Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F28 I1 R1	227	52.0	1764248	99.3%	1751898	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,013,671	G→A	P190L (CCC→CTC)	yqeB ←	XdhC‑CoxI family protein YqeB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,013,671	0	G	A	100.0%	202.6 / NA	57	P190L (CCC→CTC)	yqeB	XdhC‑CoxI family protein YqeB
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (29/28); total (29/28)

CCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGGGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGACTCAGCATGGAGAAGCGTGGTTGATGGTGGGAA  >  NC_000913/3013540‑3013810

ccGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCa                                                                                                                                     <  2:48730/140‑1 (MQ=255)

         tgttgtAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTg                                                                                                                            >  2:599468/1‑140 (MQ=255)

         tgttgtAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTg                                                                                                                            >  1:800861/1‑140 (MQ=255)

              tAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAg                                                                                                                       <  1:599468/140‑1 (MQ=255)

                aCCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTc                                                                                                                          <  2:281156/135‑1 (MQ=255)

                aCCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTc                                                                                                                          >  1:281156/1‑135 (MQ=255)

                aCCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAggg                                                                                                                     >  2:589130/1‑140 (MQ=255)

                aCCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAggg                                                                                                                     <  2:152465/140‑1 (MQ=255)

                aCCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAggg                                                                                                                     >  1:71089/1‑140 (MQ=255)

                 ccAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGc                                                                                                                    <  1:283278/140‑1 (MQ=255)

                   aaCGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGa                                                                                                                        <  1:881692/134‑1 (MQ=255)

                   aaCGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGa                                                                                                                        >  2:53314/1‑134 (MQ=255)

                   aaCGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGa                                                                                                                        <  1:53314/134‑1 (MQ=255)

                   aaCGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGa                                                                                                                        >  2:881692/1‑134 (MQ=255)

                   aaCGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCtt                                                                                                                  >  2:440927/1‑140 (MQ=255)

                    aCGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTc                                                                                                                 <  1:856453/140‑1 (MQ=255)

                    aCGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTc                                                                                                                 >  1:681297/1‑140 (MQ=255)

                     cGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCa                                                                                                                >  2:47571/1‑140 (MQ=255)

                     cGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCa                                                                                                                >  2:753010/1‑140 (MQ=255)

                     cGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCa                                                                                                                <  1:47571/140‑1 (MQ=255)

                     cGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCa                                                                                                                >  1:729323/1‑140 (MQ=255)

                     cGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCa                                                                                                                >  1:690068/1‑140 (MQ=255)

                     cGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCa                                                                                                                >  2:15697/1‑140 (MQ=255)

                     cGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCa                                                                                                                <  1:589130/140‑1 (MQ=255)

                         cgcATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCa                                                                                                                <  2:458931/136‑1 (MQ=255)

                         cgcATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCa                                                                                                                >  1:458931/1‑136 (MQ=255)

                         cgcATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGAt                                                                                                            <  1:753010/140‑1 (MQ=255)

                                      gCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGt                                                                                               >  1:805847/1‑140 (MQ=255)

                                                cttcAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAgg                                                                                     <  2:681297/140‑1 (MQ=255)

                                                  tcAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGAc                                                                                   >  1:581731/1‑140 (MQ=255)

                                                  tcAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGAc                                                                                   <  2:805847/140‑1 (MQ=255)

                                                   cAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACa                                                                                  >  1:569082/1‑140 (MQ=255)

                                                      ccACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACaaaa                                                                               >  2:429849/1‑140 (MQ=255)

                                                                ctcACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGc                                                                     >  2:567797/1‑140 (MQ=255)

                                                                     gCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAata                                                                >  2:722596/1‑140 (MQ=255)

                                                                      cAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAatat                                                               >  1:681382/1‑140 (MQ=255)

                                                                           gACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGt                                                          <  2:729323/140‑1 (MQ=255)

                                                                                 ggAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTcc                                                    >  2:392349/1‑140 (MQ=255)

                                                                                          gAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCa                                           <  1:722596/140‑1 (MQ=255)

                                                                                            aCCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCAcc                                         >  2:562827/1‑140 (MQ=255)

                                                                                                 gCGACGACTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACg                                    >  2:543526/1‑140 (MQ=255)

                                                                                                  cgacgaCTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGa                                   <  1:15697/140‑1 (MQ=255)

                                                                                                  cgacgaCTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGa                                   <  2:569082/140‑1 (MQ=255)

                                                                                                    acgacTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGACt                                 <  1:529394/140‑1 (MQ=255)

                                                                                                    acgacTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGACt                                 <  1:392349/140‑1 (MQ=255)

                                                                                                    acgacTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGACt                                 <  1:440927/140‑1 (MQ=255)

                                                                                                    acgacTTGCCAGCAACCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGACt                                 <  1:543526/140‑1 (MQ=255)

                                                                                                                 aaCCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGACTCAGCATGGAGAAg                    <  1:242550/140‑1 (MQ=255)

                                                                                                                  aCCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGACt                                 >  2:92942/1‑126 (MQ=255)

                                                                                                                  aCCCCAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGACt                                 <  1:92942/126‑1 (MQ=255)

                                                                                                                   ccccAACCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGACTCAGCATGGAGAAGCg                  >  2:392712/1‑140 (MQ=255)

                                                                                                                       aaCCATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGACTCAGCATGGAGAAGCGTGGt              <  2:681382/140‑1 (MQ=255)

                                                                                                                         ccATGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGACTCAGCATGGAGAAGCGTGGTTg            <  2:625618/140‑1 (MQ=255)

                                                                                                                            tGCAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGACTCAGCATGGAGAAGCGTGGTTGAtg         <  2:800861/140‑1 (MQ=255)

                                                                                                                              cAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGACTCAGCATGGAGAAGCGTGGTTg            <  2:141966/135‑1 (MQ=255)

                                                                                                                              cAATGAGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGACTCAGCATGGAGAAGCGTGGTTg            >  1:141966/1‑135 (MQ=255)

                                                                                                                              cAATGAGCTGTTCAATGAGCTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGACTCAGCATGGAGAAGCGTGGTTGAtggt       >  1:50185/1‑140 (MQ=255)

                                                                                                                                   ggCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGACTCAGCATGGAGAAGCGTGGTTGATGGTGGGaa  >  1:859369/1‑140 (MQ=255)

CCGCACCTATGTTGTAACCAACGGGCGCATGTAAACGGGCAATATGTTCTTCAGCCACGCCTTTCTCACGCAATTGACGCAGGAAAAGCTGAACCTTGCGACGACTTGCCAGCAACCCCAACCATGCAATGGGCTGTTCAATGAGTTTGTCGAGGGCTTCACGATCCTGATTATTCGTGGCAATCAGGACAAAATTATCAGGGCGAATATCCAGTGCTTCCACTGCCGCACCAAACGACTCAGCATGGAGAAGCGTGGTTGATGGTGGGAA  >  NC_000913/3013540‑3013810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A