Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	151	87.4	2971636	99.2%	2947862	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,314,929	G→A	G362G (GGC→GGT)	infB ←	translation initiation factor IF‑2

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,314,929	0	G	A	100.0%	266.5 / NA	75	G362G (GGC→GGT)	infB	translation initiation factor IF‑2
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (37/38); total (37/38)

AGCAGAGAGGTTTTACCGTGGTCAACGTGACCCATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGGCCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCGCTTTGATGACCTGAGAGCCTTTAACCGCCATCTTGTTCGCCAGTTCGCCAA  >  NC_000913/3314792‑3315062

agcagAGAGGTTTTACCGTGGTCAACGTGACCCATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCGCGACGCAGGATAACTTTATGAcc                                                                                                                                     <  2:705316/140‑1 (MQ=255)

agcagAGAGGTTTTACCGTGGTCAACGTGACCCATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGAcc                                                                                                                                     >  2:921044/1‑140 (MQ=255)

 gcagAGAGGTTTTACCGTGGTCAACGTGACCCATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTGCCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGAccc                                                                                                                                    >  2:738752/1‑140 (MQ=255)

 gcagAGAGGTTTTACCGTGGTCAACGTGACCCATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGAccc                                                                                                                                    >  2:1381131/1‑140 (MQ=255)

     agagGTTTTACCGTGGTCAACGTGACCCATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCAt                                                                                                                                  >  1:1350717/1‑138 (MQ=255)

     agagGTTTTACCGTGGTCAACGTGACCCATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCAt                                                                                                                                  <  2:1350717/138‑1 (MQ=255)

       agGTTTTACCGTGGTCAACGTGACCCATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATctct                                                                                                                              >  1:922730/1‑140 (MQ=255)

       agGTTTTACCGTGGTCAACGTGACCCATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATctct                                                                                                                              >  2:101655/1‑140 (MQ=255)

            ttACCGTGGTCAACGTGACCCATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGc                                                                                                                         <  2:922730/140‑1 (MQ=255)

               ccGTGGTCAACGTGACCCATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAAc                                                                                                                      <  2:1025250/140‑1 (MQ=255)

                   ggTCAACGTGACCCATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGc                                                                                                                  >  2:500237/1‑140 (MQ=255)

                    gTCAACGTGACCCATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTCTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCt                                                                                                                 <  2:228166/140‑1 (MQ=255)

                         cGTGACCCATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCg                                                                                                            >  2:884154/1‑140 (MQ=255)

                          gTGACCCATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCgg                                                                                                           >  1:1046276/1‑140 (MQ=255)

                             aCCCATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGttt                                                                                                        >  2:1153671/1‑140 (MQ=255)

                              cccATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTc                                                                                                       >  2:740259/1‑140 (MQ=255)

                               ccATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTcc                                                                                                      >  2:309791/1‑140 (MQ=255)

                                cATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCt                                                                                                     <  1:492315/140‑1 (MQ=255)

                                 atgatgGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTg                                                                                                    >  1:1181104/1‑140 (MQ=255)

                                   gatgGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCt                                                                                                     <  2:534548/137‑1 (MQ=255)

                                   gatgGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCt                                                                                                     >  1:534548/1‑137 (MQ=255)

                                      ggTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGa                                                                                               <  1:884154/140‑1 (MQ=255)

                                       gTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGAt                                                                                              >  2:417094/1‑140 (MQ=255)

                                        tCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGGTAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATa                                                                                             >  1:203716/1‑140 (MQ=255)

                                        tCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATa                                                                                             <  1:1312086/140‑1 (MQ=255)

                                        tCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATa                                                                                             >  1:931146/1‑140 (MQ=255)

                                        tCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATa                                                                                             >  2:377853/1‑140 (MQ=255)

                                         cacaACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCt                                                                                                     <  1:1414140/131‑1 (MQ=255)

                                         cacaACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCt                                                                                                     >  2:1414140/1‑131 (MQ=255)

                                          acaACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTGCCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAAc                                                                                           <  1:135673/140‑1 (MQ=255)

                                          acaACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAAc                                                                                           <  2:202134/140‑1 (MQ=255)

                                            aaCCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGa                                                                                               <  1:711833/134‑1 (MQ=255)

                                            aaCCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGa                                                                                               >  2:711833/1‑134 (MQ=255)

                                            aaCCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCt                                                                                         >  2:176981/1‑140 (MQ=255)

                                            aaCCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCt                                                                                         >  1:1391037/1‑140 (MQ=255)

                                              ccGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAAcc                                                                                          <  1:1347666/137‑1 (MQ=255)

                                              ccGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAAcc                                                                                          >  2:1347666/1‑137 (MQ=255)

                                              ccGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTgg                                                                                       >  1:1182863/1‑140 (MQ=255)

                                               cGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTGCCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGt                                                                                      <  1:738752/140‑1 (MQ=255)

                                                 gcgcgcgcGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGGTAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTg                                                                                    <  2:203716/140‑1 (MQ=255)

                                                 gcgcgcgcGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATaa                                                                                            <  1:885708/132‑1 (MQ=255)

                                                 gcgcgcgcGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATaa                                                                                            >  2:885708/1‑132 (MQ=255)

                                                 gcgcgcgcGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTg                                                                                    >  1:360611/1‑140 (MQ=255)

                                                 gcgcgcgcGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTg                                                                                    <  1:1153671/140‑1 (MQ=255)

                                                 gcgcgcgcGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTg                                                                                    <  1:1381131/140‑1 (MQ=255)

                                                                ccGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTgcg                                                                     <  1:101655/140‑1 (MQ=255)

                                                                ccGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTgcg                                                                     <  1:328467/140‑1 (MQ=255)

                                                                ccGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTgcg                                                                     <  1:500237/140‑1 (MQ=255)

                                                                  gcagcaCCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGcc                                                                   <  2:931146/140‑1 (MQ=255)

                                                                  gcagcaCCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGcc                                                                   <  1:740259/140‑1 (MQ=255)

                                                                  ccagccCCCGTGTCACGGTCGCTCTTTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGcc                                                                   <  2:360611/139‑1 (MQ=255)

                                                                   cagcaCCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGccc                                                                  >  2:7849/1‑140 (MQ=255)

                                                                    agcaCCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTg                                                                             <  2:965193/128‑1 (MQ=255)

                                                                    agcaCCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTg                                                                             >  1:965193/1‑128 (MQ=255)

                                                                             gtCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTtcatca                                                        <  1:7849/140‑1 (MQ=255)

                                                                                aCGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCg                                                     >  2:745651/1‑140 (MQ=255)

                                                                                aCGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCg                                                     >  1:897886/1‑140 (MQ=255)

                                                                                aCGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCg                                                     <  1:377853/140‑1 (MQ=255)

                                                                                aCGGTCACTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCg                                                     >  2:783633/1‑140 (MQ=255)

                                                                                  ggTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCGCt                                                   <  2:1391037/140‑1 (MQ=255)

                                                                                      gCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCGCTTtga                                               >  2:1290539/1‑140 (MQ=255)

                                                                                       cTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCGCTTtgat                                              <  2:1046276/140‑1 (MQ=255)

                                                                                       cTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCGCTTtgat                                              <  1:921044/140‑1 (MQ=255)

                                                                                              ccGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTtcatca                                                        <  1:1015534/123‑1 (MQ=255)

                                                                                              ccGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTtcatca                                                        >  2:1015534/1‑123 (MQ=255)

                                                                                              ccGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCGCTTTGATGACCTga                                       >  2:54394/1‑140 (MQ=255)

                                                                                               cGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCGCTTTGATGACCTgag                                      <  1:176981/140‑1 (MQ=255)

                                                                                                 ccTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCGCTTTGATGACCTGagag                                    >  1:1093274/1‑140 (MQ=255)

                                                                                                        cAGCTCGTTTTCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCGCTTTGATGACCTGAGAGCCTTTaa                             <  1:783633/140‑1 (MQ=255)

                                                                                                                tttCACGACGCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCGCTTTGATGACCTGAGAGCCTTTAACCGCCATc                     >  2:1449150/1‑140 (MQ=255)

                                                                                                                       acgCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCGCTTTGATGACCTGAGAGCCTTTAACCGCCATCTTgttcg              <  1:1449150/140‑1 (MQ=255)

                                                                                                                        cgCAGGATAACTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCGCTTTGATGACCTGAGAGCCTTTAACCGCCATCTTgttcgc             >  1:1016662/1‑140 (MQ=255)

                                                                                                                                 aCTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCGCTTTGATGACCTGAGAGCCTTTAACCGCCATCTTgttcgccagttcgcc    <  1:309791/140‑1 (MQ=255)

                                                                                                                                 aCTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGAGGGTTGCCATTGCGCCCAGTTTCATCATCGCTTTGATGACCTGAGAGCCTTTAACCGCCATCTTgttcgccagttcgcc    <  2:276880/140‑1 (MQ=255)

                                                                                                                                  cTTTATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCGCTTTGATGACCTGAGAGCCTTTAACCGCCATCTTgttcgccagttcgcca   <  1:257642/140‑1 (MQ=255)

                                                                                                                                   tttATGACCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCGCTTTGATGACCTGAGAGCCTTTAACCGCCATCTTGTTCGCCAGTTCGCCaa  <  1:745651/140‑1 (MQ=255)

AGCAGAGAGGTTTTACCGTGGTCAACGTGACCCATGATGGTCACAACCGGCGCGCGCGGTTCAGCCGCAGCACCCGTGTCACGGTCGCTCATTACCGCCTCTTCCAGCTCGTTTTCACGACGCAGGATAACTTTATGGCCCATCTCTTCAGCAACCAGCTGTGCGGTTTCCTGATCGATAACCTGGTTGATGGTTGCCATTGCGCCCAGTTTCATCATCGCTTTGATGACCTGAGAGCCTTTAACCGCCATCTTGTTCGCCAGTTCGCCAA  >  NC_000913/3314792‑3315062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A