Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	151	87.4	2971636	99.2%	2947862	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,623,834	G→A	intergenic (+52/‑544)	yhhH → / → yhhI	PF15631 family protein YhhH/putative transposase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,623,834	0	G	A	99.2%	437.6 / ‑4.7	125	intergenic (+52/‑544)	yhhH/yhhI	PF15631 family protein YhhH/putative transposase
Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (52/72); total (53/72)
Fisher's exact test for biased strand distribution p-value = 4.24e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.76e-01

Only 100 of 125 total aligned reads displayed.

TCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAA  >  NC_000913/3623699‑3623967

tCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTc                                                                                                                                   <  1:1091673/140‑1 (MQ=255)

tCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTc                                                                                                                                   >  1:857561/1‑140 (MQ=255)

tCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTc                                                                                                                                   >  1:242873/1‑140 (MQ=255)

tCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTc                                                                                                                                   >  2:788092/1‑140 (MQ=255)

tCAGACCAAACTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTc                                                                                                                                   >  1:1169252/1‑140 (MQ=255)

  aGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGTAGAGTAGGTGGAGAACTCCa                                                                                                                                 >  1:1418876/1‑140 (MQ=255)

  aGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCa                                                                                                                                 >  1:691856/1‑140 (MQ=255)

  aGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCa                                                                                                                                 <  1:308706/140‑1 (MQ=255)

  aGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCa                                                                                                                                 <  2:857561/140‑1 (MQ=255)

  aGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATGTTGGCCACGGAAAATAAGTATGTAAGGATAATGAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCa                                                                                                                                 >  2:1385150/1‑140 (MQ=255)

          ttGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCa                                                                                                                         >  1:550748/1‑140 (MQ=255)

          ttGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCa                                                                                                                         <  1:554079/140‑1 (MQ=255)

          ttGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCa                                                                                                                         <  1:818989/140‑1 (MQ=255)

              tggtggGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACg                                                                                                                     >  1:378192/1‑140 (MQ=255)

               ggtggGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGa                                                                                                                    <  2:481388/140‑1 (MQ=255)

               ggtggGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGa                                                                                                                    <  1:202338/140‑1 (MQ=255)

                gtggGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGAt                                                                                                                   >  1:1025176/1‑140 (MQ=255)

                gtggGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGAt                                                                                                                   >  2:221972/1‑140 (MQ=255)

                   gggTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGa                                                                                                                <  2:691856/140‑1 (MQ=255)

                       ttttATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGaaaaa                                                                                                            >  2:60556/1‑140 (MQ=255)

                        tttATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAg                                                                                                           >  2:482570/1‑140 (MQ=255)

                          tattatAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGAt                                                                                                         <  2:214747/140‑1 (MQ=255)

                          tattatAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGAt                                                                                                         <  1:1449651/140‑1 (MQ=255)

                            ttatAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAg                                                                                                       <  2:378192/140‑1 (MQ=255)

                               taGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCt                                                                                                    <  2:375433/140‑1 (MQ=255)

                                    aTAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATa                                                                                                        <  1:1117742/131‑1 (MQ=255)

                                    aTAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATg                                                                                               <  2:1025176/140‑1 (MQ=255)

                                    aTAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATg                                                                                               <  1:119397/140‑1 (MQ=255)

                                     tAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATgg                                                                                              >  1:1160588/1‑140 (MQ=255)

                                      aGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGACGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGa                                                                                             <  2:1029924/140‑1 (MQ=255)

                                       ggCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGAt                                                                                                         <  1:856104/127‑1 (MQ=255)

                                       ggCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGAt                                                                                                         >  2:856104/1‑127 (MQ=255)

                                       ggCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAg                                                                                            >  1:1200949/1‑140 (MQ=255)

                                              atgatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTg                                                                                     <  1:774101/140‑1 (MQ=255)

                                                gatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCa                                                                                   <  2:762361/140‑1 (MQ=255)

                                                gatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCa                                                                                   <  2:1475696/140‑1 (MQ=255)

                                                gatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCa                                                                                   <  2:100335/140‑1 (MQ=255)

                                                gatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCa                                                                                   <  1:332439/140‑1 (MQ=255)

                                                gatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCa                                                                                   <  2:523754/140‑1 (MQ=255)

                                                gatgGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCa                                                                                   >  1:1222641/1‑140 (MQ=255)

                                                    ggAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGTAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGt                                                                               <  2:1418876/140‑1 (MQ=255)

                                                        aaTTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCaaa                                                                           >  1:626484/1‑140 (MQ=255)

                                                        aaTTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCaaa                                                                           >  2:1371072/1‑140 (MQ=255)

                                                          ttCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAata                                                                         >  1:1353134/1‑140 (MQ=255)

                                                          ttCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAata                                                                         <  2:1132193/140‑1 (MQ=255)

                                                           tCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCa                                                                                   >  2:402145/1‑129 (MQ=255)

                                                           tCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCa                                                                                   <  1:402145/129‑1 (MQ=255)

                                                           tCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAatac                                                                        >  2:120078/1‑140 (MQ=255)

                                                            cTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAataca                                                                       <  2:1357910/140‑1 (MQ=255)

                                                             tGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAatacat                                                                      <  2:750107/140‑1 (MQ=255)

                                                               aaTTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAatacatac                                                                    <  1:630963/140‑1 (MQ=255)

                                                                    tGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAataca                                                                       <  2:623658/132‑1 (MQ=255)

                                                                    tGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAataca                                                                       >  1:623658/1‑132 (MQ=255)

                                                                    tGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCagaa                                                               >  1:787970/1‑140 (MQ=255)

                                                                    tGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCagaa                                                               >  1:432074/1‑140 (MQ=255)

                                                                        cACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCagaaaaga                                                           <  2:432074/140‑1 (MQ=255)

                                                                        cACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCagaaaaga                                                           <  1:1371072/140‑1 (MQ=255)

                                                                          cGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCagaaaagaaa                                                         <  2:1222641/140‑1 (MQ=255)

                                                                          cGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCagaaaagaaa                                                         <  2:128360/140‑1 (MQ=255)

                                                                          cGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCagaaaagaaa                                                         <  1:1215525/140‑1 (MQ=255)

                                                                            gAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAgg                                                       <  2:1169252/140‑1 (MQ=255)

                                                                            gAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAgg                                                       <  2:900580/140‑1 (MQ=255)

                                                                            gAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAgg                                                       <  1:752692/140‑1 (MQ=255)

                                                                            gAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCCTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAgg                                                       <  2:1163213/140‑1 (MQ=255)

                                                                             aaaaTAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGc                                                      <  2:787970/140‑1 (MQ=255)

                                                                                 tAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGt                                                  <  1:788092/140‑1 (MQ=255)

                                                                                    gTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAAAAAGGCAAGTaaa                                               <  2:242873/140‑1 (MQ=255)

                                                                                     tATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGc                                                      >  2:1372620/1‑132 (MQ=255)

                                                                                     tATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGc                                                      <  1:791146/132‑1 (MQ=255)

                                                                                     tATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGc                                                      >  2:791146/1‑132 (MQ=255)

                                                                                     tATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGc                                                      <  1:1372620/132‑1 (MQ=255)

                                                                                       tGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAagag                                            >  1:722835/1‑140 (MQ=255)

                                                                                        gTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAATAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGt                                           <  2:1353134/140‑1 (MQ=255)

                                                                                        gTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGGGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGt                                           <  2:1160588/140‑1 (MQ=255)

                                                                                        gTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGt                                           <  2:686739/140‑1 (MQ=255)

                                                                                        gTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGt                                           <  1:1064330/140‑1 (MQ=255)

                                                                                        gTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGt                                           <  1:1158460/140‑1 (MQ=255)

                                                                                        gTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGt                                           <  1:501407/140‑1 (MQ=255)

                                                                                        gTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGt                                           <  1:963490/140‑1 (MQ=255)

                                                                                            ggATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGt                                                  <  1:566178/129‑1 (MQ=255)

                                                                                            ggATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGt                                                  >  2:566178/1‑129 (MQ=255)

                                                                                             gATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGt                                      <  1:1319937/140‑1 (MQ=255)

                                                                                                aaTCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTta                                   >  1:676205/1‑140 (MQ=255)

                                                                                                aaTCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTta                                   <  2:528259/140‑1 (MQ=255)

                                                                                                 aTCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTa                                                 >  2:418750/1‑125 (MQ=255)

                                                                                                 aTCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTa                                                 <  1:418750/125‑1 (MQ=255)

                                                                                                 aTCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTtat                                  >  2:779133/1‑140 (MQ=255)

                                                                                                      aCATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATataat                             >  2:1023135/1‑140 (MQ=255)

                                                                                                       cATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATg                                        <  1:458960/128‑1 (MQ=255)

                                                                                                       cATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTta                                   >  1:1361031/1‑133 (MQ=255)

                                                                                                       cATCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATataata                            >  2:1202420/1‑140 (MQ=255)

                                                                                                        aTCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATAtaataa                           >  2:455128/1‑140 (MQ=255)

                                                                                                        aTCGTGTGCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATAtaataa                           >  2:92574/1‑140 (MQ=255)

                                                                                                            tgtgCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATTAATGt                       >  2:1317622/1‑140 (MQ=255)

                                                                                                              tgCGCTGATGGCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTaa                     >  2:1213354/1‑140 (MQ=255)

                                                                                                                        gCAGAGTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAat           >  2:393916/1‑140 (MQ=255)

                                                                                                                           gagTAGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAatgat        >  1:203711/1‑140 (MQ=255)

                                                                                                                               aGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGa                   <  2:618342/125‑1 (MQ=255)

                                                                                                                               aGGTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGa                   >  1:618342/1‑125 (MQ=255)

                                                                                                                                 gTGGAGAACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGaa  <  2:392118/140‑1 (MQ=255)

TCAGACCAAATTGCTGGTGGGGTTTTTATTATAGAAATAGGCAAAAATGATGGGAGAATTCTGAATTTTGGCCACGGAAAATAAGTATGTAAGGATAATCAAACATCGTGTGCGCTGATGGCAGAGTAGGTGGAGGACTCCAGACAGTCAAACGATAGAAAAAGATAGCCTTTATGGAGGTTCCTGCAATGTCAAATACATACCAGAAAAGAAAGGCAAGTAAAGAGTATGGTTTATATAATAAATGTAAGAAACTAAATGATGATGAA  >  NC_000913/3623699‑3623967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A