Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	151	87.4	2971636	99.2%	2947862	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,268,419	T→C	F2S (TTC→TCC)	yhaC →	uncharacterized protein YhaC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,268,419	0	T	C	100.0%	322.8 / NA	90	F2S (TTC→TCC)	yhaC	uncharacterized protein YhaC
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (40/50); total (40/50)

CTTAACCCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTTCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAGACCTCTA  >  NC_000913/3268294‑3268553

cTTAACCCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCaa                                                                                                                          <  1:259493/140‑1 (MQ=255)

 ttAACCCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAAt                                                                                                                         <  1:469725/140‑1 (MQ=255)

 ttAACCCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAAt                                                                                                                         <  2:1360089/140‑1 (MQ=255)

 ttAACCCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAAt                                                                                                                         <  2:890121/140‑1 (MQ=255)

     ccccccTTGTGCACTTTAATAAAACCAGCATTCCTTCAGACTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGt                                                                                                                     <  2:1314567/140‑1 (MQ=255)

     ccccccTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGt                                                                                                                     <  2:407483/140‑1 (MQ=255)

      cccccTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTa                                                                                                                    <  1:1302453/140‑1 (MQ=255)

      cccccTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTa                                                                                                                    <  1:1484452/140‑1 (MQ=255)

      cccccTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTa                                                                                                                    <  2:345307/140‑1 (MQ=255)

         ccTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAAt                                                                                                                         >  2:1456510/1‑132 (MQ=255)

         ccTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAAt                                                                                                                         <  1:1456510/132‑1 (MQ=255)

          cTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTa                                                                                                                    <  1:728888/136‑1 (MQ=255)

          cTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTa                                                                                                                    >  2:728888/1‑136 (MQ=255)

          cTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGa                                                                                                                >  1:1363598/1‑140 (MQ=255)

          cTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGa                                                                                                                >  1:1344299/1‑140 (MQ=255)

             gtgCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTa                                                                                                                    <  1:1093345/133‑1 (MQ=255)

             gtgCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAACAATGTCCCCTGTTTCATCAATTGGTa                                                                                                                    >  2:1093345/1‑133 (MQ=255)

              tgCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATAtt                                                                                                            >  1:1401723/1‑140 (MQ=255)

              tgCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATAtt                                                                                                            >  2:1056877/1‑140 (MQ=255)

                  cTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATtagta                                                                                                        >  1:1132618/1‑140 (MQ=255)

                   tttAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATtagtag                                                                                                       >  1:508246/1‑140 (MQ=255)

                   tttAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATtagtag                                                                                                       <  1:1224700/140‑1 (MQ=255)

                   tttAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATtagtag                                                                                                       >  1:1205590/1‑140 (MQ=255)

                   tttAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATtagtag                                                                                                       >  2:1089645/1‑140 (MQ=255)

                     taataaAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTa                                                                                                                    <  1:789994/125‑1 (MQ=255)

                     taataaAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTa                                                                                                                    >  2:789994/1‑125 (MQ=255)

                            aCCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGt                                                                                              <  2:1132618/140‑1 (MQ=255)

                             ccAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTc                                                                                             >  2:1134116/1‑140 (MQ=255)

                             ccAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTc                                                                                             >  1:1354913/1‑140 (MQ=255)

                                 cATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTc                                                                                         >  1:422465/1‑140 (MQ=255)

                                  aTTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCg                                                                                        >  2:1047248/1‑140 (MQ=255)

                                      cTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGaaaa                                                                                    >  2:891217/1‑140 (MQ=255)

                                      cTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGaaaa                                                                                    >  1:1115159/1‑140 (MQ=255)

                                         cAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAaatg                                                                                 >  2:450570/1‑140 (MQ=255)

                                           gATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAaatgaa                                                                               <  1:891217/140‑1 (MQ=255)

                                           gATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAaatgaa                                                                               <  2:422465/140‑1 (MQ=255)

                                               gttgGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGAc                                                                           <  1:541285/140‑1 (MQ=255)

                                                ttgGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGAcc                                                                          >  2:785309/1‑140 (MQ=255)

                                                ttgGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGAcc                                                                          >  1:524981/1‑140 (MQ=255)

                                                 tgGCAAATTCTC‑TTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGaaa                                                                                     <  1:306041/127‑1 (MQ=255)

                                                 tgGCAAATTCTC‑TTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGaaa                                                                                     >  2:306041/1‑127 (MQ=255)

                                                       aTTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGa                                                                   <  1:1089645/140‑1 (MQ=255)

                                                            ctTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGcc                                                              <  2:1363598/140‑1 (MQ=255)

                                                             tttttttCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGccc                                                             <  1:636805/140‑1 (MQ=255)

                                                                ttttCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAAc                                                          <  2:113189/140‑1 (MQ=255)

                                                                     aCCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGaa                                                     >  1:562684/1‑140 (MQ=255)

                                                                        cGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATa                                                  <  1:450570/140‑1 (MQ=255)

                                                                          aTCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAAc                                                >  2:945275/1‑140 (MQ=255)

                                                                          aTCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAAc                                                >  1:1357272/1‑140 (MQ=255)

                                                                              ttttAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCg                                            <  1:1047248/140‑1 (MQ=255)

                                                                               tttAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGa                                           <  2:562684/140‑1 (MQ=255)

                                                                                 taataaTGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGa                                           >  2:232691/1‑138 (MQ=255)

                                                                                 taataaTGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCACAACAGGAAATAACCTCGa                                           <  1:232691/138‑1 (MQ=255)

                                                                                   ataatGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCa                                       <  2:1109686/140‑1 (MQ=255)

                                                                                    taatGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCAc                                      >  1:272315/1‑140 (MQ=255)

                                                                                    taatGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCAc                                      <  2:1354913/140‑1 (MQ=255)

                                                                                     aatGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACt                                     >  2:1223046/1‑140 (MQ=255)

                                                                                     aatGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACt                                     <  1:785309/140‑1 (MQ=255)

                                                                                     aatGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACt                                     <  2:272315/140‑1 (MQ=255)

                                                                                      atGATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTa                                    <  2:26634/140‑1 (MQ=255)

                                                                                        gATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCt                                              <  2:383447/128‑1 (MQ=255)

                                                                                        gATTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCt                                              >  1:383447/1‑128 (MQ=255)

                                                                                         aTTTTTATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCa                                 <  2:1162715/140‑1 (MQ=255)

                                                                                          tttttATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCAc                                <  2:1205590/140‑1 (MQ=255)

                                                                                           ttttATTGATTATTTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCAcc                               <  1:775333/140‑1 (MQ=255)

                                                                                                   attattTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAg                       >  2:451586/1‑140 (MQ=255)

                                                                                                   attattTATAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAg                       >  1:990637/1‑140 (MQ=255)

                                                                                                    ttatttatAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGa                      >  2:192324/1‑140 (MQ=255)

                                                                                                    ttatttatAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGa                      <  1:688274/140‑1 (MQ=255)

                                                                                                    ttatttatAAAGGATAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGa                      <  2:1344299/140‑1 (MQ=255)

                                                                                                                 aTAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACa          >  2:1461215/1‑139 (MQ=255)

                                                                                                                 aTAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACa          <  1:1461215/139‑1 (MQ=255)

                                                                                                                 aTAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAg         >  2:191882/1‑140 (MQ=255)

                                                                                                                 aTAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAg         >  1:597028/1‑140 (MQ=255)

                                                                                                                 aTAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAg         >  1:1109277/1‑140 (MQ=255)

                                                                                                                 aTAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAg         >  1:872251/1‑140 (MQ=255)

                                                                                                                 aTAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAg         >  2:1098674/1‑140 (MQ=255)

                                                                                                                 aTAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGCCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTaaaa            >  1:733730/1‑137 (MQ=255)

                                                                                                                 aTAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGCCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTaaaa            <  2:733730/137‑1 (MQ=255)

                                                                                                                  tAAAATAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAGa        >  2:479859/1‑140 (MQ=255)

                                                                                                                   aaaaTAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAGAc       <  1:952388/140‑1 (MQ=255)

                                                                                                                   aaaaTAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAGAc       <  1:192324/140‑1 (MQ=255)

                                                                                                                   aaaaTAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAGAc       <  1:218488/140‑1 (MQ=255)

                                                                                                                   aaaaTAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAGAc       <  2:508246/140‑1 (MQ=255)

                                                                                                                   aaaaTAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAGAc       <  2:1109277/140‑1 (MQ=255)

                                                                                                                   aaaaTAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAGAc       <  1:451586/140‑1 (MQ=255)

                                                                                                                    aaaTAATGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAGAcc      <  1:479859/140‑1 (MQ=255)

                                                                                                                      ataatGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAGACctc    <  2:1183606/140‑1 (MQ=255)

                                                                                                                      ataatGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAGACctc    <  1:28256/140‑1 (MQ=255)

                                                                                                                        aatGTCCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAGACCTCTa  <  1:945275/140‑1 (MQ=255)

CTTAACCCCCCTTGTGCACTTTAATAAAACCAGCATTACTTCAGATTGTTGGCAAATTCTCTTTTTTTCACCCGATCATTTTAATAATGATTTTTATTGATTATTTATAAAGGATAAAATAATGTTCCCTGTTTCATCAATTGGTAATGATATTAGTAGTGATTTAGTCCGTCGAAAAATGAATGACCTTCCTGAAAGCCCAACAGGAAATAACCTCGAAGCACTAGCACCAGGTATAGAAAAACTAAAACAGACCTCTA  >  NC_000913/3268294‑3268553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A