Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	151	87.4	2971636	99.2%	2947862	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,957,414	(T)_6→5	coding (1471/2889 nt)	ptrA ←	protease 3

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,957,409	0	T	.	100.0%	417.9 / NA	99	coding (1476/2889 nt)	ptrA	protease 3
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (57/42); total (57/42)

Only 100 of 104 total aligned reads displayed.

TGGCGCATACACCACGCGCAGATTCGACTCATCAACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATACGCGCATTCTGCGGCGTCATCA  >  NC_000913/2957271‑2957542

tGGCGCATACACCACGCGCAGATTCGACTCATCAACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCtt                                                                                                                                      >  1:784216/1‑140 (MQ=255)

 ggCGCATACACCACGCGCAGATTCGACTCATCAACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCttt                                                                                                                                     >  1:1377547/1‑140 (MQ=255)

     cATACACCACGCGCAGATTCGACTCATCAACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCtttttct                                                                                                                                 >  1:1094747/1‑138 (MQ=255)

            cacGCGCAGATTCGACTCATCAACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTc                                                                                                                         >  1:1144774/1‑140 (MQ=255)

            cacGCGCAGATTCGACTCATCAACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTc                                                                                                                         >  1:1171236/1‑140 (MQ=255)

                cgcAGATTCGACTCATCAACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCg                                                                                                                     >  1:1462694/1‑140 (MQ=255)

                 gcAGATTCGACTCATCAACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGa                                                                                                                    >  1:1435317/1‑140 (MQ=255)

                  cAGATTCGACTCATCAACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGaa                                                                                                                   <  2:1462694/140‑1 (MQ=255)

                  cAGATTCGACTCATCAACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGaa                                                                                                                   <  1:1298355/140‑1 (MQ=255)

                    gATTCGACTCATCAACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCg                                                                                                                        >  2:1456778/1‑133 (MQ=255)

                    gATTCGACTCATCAACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCg                                                                                                                        <  1:1456778/133‑1 (MQ=255)

                        cGACTCATCAACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTtg                                                                                                             <  2:791663/140‑1 (MQ=255)

                           cTCATCAACACTCATCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTgc                                                                                                          <  2:1289906/140‑1 (MQ=255)

                               tcaACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAGTCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTg                                                                                                      >  1:1305946/1‑140 (MQ=255)

                               tcaACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCGATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTg                                                                                                      >  2:139582/1‑140 (MQ=255)

                               tcaACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTg                                                                                                      >  2:615163/1‑140 (MQ=255)

                               tcaACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTg                                                                                                      >  1:264687/1‑140 (MQ=255)

                                caacaaTCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAGTCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGa                                                                                                     <  2:1305946/140‑1 (MQ=255)

                                     aTCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTa                                                                                                <  2:434156/140‑1 (MQ=255)

                                     aTCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTa                                                                                                <  2:1094747/140‑1 (MQ=255)

                                      tCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTAt                                                                                               <  2:1377547/140‑1 (MQ=255)

                                      tCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTAt                                                                                               <  2:1144774/140‑1 (MQ=255)

                                        aGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCg                                                                                             >  1:960824/1‑140 (MQ=255)

                                          ctctGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGAc                                                                                           >  2:1016953/1‑140 (MQ=255)

                                                  ggTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCACTGATTTTATCGACCTGATACg                                                                                   >  2:574564/1‑140 (MQ=255)

                                                    tCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGgc                                                                                 >  2:1419301/1‑140 (MQ=255)

                                                    tCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGgc                                                                                 >  1:208642/1‑140 (MQ=255)

                                                       tATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTAt                                                                                               >  2:1366254/1‑123 (MQ=255)

                                                       tATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTAt                                                                                               <  1:1366254/123‑1 (MQ=255)

                                                              tctcTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATAc                                                                                    <  2:415374/127‑1 (MQ=255)

                                                              tctcTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATAc                                                                                    >  1:415374/1‑127 (MQ=255)

                                                              tctcTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACgg                                                                                  <  1:447533/129‑1 (MQ=255)

                                                              tctcTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACgg                                                                                  >  2:447533/1‑129 (MQ=255)

                                                              tctcTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACaa                                                                       >  1:1186197/1‑140 (MQ=255)

                                                               ctctGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACaaa                                                                      >  1:374141/1‑140 (MQ=255)

                                                                 ctGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGt                                                                    <  2:374141/140‑1 (MQ=255)

                                                                  tGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTa                                                                   >  1:1285528/1‑140 (MQ=255)

                                                                  tGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTa                                                                   >  2:56466/1‑140 (MQ=255)

                                                                       tAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCg                                                              >  1:512461/1‑140 (MQ=255)

                                                                       tAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCg                                                              <  1:1016953/140‑1 (MQ=255)

                                                                         aTCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGtt                                                            >  1:368642/1‑140 (MQ=255)

                                                                         aTCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGtt                                                            >  1:610134/1‑140 (MQ=255)

                                                                         aTCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGtt                                                            >  1:71326/1‑140 (MQ=255)

                                                                              cGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTttgtt                                                       >  2:1241136/1‑140 (MQ=255)

                                                                              cGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTttgtt                                                       >  2:1471688/1‑140 (MQ=255)

                                                                              cGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTttgtt                                                       >  1:213187/1‑140 (MQ=255)

                                                                                agaAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTtgttgt                                                     >  2:1179140/1‑140 (MQ=255)

                                                                                    atcatcAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCgg                                                 >  1:718471/1‑140 (MQ=255)

                                                                                    atcatcAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCgg                                                 <  1:949857/140‑1 (MQ=255)

                                                                                    atcatcAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCgg                                                 <  2:512461/140‑1 (MQ=255)

                                                                                       atcaGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGctc                                              >  1:280159/1‑140 (MQ=255)

                                                                                        tcaGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGctct                                             >  2:1119159/1‑140 (MQ=255)

                                                                                          aGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCttt                                           <  1:619345/140‑1 (MQ=255)

                                                                                            gAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCg                                         <  2:718471/140‑1 (MQ=255)

                                                                                             aaTATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCgg                                        <  1:1471688/140‑1 (MQ=255)

                                                                                             aaTATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCgg                                        <  2:280159/140‑1 (MQ=255)

                                                                                             aaTATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCgg                                        <  2:138327/140‑1 (MQ=255)

                                                                                             aaTATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCgg                                        <  2:1285528/140‑1 (MQ=255)

                                                                                               tataAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGTCAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGc                                      <  2:962116/140‑1 (MQ=255)

                                                                                               tataAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCgg                                        <  1:1329640/138‑1 (MQ=255)

                                                                                               tataAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCgg                                        >  2:1329640/1‑138 (MQ=255)

                                                                                                 taAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTtgtg                                                    <  2:1277800/124‑1 (MQ=255)

                                                                                                 taAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTtgtg                                                    >  1:1277800/1‑124 (MQ=255)

                                                                                                 taAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTg                                    <  2:1435317/140‑1 (MQ=255)

                                                                                                  aaGGGTTAAGCTCTGGCAAAGAGAGCGCGATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGa                                   <  1:139582/140‑1 (MQ=255)

                                                                                                  aaGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGa                                   <  1:1119159/140‑1 (MQ=255)

                                                                                                  aaGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGa                                   <  2:1171236/140‑1 (MQ=255)

                                                                                                  aaGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGa                                   <  1:56466/140‑1 (MQ=255)

                                                                                                    gggTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGata                                 >  2:475478/1‑140 (MQ=255)

                                                                                                      gTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCgg                                        <  2:245629/131‑1 (MQ=255)

                                                                                                      gTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGa                                   >  2:659723/1‑136 (MQ=255)

                                                                                                      gTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGa                                   <  1:659723/136‑1 (MQ=255)

                                                                                                      gTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGAtata                               <  2:368642/140‑1 (MQ=255)

                                                                                                      gTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGAtata                               <  2:610134/140‑1 (MQ=255)

                                                                                                      gTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGAtata                               >  1:1409754/1‑140 (MQ=255)

                                                                                                       ttAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATAc                              >  1:310745/1‑140 (MQ=255)

                                                                                                       ttAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCACTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATAc                              <  1:574564/140‑1 (MQ=255)

                                                                                                         aaGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCa                            >  1:1428481/1‑140 (MQ=255)

                                                                                                         aaGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCa                            >  1:100450/1‑140 (MQ=255)

                                                                                                         aaGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCa                            >  1:312107/1‑140 (MQ=255)

                                                                                                          aGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGa                                   >  1:1096985/1‑132 (MQ=255)

                                                                                                          aGCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGa                                   <  2:1096985/132‑1 (MQ=255)

                                                                                                           gCTCTGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGa                          <  2:71326/140‑1 (MQ=255)

                                                                                                             tctGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATa                        <  2:264687/140‑1 (MQ=255)

                                                                                                               tGGCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATAcg                      >  2:1441811/1‑140 (MQ=255)

                                                                                                                ggCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATAcgc                     >  1:614209/1‑140 (MQ=255)

                                                                                                                ggCAAAGAGAGCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAAATAcgc                     >  2:1477214/1‑140 (MQ=255)

                                                                                                                         agCGCAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATACGCGCATTCTgc            >  2:275692/1‑140 (MQ=255)

                                                                                                                           cgcAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATACGCGCATTCTgcgg          >  2:923901/1‑140 (MQ=255)

                                                                                                                           cgcAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATACGCGCATTCTgcgg          >  2:1274624/1‑140 (MQ=255)

                                                                                                                           cgcAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATACGCGCATTCTgcgg          >  2:315018/1‑140 (MQ=255)

                                                                                                                           cgcAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATACGCGCATTCTgcgg          >  1:83865/1‑140 (MQ=255)

                                                                                                                           cgcAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATACGCGCATTCTgcgg          >  1:850785/1‑140 (MQ=255)

                                                                                                                           cgcAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATACGCGCATTCTgcgg          >  1:944508/1‑140 (MQ=255)

                                                                                                                           cgcAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTC‑TTCGGGCTGATATACCAGATACGCGCATTCTgcggc         >  1:1008712/1‑140 (MQ=255)

                                                                                                                            gcAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATACGCGCATTCTgcggc         <  2:850785/140‑1 (MQ=255)

                                                                                                                             cAATGTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATACGCGCATTCTgcggcg        <  2:1186197/140‑1 (MQ=255)

                                                                                                                                 gTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATAcgc                     >  2:550436/1‑123 (MQ=255)

                                                                                                                                 gTCGGCGGC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATAcgc                     <  1:550436/123‑1 (MQ=255)

                                                                                                                                   cggcggC‑TTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATACGCGCATTCTGCGGCGtcatca  >  2:277691/1‑140 (MQ=255)

TGGCGCATACACCACGCGCAGATTCGACTCATCAACAATCAGCTCTGGATGGTCGTATTTCTTCTCTGACTTAATCAGCGAGAAATCATCAGGAATATAAGGGTTAAGCTCTGGCAAAGAGAGCGCAATGTCGGCGGCTTTTTTCTGCCAGTCGGCGAAAGTTTGTGCGCTGATTTTATCGACCTGATACGGCGCATCGACAAAGTAAGCCGTTTTGTTGTGCGGCTCTTTCGGGCTGATATACCAGATACGCGCATTCTGCGGCGTCATCA  >  NC_000913/2957271‑2957542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A