Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	151	87.4	2971636	99.2%	2947862	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,420,861	T→C	V243A (GTC→GCC)	yhdX →	putative ABC transporter membrane subunit YhdX

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,420,861	0	T	C	100.0%	297.8 / NA	83	V243A (GTC→GCC)	yhdX	putative ABC transporter membrane subunit YhdX
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (42/41); total (42/41)

TGGGCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCTGGGATCCAGGCAGTGCCT  >  NC_000913/3420724‑3420997

tGGGCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGccc                                                                                                                                        >  2:604831/1‑140 (MQ=255)

    cTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGc                                                                                                                                    >  1:204491/1‑140 (MQ=255)

       ttCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCACAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCa                                                                                                                                      <  2:231254/135‑1 (MQ=255)

       ttCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCACAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCa                                                                                                                                      >  1:231254/1‑135 (MQ=255)

         ccGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGAGCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTAc                                                                                                                               <  2:275172/140‑1 (MQ=255)

            cTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAg                                                                                                                            >  2:771450/1‑140 (MQ=255)

            cTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAg                                                                                                                            >  1:572044/1‑140 (MQ=255)

            cTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAg                                                                                                                            >  1:761444/1‑140 (MQ=255)

                            cAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCgcgg                                                                                                            <  1:771450/140‑1 (MQ=255)

                             aGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCgcggc                                                                                                           <  2:389131/140‑1 (MQ=255)

                               aTAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGcggcgg                                                                                                         >  1:859528/1‑140 (MQ=255)

                               aTAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGcggcgg                                                                                                         >  1:1278534/1‑140 (MQ=255)

                               aTAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGcggcgg                                                                                                         >  2:1278228/1‑140 (MQ=255)

                               aTAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGcggcgg                                                                                                         >  2:432617/1‑140 (MQ=255)

                                tAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCggg                                                                                                        <  1:700129/140‑1 (MQ=255)

                                tAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCggg                                                                                                        <  2:204491/140‑1 (MQ=255)

                                 aaaGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGa                                                                                                       <  2:761444/140‑1 (MQ=255)

                                       cGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGttt                                                                                                 >  2:117354/1‑140 (MQ=255)

                                        ggACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGtttt                                                                                                <  2:854714/140‑1 (MQ=255)

                                        ggACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGtttt                                                                                                >  2:619402/1‑140 (MQ=255)

                                        ggACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGtttt                                                                                                <  1:619402/140‑1 (MQ=255)

                                         gACAACTGCGCCGCACCTGGTCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTa                                                                                               >  1:1059512/1‑140 (MQ=255)

                                         gACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCgcggc                                                                                                           >  1:392833/1‑128 (MQ=255)

                                         gACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCgcggc                                                                                                           <  2:392833/128‑1 (MQ=255)

                                         gACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCggg                                                                                                        >  2:226508/1‑131 (MQ=255)

                                         gACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCggg                                                                                                        <  1:226508/131‑1 (MQ=255)

                                         gACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTa                                                                                               >  1:1280961/1‑140 (MQ=255)

                                         gACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTa                                                                                               <  1:1188543/140‑1 (MQ=255)

                                          aCAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTaa                                                                                              <  2:213412/140‑1 (MQ=255)

                                             aCTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTc                                                                                           <  1:604831/140‑1 (MQ=255)

                                                 cgccgcACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGa                                                                                       >  1:1217786/1‑140 (MQ=255)

                                                      cACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTgg                                                                                  <  1:596981/140‑1 (MQ=255)

                                                      cACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTgg                                                                                  >  2:1011509/1‑140 (MQ=255)

                                                      cACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTgg                                                                                  <  2:1278534/140‑1 (MQ=255)

                                                            gCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCt                                                                            >  2:1156938/1‑140 (MQ=255)

                                                             ccGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCtt                                                                           <  2:797277/140‑1 (MQ=255)

                                                             ccGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCtt                                                                           <  2:572044/140‑1 (MQ=255)

                                                                aTCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTgg                                                                                  <  1:839157/130‑1 (MQ=255)

                                                                aTCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTgg                                                                                  >  2:839157/1‑130 (MQ=255)

                                                                 tCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACg                                                                       <  1:634520/140‑1 (MQ=255)

                                                                  cgccgcAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGc                                                                      >  2:544959/1‑140 (MQ=255)

                                                                  cgccgcAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGc                                                                      >  1:592709/1‑140 (MQ=255)

                                                                          tgtTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACtt                                                              <  2:1059512/140‑1 (MQ=255)

                                                                          tgtTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACtt                                                              <  1:432617/140‑1 (MQ=255)

                                                                          tgtTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACtt                                                              <  2:1280961/140‑1 (MQ=255)

                                                                               aTCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACtt                                                              >  2:55443/1‑135 (MQ=255)

                                                                               aTCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACtt                                                              <  1:55443/135‑1 (MQ=255)

                                                                               aTCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGt                                                         >  2:379817/1‑140 (MQ=255)

                                                                               aTCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGt                                                         <  1:544959/140‑1 (MQ=255)

                                                                                  aTTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACttt                                                             <  1:83455/133‑1 (MQ=255)

                                                                                  aTTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACttt                                                             >  2:83455/1‑133 (MQ=255)

                                                                                  aTTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTta                                                      <  2:592709/140‑1 (MQ=255)

                                                                                    tGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACtt                                                              <  2:616080/130‑1 (MQ=255)

                                                                                    tGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACtt                                                              >  1:616080/1‑130 (MQ=255)

                                                                                    tGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTtata                                                    >  2:1306184/1‑140 (MQ=255)

                                                                                    tGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTtata                                                    >  1:1277806/1‑140 (MQ=255)

                                                                                    tGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTtata                                                    >  2:1257729/1‑140 (MQ=255)

                                                                                    tGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTtata                                                    >  2:1028644/1‑140 (MQ=255)

                                                                                           ccTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGc                                             >  1:699126/1‑140 (MQ=255)

                                                                                               tACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACCGGCAGCCTTAACGCTGGCACTTTCGGGTTTTACATCTGCAttt                                         >  2:1155777/1‑140 (MQ=255)

                                                                                                aCTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTa                                        >  2:983783/1‑140 (MQ=255)

                                                                                                   ggCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCg                                     <  1:1011509/140‑1 (MQ=255)

                                                                                                     cgcAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCAtt                                          <  1:1270467/133‑1 (MQ=255)

                                                                                                     cgcAATGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCAtt                                          >  2:1270467/1‑133 (MQ=255)

                                                                                                         aTGGCTTTTTGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCgaga                               >  1:1341464/1‑140 (MQ=255)

                                                                                                              tttttGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATc                          <  2:996448/140‑1 (MQ=255)

                                                                                                                tttGGCGCAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCcg                        <  1:1028644/140‑1 (MQ=255)

                                                                                                                    gcgcAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCt                    <  1:379817/140‑1 (MQ=255)

                                                                                                                    gcgcAGCACTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCt                    <  2:699126/140‑1 (MQ=255)

                                                                                                                      gcagcaCTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCTgg                  >  1:519014/1‑140 (MQ=255)

                                                                                                                      gcagcaCTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCTgg                  >  1:743204/1‑140 (MQ=255)

                                                                                                                       cagcaCTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCcgc                       <  1:1031037/134‑1 (MQ=255)

                                                                                                                       cagcaCTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCcgc                       >  2:1031037/1‑134 (MQ=255)

                                                                                                                         gcaCTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCTGGGAt               <  2:1277806/140‑1 (MQ=255)

                                                                                                                          caCTACACTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCTGGGATc              <  2:859528/140‑1 (MQ=255)

                                                                                                                              acacTGGGATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCTGGGATCCAgg          <  1:1278228/140‑1 (MQ=255)

                                                                                                                                    ggATGCCCCAGCCCTGCGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCTGGGATCCAGGCAg       >  1:34470/1‑137 (MQ=255)

                                                                                                                                    ggATGCCCCAGCCCTGCGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCTGGGATCCAGGCAg       <  2:34470/137‑1 (MQ=255)

                                                                                                                                    ggATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCTGGGATCCAGGCAGt      >  2:290865/1‑138 (MQ=255)

                                                                                                                                    ggATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCTGGGATCCAGGCAGt      <  1:290865/138‑1 (MQ=255)

                                                                                                                                    ggATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCTGGGATCCAGGCAGTGc    >  2:1039881/1‑140 (MQ=255)

                                                                                                                                    ggATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCTGGGATCCAGGCAGTGc    >  2:1344372/1‑140 (MQ=255)

                                                                                                                                    ggATGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCTGGGATCCAGGCAGTGc    >  2:238374/1‑140 (MQ=255)

                                                                                                                                      aTGCCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCTGGGATCCAGGCAGTGCCt  <  1:238374/140‑1 (MQ=255)

TGGGCTATTCCGCTTTAATAAAACATACCAGATAAAGACCGGACAACTGCGCCGCACCTGGCCGATCGCCGCAGTGTTGATCATTGGTTTGCCTTTACTGGCGCAATGGCTTTTTGGCGCAGCACTACACTGGGATGTCCCAGCCCTACGAGGCTTTAACTTCCGCGGCGGGATGGTTTTAATTCCTGAACTGGCAGCCTTAACGCTGGCACTTTCGGTTTATACATCTGCATTTATCGCCGAGATTATCCGCGCTGGGATCCAGGCAGTGCCT  >  NC_000913/3420724‑3420997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A