Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,013,537 T→C T235A (ACG→GCG)  yqeB ← XdhC‑CoxI family protein YqeB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,013,5370TC100.0% 323.4 / NA 90T235A (ACG→GCG) yqeBXdhC‑CoxI family protein YqeB
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (44/46);  total (44/46)

GGCGATATCTCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATG  >  NC_000913/3013400‑3013670
                                                                                                                                         |                                                                                                                                     
ggCGATATCTCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGTCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGctt                                                                                                                                     >  1:1288959/1‑140 (MQ=255)
 gCGATATCTCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTc                                                                                                                                    <  2:881605/140‑1 (MQ=255)
 gCGATATCTCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCCCCTGCGGCGCTTc                                                                                                                                    <  2:1342706/140‑1 (MQ=255)
 gCGATATCTCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCA‑CATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTcc                                                                                                                                   >  2:472384/1‑140 (MQ=255)
  cGATATCTCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCA‑CATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCg                                                                                                                                  <  1:472384/140‑1 (MQ=255)
   gATATCTCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCg                                                                                                                                  <  1:841903/140‑1 (MQ=255)
   gATATCTCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCg                                                                                                                                  <  1:1174677/140‑1 (MQ=255)
   gATATCTCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCg                                                                                                                                  <  2:710951/140‑1 (MQ=255)
   gATATCTCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCg                                                                                                                                  <  2:389208/140‑1 (MQ=255)
     tatCTCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTctcac                                                                                                                                <  1:930853/140‑5 (MQ=255)
      atCTCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCAc                                                                                                                               <  1:868202/140‑1 (MQ=255)
      atCTCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCAc                                                                                                                               <  2:103951/140‑1 (MQ=255)
      atCTCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCAc                                                                                                                               >  1:1371893/1‑140 (MQ=255)
      atCTCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCAc                                                                                                                               >  2:105406/1‑140 (MQ=255)
        ctcCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCAATCTCCTGCGGCGCTTCCGCACCt                                                                                                                             <  2:1081374/140‑1 (MQ=255)
           ccGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTAtg                                                                                                                          <  1:105406/140‑1 (MQ=255)
           ccGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTAtg                                                                                                                          >  2:694230/1‑140 (MQ=255)
                 cgcgAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTaa                                                                                                                    >  1:1353965/1‑140 (MQ=255)
                   cgAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCt                                                                                                                             <  1:284425/129‑1 (MQ=255)
                   cgAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCt                                                                                                                             >  2:284425/1‑129 (MQ=255)
                   cgAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTAtgttg                                                                                                                       <  2:1344132/135‑1 (MQ=255)
                   cgAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTAtgttg                                                                                                                       >  1:1344132/1‑135 (MQ=255)
                   cgAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTAtg                                                                                                                          <  2:1173676/132‑1 (MQ=255)
                   cgAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTAtg                                                                                                                          >  1:1173676/1‑132 (MQ=255)
                   cgAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAAcc                                                                                                                  >  2:144802/1‑140 (MQ=255)
                   cgAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAAcc                                                                                                                  >  2:258842/1‑140 (MQ=255)
                   cgAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAAcc                                                                                                                  >  2:92833/1‑140 (MQ=255)
                         accaccAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACggg                                                                                                            <  1:530085/140‑1 (MQ=255)
                         accaccAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACggg                                                                                                            <  1:92833/140‑1 (MQ=255)
                           caccaGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACg                                                                                                              >  1:672100/1‑136 (MQ=255)
                           caccaGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACg                                                                                                              <  2:672100/136‑1 (MQ=255)
                                     tgtCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACggg                                                                                                            >  2:705524/1‑128 (MQ=255)
                                     tgtCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACggg                                                                                                            <  1:705524/128‑1 (MQ=255)
                                      gtCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACgg                                                                                               <  1:1115584/140‑1 (MQ=255)
                                       tCCGGAAGGATGAGAAGGTTTCATCATCAGTCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACggg                                                                                              <  2:1288959/140‑1 (MQ=255)
                                         cGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCa                                                                                            <  1:1315126/140‑1 (MQ=255)
                                          ggAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACgg                                                                                               <  2:341900/136‑1 (MQ=255)
                                          ggAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACgg                                                                                               >  1:341900/1‑136 (MQ=255)
                                                 tGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGttc                                                                                    >  1:634234/1‑140 (MQ=255)
                                                 tGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGttc                                                                                    >  1:1388422/1‑140 (MQ=255)
                                                  gagaAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGttct                                                                                   >  2:787392/1‑140 (MQ=255)
                                                   agaAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGttctt                                                                                  <  1:1055363/140‑1 (MQ=255)
                                                         tttCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCa                                                                            <  2:1371893/140‑1 (MQ=255)
                                                          ttCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCAc                                                                           >  1:470203/1‑140 (MQ=255)
                                                          ttCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCAc                                                                           >  1:753066/1‑140 (MQ=255)
                                                          ttCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCAc                                                                           >  1:1468835/1‑140 (MQ=255)
                                                               catcaGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCtt                                                                      >  1:241565/1‑140 (MQ=255)
                                                                 tcaGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTtc                                                                    <  2:753066/140‑1 (MQ=255)
                                                                     cccACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGc                                                                         <  1:353985/131‑1 (MQ=255)
                                                                     cccACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGc                                                                         >  2:353985/1‑131 (MQ=255)
                                                                      ccACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACg                                                               >  1:257680/1‑140 (MQ=255)
                                                                            ggCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTg                                                         >  2:587412/1‑140 (MQ=255)
                                                                            ggCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTg                                                         >  2:571062/1‑140 (MQ=255)
                                                                             gcgcGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGa                                                        >  2:532289/1‑140 (MQ=255)
                                                                                    tattttCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGa                                                 <  2:13189/138‑1 (MQ=255)
                                                                                          cACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACg                                                      >  2:286564/1‑129 (MQ=255)
                                                                                          cACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACg                                                      <  1:286564/129‑1 (MQ=255)
                                                                                                  atatTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTg                                   >  2:287348/1‑140 (MQ=255)
                                                                                                        cTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGcgacga                             >  1:693343/1‑140 (MQ=255)
                                                                                                        cTGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGcgacga                             >  1:922415/1‑140 (MQ=255)
                                                                                                         tGCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCgacgac                            <  1:221020/140‑1 (MQ=255)
                                                                                                          gCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACt                           >  1:754905/1‑140 (MQ=255)
                                                                                                          gCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACt                           >  1:413726/1‑140 (MQ=255)
                                                                                                          gCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACt                           >  2:792213/1‑140 (MQ=255)
                                                                                                          gCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACt                           >  1:311206/1‑140 (MQ=255)
                                                                                                          gCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACt                           >  1:218076/1‑140 (MQ=255)
                                                                                                          gCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACt                           >  2:218375/1‑140 (MQ=255)
                                                                                                          gCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACt                           >  1:516399/1‑140 (MQ=255)
                                                                                                          gCCAGCACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACt                           >  2:188159/1‑140 (MQ=255)
                                                                                                          gCCAGCACGCTGATGGCGAGCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACt                           <  1:532289/140‑1 (MQ=255)
                                                                                                               cACGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCa                      >  2:213997/1‑140 (MQ=255)
                                                                                                                aCGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAg                     <  2:470203/140‑1 (MQ=255)
                                                                                                                aCGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAg                     <  2:1468835/140‑1 (MQ=255)
                                                                                                                aCGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAg                     <  2:516399/140‑1 (MQ=255)
                                                                                                                 cGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGc                    <  2:311206/140‑1 (MQ=255)
                                                                                                                 cGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGc                    <  2:84548/140‑1 (MQ=255)
                                                                                                                 cGCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGc                    <  2:1175392/140‑1 (MQ=255)
                                                                                                                  gCTGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCa                   >  1:477282/1‑140 (MQ=255)
                                                                                                                    tGATGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAGGCTGAACCTTGCGACGACTTGCCAGCAAc                 <  2:241565/140‑1 (MQ=255)
                                                                                                                      aTGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAAccc               <  2:634234/140‑1 (MQ=255)
                                                                                                                      aTGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAAccc               <  1:587412/140‑1 (MQ=255)
                                                                                                                      aTGGCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAAccc               <  1:571062/140‑1 (MQ=255)
                                                                                                                         gCGATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCaa            <  1:792213/140‑1 (MQ=255)
                                                                                                                           gATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAAcc          <  2:827363/140‑1 (MQ=255)
                                                                                                                           gATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAAcc          <  1:287348/140‑1 (MQ=255)
                                                                                                                           gATCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAAcc          <  2:477282/140‑1 (MQ=255)
                                                                                                                            aTCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAAcc          >  1:1187230/1‑139 (MQ=255)
                                                                                                                            aTCTCCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAAcc          <  2:1187230/139‑1 (MQ=255)
                                                                                                                              ctcCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATg       >  1:564856/1‑140 (MQ=255)
                                                                                                                              ctcCTGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATg       >  2:1309544/1‑140 (MQ=255)
                                                                                                                                  tGCGGCGCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAAt   <  2:257680/140‑1 (MQ=255)
                                                                                                                                   gcggcgCTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATg  >  1:974732/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                     
GGCGATATCTCCCGCACCGCGAATCACCACCAGCTGGTGTCCGGAAGGATGAGAAGGTTTCATCATCAGCCCACCCGGCGCGTTATTTTTCACCTGTAATATTTCTGCCAGCACGCTGATGGCGATCTCCTGCGGCGTTTCCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATG  >  NC_000913/3013400‑3013670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A