               aTCCCCCACCACAGCGGTGCATTACCGCCCAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTg                                                                                                                  <  1:972891/140‑1 (MQ=255)
                  ccccACCACAGCGGTGCATTACCGCCCAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAg                                                                                                               <  1:1012578/140‑1 (MQ=255)
                             cGGTGCATTACCGCCCAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATcc                                                                                                    >  1:115443/1‑140 (MQ=255)
                             cGGTGCATTACCGCCCAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATcc                                                                                                    >  2:675255/1‑140 (MQ=255)
                               gTGCATTACCGCCCAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAg                                                                                                               <  1:877567/127‑1 (MQ=255)
                               gTGCATTACCGCCCAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAg                                                                                                               >  2:877567/1‑127 (MQ=255)
                               gTGCATTACCGCCCAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCg                                                                                                  <  1:96493/140‑1 (MQ=255)
                                tGCATTACCGCCCAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCgg                                                                                                 >  1:41077/1‑140 (MQ=255)
                                  cATTACCGCCCAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGcc                                                                                               >  1:313925/1‑140 (MQ=255)
                                    ttACCGCCCAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCcag                                                                                             <  2:41077/140‑1 (MQ=255)
                                    ttACCGCCCAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCcag                                                                                             <  1:675255/140‑1 (MQ=255)
                                       ccGCCCAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCcagcag                                                                                          >  1:88173/1‑140 (MQ=255)
                                          cccAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGcc                                                                                       >  2:410428/1‑140 (MQ=255)
                                          cccAGCAGTGACAGGGGTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGcc                                                                                       >  2:238307/1‑140 (MQ=255)
                                           ccAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCa                                                                                      <  1:751946/140‑1 (MQ=255)
                                            cagcagTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCaa                                                                                     >  1:463324/1‑140 (MQ=255)
                                                    aCAGGTTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATc                                                                             >  2:1443801/1‑140 (MQ=255)
                                                       gggTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACt                                                                          >  1:1191603/1‑140 (MQ=255)
                                                        ggTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTc                                                                         >  2:390861/1‑140 (MQ=255)
                                                         gTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCa                                                                                      <  2:694663/126‑1 (MQ=255)
                                                         gTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCa                                                                                      >  1:694663/1‑126 (MQ=255)
                                                         gTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCAGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTcc                                                                        >  1:543847/1‑140 (MQ=255)
                                                           tAAAATGCCCAGCAGGCCAATTTTCATGACTACAGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGa                                                                      <  1:189464/140‑1 (MQ=255)
                                                            aaaaTGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGag                                                                     <  1:1338049/140‑1 (MQ=255)
                                                              aaTGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGagca                                                                   >  2:66387/1‑140 (MQ=255)
                                                               aTGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGagcag                                                                  <  2:111781/140‑1 (MQ=255)
                                                                  cccAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCa                                                               >  2:41073/1‑140 (MQ=255)
                                                                  cccAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCa                                                               <  2:483945/140‑1 (MQ=255)
                                                                  cccAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCCCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCa                                                               <  1:1443801/140‑1 (MQ=255)
                                                                       cagGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGatat                                                          >  1:1159911/1‑140 (MQ=255)
                                                                             aaTTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAAc                                                    <  1:1364522/140‑1 (MQ=255)
                                                                                    aTGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCgg                                             <  1:371184/140‑1 (MQ=255)
                                                                                    aTGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCgg                                             <  2:397020/140‑1 (MQ=255)
                                                                                           ccGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGt                                      <  2:543847/140‑1 (MQ=255)
                                                                                              tAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGc                                   >  2:1410278/1‑140 (MQ=255)
                                                                                               aGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCACAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCa                                  <  2:985743/140‑1 (MQ=255)
                                                                                               aGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCa                                  <  2:88173/140‑1 (MQ=255)
                                                                                               aGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCa                                  <  2:1191603/140‑1 (MQ=255)
                                                                                                   aacaacGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACg                              >  1:623163/1‑140 (MQ=255)
                                                                                                   aacaacGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACg                              >  2:602957/1‑140 (MQ=255)
                                                                                                   aacaacGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACg                              <  1:390861/140‑1 (MQ=255)
                                                                                                     caacGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTg                                       >  1:776132/1‑129 (MQ=255)
                                                                                                     caacGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTg                                       <  2:527842/129‑1 (MQ=255)
                                                                                                     caacGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTg                                       <  2:776132/129‑1 (MQ=255)
                                                                                                     caacGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTg                                       <  1:391538/129‑1 (MQ=255)
                                                                                                     caacGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTg                                       >  1:527842/1‑129 (MQ=255)
                                                                                                     caacGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTg                                       >  2:391538/1‑129 (MQ=255)
                                                                                                     caacGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCa                            >  1:615696/1‑140 (MQ=255)
                                                                                                      aacGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACg                              <  1:103514/137‑1 (MQ=255)
                                                                                                      aacGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACg                              >  2:103514/1‑137 (MQ=255)
                                                                                                      aacGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCat                           >  1:752879/1‑140 (MQ=255)
                                                                                                      aacGCGGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCat                           <  1:238307/140‑1 (MQ=255)
                                                                                                        cgcgGCAGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCatat                         >  1:999426/1‑140 (MQ=255)
                                                                                                              aGCTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCATATCcagca                   <  2:115443/140‑1 (MQ=255)
                                                                                                                cTGGCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCATATCCAGCAgg                 <  2:1159911/140‑1 (MQ=255)
                                                                                                                  ggCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCATATCCAGCAGgcg               <  2:1099844/140‑1 (MQ=255)
                                                                                                                  ggCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCATATCCAGCAGgcg               >  2:1082601/1‑140 (MQ=255)
                                                                                                                  ggCGCAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCATATCCAGCAGgcg               <  1:635096/140‑1 (MQ=255)
                                                                                                                     gcAGAGGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCATATCCAGCAGGCGCAg            >  2:624012/1‑140 (MQ=255)
                                                                                                                       agagGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCATATCcagca                   >  1:197463/1‑131 (MQ=255)
                                                                                                                       agagGCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCATATCcagca                   <  2:197463/131‑1 (MQ=255)
                                                                                                                          ggCGTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCATATCCAGCAGGCGCAGATCCa       <  2:615696/140‑1 (MQ=255)
                                                                                                                             gTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCATATCCAGCAGGCGCAg            >  2:61831/1‑132 (MQ=255)
                                                                                                                             gTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCATATCCAGCAGGCGCAg            <  1:61831/132‑1 (MQ=255)
                                                                                                                             gTTCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCATATCCAGCAGGCGCAGATCCAGCg    <  1:1082601/140‑1 (MQ=255)
                                                                                                                               tCGCATGTACCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCATATCCAGCAGGCGCAGATCCAGCGTg  >  2:45658/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                   
AGCACCAGCAGCGCGATCCCCCACCACAGCGGTGCATTACCGCCCAGCAGTGACAGGGTTAAAATGCCCAGCAGGCCAATTTTCATGACTACCGTAGAAAACAACGCGGCAGCTGGCGCAGAGGCGTTCGCATGTGCCTGCGGCACCCAGCCGTGCAGCGGAATAATCCCGGCCAGCAGGCCAAAGCCAATCACTCCGAGCAGCCAGATATCGGAACCGAGCGGCAGCTGTTGCATACGCATATCCAGCAGGCGCAGATCCAGCGTG  >  NC_000913/2848445‑2848711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A