Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,421,841	(G)_5→4	coding (517/1104 nt)	yhdY →	putative ABC transporter membrane subunit YhdY

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,421,837	0	G	.	100.0%	322.3 / NA	75	coding (513/1104 nt)	yhdY	putative ABC transporter membrane subunit YhdY
Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (34/41); total (34/41)

CGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTACCGTTCTGTTTATGTCTTCGGT  >  NC_000913/3421704‑3421971

cGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCggggcgc                                                                                                                                  <  2:1087405/140‑4 (MQ=255)

cGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTATTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTTCATCAGTTGGGATTGCggggcgc                                                                                                                                  >  1:1679279/1‑137 (MQ=255)

  gCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTa                                                                                                                               <  2:238234/140‑1 (MQ=255)

   ccTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTTCTCTTGAGCGGGTTGAAACCCCGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCggggggcttc                                                                                                                               >  2:780404/1‑135 (MQ=255)

   ccTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTTAGCGGGGTGAAACCCGGCAATGGGGGGGGCTGACGCTAACTTTTATTATTGCATTAGTTTGGGTTTC‑GGGGCGCTAc                                                                                                                              >  2:447209/1‑140 (MQ=255)

   ccTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGGTGACGCTAACTTTTATTATTGCATCAGTTGGGGTTGC‑GGGGCGCTAc                                                                                                                              >  2:1246976/1‑140 (MQ=255)

   ccTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTAc                                                                                                                              >  1:1052864/1‑140 (MQ=255)

   ccTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTAc                                                                                                                              >  1:928160/1‑140 (MQ=255)

    cTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTAcc                                                                                                                             <  2:1347576/140‑1 (MQ=255)

     tGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGGTGACGCTAACTTTAATTATTTCATCAGTTGGGATTGC‑GGGGCGCTACCg                                                                                                                            >  1:572686/1‑140 (MQ=255)

     tGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCg                                                                                                                            >  2:376338/1‑140 (MQ=255)

     tGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCg                                                                                                                            <  1:552192/140‑1 (MQ=255)

       ggCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTTCTCTTGAGCGGGGTGAAACCCCGCAATGGGGGGGGGTGACGCTAACTTTTATTTTTGCATTAGTTTGGGTTGCGGGGG‑GCTACCGTg                                                                                                                          >  2:410753/1‑140 (MQ=255)

       ggCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTg                                                                                                                          <  2:1411506/140‑1 (MQ=255)

       ggCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTg                                                                                                                          <  1:1286304/140‑1 (MQ=255)

       ggCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTg                                                                                                                          <  1:376338/140‑1 (MQ=255)

        gCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTgg                                                                                                                         <  2:650643/140‑1 (MQ=255)

            tGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTTCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGGTGGCGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGG‑GCTACCGggggggg                                                                                                                     >  2:752636/1‑139 (MQ=255)

            tGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTgtgg                                                                                                                       <  2:1040853/138‑4 (MQ=255)

            tGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTgtgg                                                                                                                       >  1:1040853/1‑138 (MQ=255)

            tGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGa                                                                                                                     <  2:732633/140‑1 (MQ=255)

             gATTTACCCACTGATTGTCTGGTGGCTGATGTATGGTGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCggg                                                                                                                                      >  1:1004326/1‑123 (MQ=255)

             gATTTACCCACTGATTGTCTGGTGGCTGATGTATGGTGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCggg                                                                                                                                      <  2:1004326/123‑1 (MQ=255)

                 tACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTa                                                                                                                <  2:818208/140‑1 (MQ=255)

                        tGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCCGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑AGGGCGCTACCGTGGGGGGTCTTACTGGGGt                                                                                                         >  2:1049204/1‑140 (MQ=255)

                          aTTGTCTGGTGGCTGATGTATGGCGGTTTTTTTTCTCTTTAACGGGGTGAAAACCCGCAATGGGGCGGGGTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGGCACCCGGGGGGATCTTACCGGCGTTa                                                                                                       >  2:217437/1‑140 (MQ=255)

                          aTTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTTAGCGGGTTGAAACCCGGCAATGGGGGGGGCTGACGCTTACTTTTATTATTGCATCAGTTTGGGTTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGttt                                                                                                       >  2:1489507/1‑139 (MQ=255)

                          aTTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTggggg                                                                                                                      >  1:50913/1‑125 (MQ=255)

                          aTTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTggggg                                                                                                                      <  2:50913/125‑1 (MQ=255)

                             gTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGt                                                                                                    >  1:691466/1‑140 (MQ=255)

                               cTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTcg                                                                                                  <  2:605826/140‑1 (MQ=255)

                                tggtggCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATGTTACTGGCGTTAGGTcgc                                                                                                 <  1:1524/140‑1 (MQ=255)

                                 ggtggCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTcgcc                                                                                                <  1:1489507/140‑1 (MQ=255)

                                  gtggCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGGTTGC‑GGGGCGCTATCGTGGGGGATCTTACTGGCGGTAGGTcgccg                                                                                               >  2:732839/1‑140 (MQ=255)

                                  gtggCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTcgccg                                                                                               <  1:52670/140‑1 (MQ=255)

                                    ggCTGATGTATGGCGGTTTTTTTGCTCTTGAGGGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAAATTTTATTATTGCATCAGTTGGGATTGC‑AGGGCGCTACCGTGGGGGGTCTTACTGGCGTTAGGTCGCCGCt                                                                                             >  1:1116746/1‑140 (MQ=255)

                                    ggCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGGTTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTcgccgcc                                                                                             >  2:225326/1‑139 (MQ=255)

                                    ggCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCt                                                                                             <  1:410753/140‑1 (MQ=255)

                                        gATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCa                                                                                         <  1:1544898/140‑1 (MQ=255)

                                          tGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCa                                                                                         <  1:1067143/138‑1 (MQ=255)

                                          tGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCa                                                                                         >  2:1067143/1‑138 (MQ=255)

                                            tATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGGTCTTACTGGCGTTAGGTCGCCGCTCCCATATg                                                                                     >  1:720850/1‑140 (MQ=255)

                                            tATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATg                                                                                     <  2:720850/140‑1 (MQ=255)

                                              tGGCGGTTTTTTTGCTCTTGAGCGGGGTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGGGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGcc                                                                                   >  2:1368623/1‑140 (MQ=255)

                                               ggCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGGGGGCTGGCGCTAACTTTTATTATTGCATCAGTTGGGGTTGC‑GGGGCGCTACCGTGGGGGGTCTTACTGGCGTTAGGTCGCCGCTCCCCTATGccc                                                                                  >  2:200769/1‑139 (MQ=255)

                                               ggCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCg                                                                                  >  1:946973/1‑140 (MQ=255)

                                               ggCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCg                                                                                  >  1:1497019/1‑140 (MQ=255)

                                                gCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGGTCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGa                                                                                 >  1:455778/1‑140 (MQ=255)

                                                gCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGa                                                                                 <  1:1246976/140‑1 (MQ=255)

                                                gCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGa                                                                                 <  1:362866/140‑1 (MQ=255)

                                                   gTTTTTTTGCTCCTGAGCGGGTTGAAACCCGGCAATAGGGCGGGCCGACCCCAACTTTAATTATTGCATCAGTTGGGATTG‑GGGGGCGCTGACAGGGGGGATCTTAATTGCGTTGGGCCCCCGCTCCCAAATGCCGCttt                                                                              >  2:362866/1‑139 (MQ=255)

                                                    tttttttGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATtgt                                                                             <  1:217437/140‑1 (MQ=255)

                                                    tttttttGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATtgt                                                                             >  2:596943/1‑140 (MQ=255)

                                                     ttttttGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATtgtg                                                                            <  2:1052864/140‑1 (MQ=255)

                                                               ttGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTAt                                                                  <  2:928160/140‑1 (MQ=255)

                                                                tGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATc                                                                 >  1:1055909/1‑140 (MQ=255)

                                                                tGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATc                                                                 >  2:739812/1‑140 (MQ=255)

                                                                   gCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGt                                                              <  1:752636/140‑1 (MQ=255)

                                                                       gTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCa                                                            >  1:1614103/1‑138 (MQ=255)

                                                                       gTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCa                                                            <  2:1614103/138‑1 (MQ=255)

                                                                                 ggCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGGTTGAGCGTATCTTATCGGTCATTTTTATCGAAt                                                >  2:1605274/1‑140 (MQ=255)

                                                                                 ggCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAAt                                                >  2:578534/1‑140 (MQ=255)

                                                                                        gggcgggcTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGgcg                                         <  2:455778/140‑1 (MQ=255)

                                                                                         ggcgggcTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGgcgc                                        >  2:1332604/1‑140 (MQ=255)

                                                                                          gcgggcTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGcgcg                                       <  2:946973/140‑1 (MQ=255)

                                                                                             ggcTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGcgcg                                       >  1:863936/1‑137 (MQ=255)

                                                                                             ggcTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGcgcg                                       <  2:863936/137‑1 (MQ=255)

                                                                                             ggcTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCgcggcg                                    <  1:739812/140‑1 (MQ=255)

                                                                                             ggcTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCgcggcg                                    >  2:1443246/1‑140 (MQ=255)

                                                                                               cTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTg                                  <  2:691466/140‑1 (MQ=255)

                                                                                               cTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTg                                  <  1:578534/140‑1 (MQ=255)

                                                                                                   cGCTAACTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGc                              >  1:1275202/1‑140 (MQ=255)

                                                                                                       aaCTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGAt                          <  1:596943/140‑1 (MQ=255)

                                                                                                        aCTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGAtt                         >  2:227974/1‑140 (MQ=255)

                                                                                                        aCTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGAtt                         >  2:1096256/1‑140 (MQ=255)

                                                                                                         cTTTAATTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTa                        <  1:1200350/140‑1 (MQ=255)

                                                                                                             aaTTATTGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTACCGt                    <  1:200769/140‑1 (MQ=255)

                                                                                                              attattGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTACCGtt                   <  1:1148957/140‑1 (MQ=255)

                                                                                                              attattGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTACCGtt                   <  1:153588/140‑1 (MQ=255)

                                                                                                              attattGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTACCGtt                   <  1:227974/140‑1 (MQ=255)

                                                                                                                  ttGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTa                        <  1:629523/131‑1 (MQ=255)

                                                                                                                  ttGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTa                        >  2:629523/1‑131 (MQ=255)

                                                                                                                  ttGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTACCGTTCTGt               >  1:65996/1‑140 (MQ=255)

                                                                                                                  ttGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTACCGTTCTGt               >  1:884825/1‑140 (MQ=255)

                                                                                                                  ttGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTACCGTTCTGt               >  2:734753/1‑140 (MQ=255)

                                                                                                                  ttGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTACCGTTCTGt               >  1:1358336/1‑140 (MQ=255)

                                                                                                                   tGCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTACCGTTCTGtt              >  2:1096544/1‑140 (MQ=255)

                                                                                                                    gCATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTACCGTTCTGttt             >  1:1318138/1‑140 (MQ=255)

                                                                                                                     cATCAGTTGGGATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTACCGTTCTGTTTa            >  1:840232/1‑140 (MQ=255)

                                                                                                                               gATTGC‑GGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTACCGTTCTGTTTATGTCTTCGGt  <  2:65996/140‑1 (MQ=255)

                                                                                                                                aTTGC‑GGGGCACTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTACCGTTCTGttt             >  1:221648/1‑128 (MQ=255)

                                                                                                                                aTTGC‑GGGGCACTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTACCGTTCTGttt             <  2:221648/128‑1 (MQ=255)

CGGCCTGGGCGGTGATTTACCCACTGATTGTCTGGTGGCTGATGTATGGCGGTTTTTTTGCTCTTGAGCGGGTTGAAACCCGGCAATGGGGCGGGCTGACGCTAACTTTAATTATTGCATCAGTTGGGATTGCGGGGGCGCTACCGTGGGGGATCTTACTGGCGTTAGGTCGCCGCTCCCATATGCCGATTGTGCGTATCTTATCGGTCATTTTTATCGAATTCTGGCGCGGCGTGCCGCTGATTACCGTTCTGTTTATGTCTTCGGT  >  NC_000913/3421704‑3421971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A