Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	151	87.4	2971636	99.2%	2947862	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,108,163	T→C	E331E (GAA→GAG)	speC ←	ornithine decarboxylase, biosynthetic

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,108,163	0	T	C	100.0%	320.4 / NA	90	E331E (GAA→GAG)	speC	ornithine decarboxylase, biosynthetic
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (42/48); total (42/48)

ACCGCTTATGCGGGCAAAAACGCGCCTGTCCGCGGATATGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGTTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACGGGCGTTATAGACAGTG  >  NC_000913/3108027‑3108295

aCCGCTTATGCGGGCAAAAACGCGCCTGTCCGCGGATATGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGctct                                                                                                                                   <  1:986638/140‑1 (MQ=255)

    cTTATGCGGGCAAAAACGCGCCTGTCCGCGGATATGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAAca                                                                                                                               >  2:147191/1‑140 (MQ=255)

     ttATGCGGGCAAAAACGCGCCTGTCCGCGGATATGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAAcag                                                                                                                              >  2:1146723/1‑140 (MQ=255)

       aTGCGGGCAAAAACGCGCCTGTCCGCGGATATGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAAcagca                                                                                                                            <  2:1298743/140‑1 (MQ=255)

       aTGCGGGCAAAAACGCGCCTGTCCGCGGATATGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAAcagca                                                                                                                            <  2:1258828/140‑1 (MQ=255)

          cGGGCAAAAACGCGCCTGTCCGCGGATATGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAgcg                                                                                                                         >  2:1475032/1‑140 (MQ=255)

            ggCAAAAACGCGCCTGTCCGCGGATATGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAgcggc                                                                                                                       >  1:76697/1‑140 (MQ=255)

            ggCAAAAACGCGCCTGTCCGCGGATATGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAgcggc                                                                                                                       <  2:1299551/140‑1 (MQ=255)

              cAAAAACGCGCCTGTCCGCGGATATGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGa                                                                                                                     >  1:842150/1‑140 (MQ=255)

                       gcCTGTCCGCGGATATGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGc                                                                                                            >  1:1251874/1‑140 (MQ=255)

                       gcCTGTCCGCGGATATGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGc                                                                                                            <  1:789659/140‑1 (MQ=255)

                        ccTGTCCGCGGATATGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGcc                                                                                                           <  1:821982/140‑1 (MQ=255)

                              cgcgGATATGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCatcatc                                                                                                     <  2:1251874/140‑1 (MQ=255)

                                  gATATGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGa                                                                                                 <  1:147191/140‑1 (MQ=255)

                                     atGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATaa                                                                                              >  2:69721/1‑140 (MQ=255)

                                      tGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATaaa                                                                                             >  2:474706/1‑140 (MQ=255)

                                      tGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATaaa                                                                                             <  2:310798/140‑1 (MQ=255)

                                           aTCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGtt                                                                                        <  2:1082891/140‑1 (MQ=255)

                                                ttttATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATaa                                                                                   >  1:1118497/1‑140 (MQ=255)

                                                 tttATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGAAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAAc                                                                                  >  2:1176703/1‑140 (MQ=255)

                                                   tATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCg                                                                                >  2:841917/1‑140 (MQ=255)

                                                   tATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCg                                                                                >  2:1213826/1‑140 (MQ=255)

                                                          cTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCAcg                                                                         <  2:1429486/140‑1 (MQ=255)

                                                            gCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCAcgcg                                                                       <  2:920267/140‑1 (MQ=255)

                                                                cGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAAt                                                                   <  2:537694/140‑1 (MQ=255)

                                                                  tCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCa                                                                 >  2:961868/1‑140 (MQ=255)

                                                                  tCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCa                                                                 >  1:189324/1‑140 (MQ=255)

                                                                    tgtgAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCaaa                                                               >  1:787288/1‑140 (MQ=255)

                                                                    tgtgAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCaaa                                                               >  2:1450555/1‑140 (MQ=255)

                                                                    tgtgAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCaaa                                                               >  2:838784/1‑140 (MQ=255)

                                                                      tgAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACa                                                             >  1:1429231/1‑140 (MQ=255)

                                                                           aTCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATg                                                        <  2:842150/140‑1 (MQ=255)

                                                                           aTCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATg                                                        >  1:1344626/1‑140 (MQ=255)

                                                                            tCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGt                                                       >  1:1326323/1‑140 (MQ=255)

                                                                              ccGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTaa                                                     >  2:803316/1‑140 (MQ=255)

                                                                               cGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGAAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAAt                                                    <  1:1176703/140‑1 (MQ=255)

                                                                                gCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATc                                                   >  1:1287944/1‑140 (MQ=255)

                                                                                 ccTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATca                                                  <  2:1456922/140‑1 (MQ=255)

                                                                                      tgTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAg                                             <  2:1344626/140‑1 (MQ=255)

                                                                                      tgTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTCCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAg                                             <  2:1326323/140‑1 (MQ=255)

                                                                                        tttGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATcaca                                                <  2:618144/135‑1 (MQ=255)

                                                                                        tttGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATcaca                                                >  1:618144/1‑135 (MQ=255)

                                                                                        tttGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGAt                                           <  2:1118497/140‑1 (MQ=255)

                                                                                         ttGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATg                                          <  1:69721/140‑1 (MQ=255)

                                                                                            tgCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGccc                                       <  1:474706/140‑1 (MQ=255)

                                                                                              cACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCaa                                     <  2:1429231/140‑1 (MQ=255)

                                                                                              cACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCaa                                     <  1:1213826/140‑1 (MQ=255)

                                                                                               aCCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCaa                                     >  2:468446/1‑139 (MQ=255)

                                                                                               aCCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCaa                                     <  1:468446/139‑1 (MQ=255)

                                                                                                  gACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGcc                                        >  2:273999/1‑133 (MQ=255)

                                                                                                  gACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGcc                                        <  1:273999/133‑1 (MQ=255)

                                                                                                  gACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGt                                 >  1:10603/1‑140 (MQ=255)

                                                                                                  gACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGt                                 >  2:1163371/1‑140 (MQ=255)

                                                                                                   aCTGAGTCATAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTa                                >  2:996998/1‑140 (MQ=255)

                                                                                                   aCTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACg                                   <  1:802385/137‑1 (MQ=255)

                                                                                                   aCTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTa                                >  1:1343806/1‑140 (MQ=255)

                                                                                                   aCTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTa                                >  2:1001451/1‑140 (MQ=255)

                                                                                                   aCTGAGTCACAAAGATCACCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACg                                   >  2:802385/1‑137 (MQ=255)

                                                                                                    cTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTAt                               <  2:76697/140‑1 (MQ=255)

                                                                                                      gAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCg                             <  1:961868/140‑1 (MQ=255)

                                                                                                             aaaGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGAt                           >  1:967883/1‑135 (MQ=255)

                                                                                                             aaaGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGAt                           <  2:967883/135‑1 (MQ=255)

                                                                                                             aaaGATCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCt                      >  2:1157360/1‑140 (MQ=255)

                                                                                                                  tCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACgg                 <  2:770160/140‑1 (MQ=255)

                                                                                                                  tCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACgg                 <  2:1218376/140‑1 (MQ=255)

                                                                                                                  tCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACgg                 <  2:787288/140‑1 (MQ=255)

                                                                                                                  tCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACgg                 <  1:1146723/140‑1 (MQ=255)

                                                                                                                  tCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACgg                 <  1:1157360/140‑1 (MQ=255)

                                                                                                                  tCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACgg                 <  2:439091/140‑1 (MQ=255)

                                                                                                                  tCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACgg                 <  1:181779/140‑1 (MQ=255)

                                                                                                                  tCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACgg                 <  2:189324/140‑1 (MQ=255)

                                                                                                                  tCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACgg                 >  1:733234/1‑140 (MQ=255)

                                                                                                                  tCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACgg                 <  1:778697/140‑1 (MQ=255)

                                                                                                                  tCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACgg                 <  1:803316/140‑1 (MQ=255)

                                                                                                                  tCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACgg                 <  1:838784/140‑1 (MQ=255)

                                                                                                                  tCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACgg                 <  1:89533/140‑1 (MQ=255)

                                                                                                                  tCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACgg                 <  2:1287944/140‑1 (MQ=255)

                                                                                                                  tCCCCGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACgg                 <  2:10603/140‑1 (MQ=255)

                                                                                                                   ccccGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACggg                <  1:1450555/140‑1 (MQ=255)

                                                                                                                   ccccGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACggg                >  2:541944/1‑140 (MQ=255)

                                                                                                                     ccGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACGGGCg              >  1:26321/1‑140 (MQ=255)

                                                                                                                      cGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGa                    <  1:159180/133‑1 (MQ=255)

                                                                                                                      cGGATCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGa                    >  2:159180/1‑133 (MQ=255)

                                                                                                                          tCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACGGGCGTtata         >  1:1093039/1‑140 (MQ=255)

                                                                                                                          tCGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACGGGCGTtata         >  1:327079/1‑140 (MQ=255)

                                                                                                                           cGTTTTCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACGGGCGTTATAg        >  1:254836/1‑140 (MQ=255)

                                                                                                                             ttttCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGAc                   <  2:1114343/127‑1 (MQ=255)

                                                                                                                             ttttCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGAc                   >  1:1114343/1‑127 (MQ=255)

                                                                                                                             ttttCGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACGGGCGTTATAGAc      >  1:678156/1‑140 (MQ=255)

                                                                                                                                 cGTTAAGCTCTAACGGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACGGGCGTTATAGACAGTg  <  2:1093039/140‑1 (MQ=255)

                                                                                                                                 cGTTAAGCTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACGGGCGTTATAGACAGTg  <  2:327079/140‑1 (MQ=255)

ACCGCTTATGCGGGCAAAAACGCGCCTGTCCGCGGATATGGTTATCTTTTTTATGGATCTGCGACGTCTGTGAGAATCCCGCCTGCTGTTTGTGCACCGACTGAGTCACAAAGATCCCCGGATCGTTTTCGTTAAGTTCTAACAGCAGCGGCGAGCTATCCGCCATCATCGGGATAAATTGTTCATAACCGACCCACGCGGAATCAAACAGAATGTAATCACACAGATGCCCAACGGTATCGATCACCTGACGGGCGTTATAGACAGTG  >  NC_000913/3108027‑3108295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A