Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,865,527 A→G D249D (GAT→GAC)  yidE ← putative transport protein YidE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,865,5270AG100.0% 407.9 / NA 115D249D (GAT→GAC) yidEputative transport protein YidE
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (58/57);  total (58/57)

Only 100 of 115 total aligned reads displayed.

CACACGCTCGACGCGCAAATCAGTGCCTTTCGTGGACAGCGAAGTATCGACCTCCTGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTATCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAACGCGAATATTGATAGTC  >  NC_000913/3865392‑3865659
                                                                                                                                       |                                                                                                                                    
cacaCGCTCGACGCGCAAATCAGTGCCTTTCGTGGACAGCGAAGTATCGACCTCCTGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCACCCAGTTGGATAATGGTGTCTg                                                                                                                                  >  2:520203/1‑140 (MQ=255)
       tCGACGCGCAAATCAGTGCCTTTCGTGGACAGCGAAGTATCGACCTCCTGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAgg                                                                                                                           <  2:130038/140‑1 (MQ=255)
       tCGACGCGCAAATCAGTGCCTTTCGTGGACAGCGAAGTATCGACCTCCTGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAgg                                                                                                                           <  1:1246054/140‑1 (MQ=255)
       tCGACGCGCAAATCAGTGCCTTTCGTGGACAGCGAAGTATCGACCTCCTGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCACCCAGTTGGATAATGGTGTCTGGCGAAgg                                                                                                                           <  1:969134/140‑1 (MQ=255)
                        gCCTTTCGTGGACAGCGAAGTATCGACCTCCTGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTttctt                                                                                                          <  1:773624/140‑1 (MQ=255)
                                       cGAAGTATCGACCTCCTGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGAcgcg                                                                                           >  2:576502/1‑140 (MQ=255)
                                       cGAAGTATCGACCTCCTGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGAcgcg                                                                                           >  2:1371381/1‑140 (MQ=255)
                                       cGAAGTATCGACCTCCTGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGAcgcg                                                                                           >  2:1295203/1‑140 (MQ=255)
                                       cGAAGTATCGACCTCCTGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGAcgcg                                                                                           >  1:49585/1‑140 (MQ=255)
                                       cGAAGTATCGACCTCCTGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGAcgcg                                                                                           >  2:1252717/1‑140 (MQ=255)
                                        gAAGTATCGACCTCCTGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGa                                                                                          <  1:576502/140‑1 (MQ=255)
                                                 agctcctGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAAt                                                                                 >  1:31219/3‑140 (MQ=255)
                                                      ctGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGt                                                                            <  1:571208/140‑1 (MQ=255)
                                                      ctGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGt                                                                            >  2:680797/1‑140 (MQ=255)
                                                      ctGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGt                                                                            >  1:66539/1‑140 (MQ=255)
                                                      ctGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGt                                                                            >  2:618942/1‑140 (MQ=255)
                                                        gACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCg                                                                          <  1:618942/140‑1 (MQ=255)
                                                           cAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCg                                                                       <  1:1069102/140‑1 (MQ=255)
                                                            aaTCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTc                                                                           >  2:1109916/1‑135 (MQ=255)
                                                            aaTCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTc                                                                           <  1:1109916/135‑1 (MQ=255)
                                                             aTCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCg                                                                          <  1:1196661/135‑1 (MQ=255)
                                                             aTCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCg                                                                          >  2:1196661/1‑135 (MQ=255)
                                                              tCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTg                                                                    >  1:1275248/1‑140 (MQ=255)
                                                                aCCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGt                                                                            >  2:628401/1‑130 (MQ=255)
                                                                aCCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGt                                                                            <  1:628401/130‑1 (MQ=255)
                                                                aCCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTgag                                                                  >  1:420808/1‑140 (MQ=255)
                                                                  cAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGaa                                                                <  2:754837/140‑1 (MQ=255)
                                                                   aGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAAt                                                               <  2:1031664/140‑1 (MQ=255)
                                                                    gTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATc                                                              >  2:1123901/1‑140 (MQ=255)
                                                                    gTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATc                                                              <  1:1123901/140‑1 (MQ=255)
                                                                     ttGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCg                                                             >  1:160802/1‑140 (MQ=255)
                                                                       gcgcATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGt                                                           <  2:532499/140‑1 (MQ=255)
                                                                       gcgcATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTCGAGAATCGGt                                                           <  2:750912/140‑1 (MQ=255)
                                                                        cgcATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGaa                                                                <  1:609231/134‑1 (MQ=255)
                                                                        cgcATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGaa                                                                >  2:609231/1‑134 (MQ=255)
                                                                        cgcATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGt                                                           >  2:686120/1‑139 (MQ=255)
                                                                        cgcATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGt                                                           <  1:686120/139‑1 (MQ=255)
                                                                        cgcATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTa                                                          >  2:786745/1‑140 (MQ=255)
                                                                        cgcATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTa                                                          >  1:339494/1‑140 (MQ=255)
                                                                          cATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACa                                                        >  2:936637/1‑140 (MQ=255)
                                                                          cATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACa                                                        >  1:1071822/1‑140 (MQ=255)
                                                                               tGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCttt                                                   >  1:895004/1‑140 (MQ=255)
                                                                                gTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTa                                                  <  1:969470/140‑1 (MQ=255)
                                                                                   aaTCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATg                                               >  2:1194507/1‑140 (MQ=255)
                                                                                    aTCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAAt                                                               <  1:345250/123‑1 (MQ=255)
                                                                                    aTCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAAt                                                               >  2:345250/1‑123 (MQ=255)
                                                                                    aTCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATgg                                              <  2:1276044/140‑1 (MQ=255)
                                                                                    aTCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATgg                                              <  1:936637/140‑1 (MQ=255)
                                                                                     tCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGc                                             >  1:1401813/1‑140 (MQ=255)
                                                                                       cGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTa                                           >  2:1027841/1‑140 (MQ=255)
                                                                                       cGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTa                                           >  2:968060/1‑140 (MQ=255)
                                                                                         ctggctgACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGt                                                           <  1:803317/122‑1 (MQ=255)
                                                                                         ctggctgACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGt                                                           >  2:803317/1‑122 (MQ=255)
                                                                                         ctggctgACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCt                                            <  1:90413/137‑1 (MQ=255)
                                                                                         ctggctgACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCt                                            >  2:90413/1‑137 (MQ=255)
                                                                                         ctggctgACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTaaa                                         >  2:472089/1‑140 (MQ=255)
                                                                                         ctggctgACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTaaa                                         >  2:743639/1‑140 (MQ=255)
                                                                                         ctggctgACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTaaa                                         >  1:632280/1‑140 (MQ=255)
                                                                                         ctggctgACCCACCAGATGCAGCAAATCGCACAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACa                                                        >  1:1326602/1‑125 (MQ=255)
                                                                                             ctgACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCAt                                     >  2:279256/1‑140 (MQ=255)
                                                                                             ctgACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCAt                                     <  2:1278765/140‑1 (MQ=255)
                                                                                              tgACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTGTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATg                                    <  1:657284/140‑1 (MQ=255)
                                                                                              tgACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATg                                    <  1:1097560/140‑1 (MQ=255)
                                                                                              tgACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATg                                    <  1:1252717/140‑1 (MQ=255)
                                                                                              tgACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATg                                    <  1:968060/140‑1 (MQ=255)
                                                                                              tgACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATg                                    <  2:339494/140‑1 (MQ=255)
                                                                                                aCCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCttt                                                   >  2:943892/1‑123 (MQ=255)
                                                                                                  ccaccaGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAgg                                <  2:429100/140‑1 (MQ=255)
                                                                                                      caGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAg                            >  1:929314/1‑140 (MQ=255)
                                                                                                      caGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAg                            >  2:336734/1‑140 (MQ=255)
                                                                                                      caGATGCAGCAAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAg                            >  1:639271/1‑140 (MQ=255)
                                                                                                           gcagcaAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATg                                    >  1:922475/1‑127 (MQ=255)
                                                                                                           gcagcaAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATg                                    <  2:922475/127‑1 (MQ=255)
                                                                                                            cagcaAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGtt                        >  1:424428/1‑138 (MQ=255)
                                                                                                            cagcaAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGtt                        <  2:424428/138‑1 (MQ=255)
                                                                                                            cagcaAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTtct                      >  2:1441234/1‑140 (MQ=255)
                                                                                                              gcaAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCa                    >  1:537810/1‑140 (MQ=255)
                                                                                                               caAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCaa                   >  1:952532/1‑140 (MQ=255)
                                                                                                               caAATCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGATTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCaa                   >  2:60351/1‑140 (MQ=255)
                                                                                                                aaaTCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAAc                  >  2:131912/1‑140 (MQ=255)
                                                                                                                 aaTCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAAcg                 <  2:1071822/140‑1 (MQ=255)
                                                                                                                 aaTCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAAcg                 <  1:279256/140‑1 (MQ=255)
                                                                                                                 aaTCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAAcg                 <  1:1441234/140‑1 (MQ=255)
                                                                                                                 aaTCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAAcg                 <  1:131912/140‑1 (MQ=255)
                                                                                                                 aaTCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAAcg                 <  2:190211/140‑1 (MQ=255)
                                                                                                                   tCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAAcgcg               <  1:333180/140‑1 (MQ=255)
                                                                                                                   tCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAAcgcg               <  2:1127740/140‑1 (MQ=255)
                                                                                                                   tCGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAAcgcg               <  1:336734/140‑1 (MQ=255)
                                                                                                                    cGCCCAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAACGCGa              >  1:113674/1‑140 (MQ=255)
                                                                                                                      cccAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAACGCGAat            <  2:292808/140‑1 (MQ=255)
                                                                                                                      cccAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAACGCGAat            <  2:952532/140‑1 (MQ=255)
                                                                                                                      cccAGTTGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAACGCGAat            <  1:1371381/140‑1 (MQ=255)
                                                                                                                           ttGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAACGCGAATATTGa       <  2:160802/140‑1 (MQ=255)
                                                                                                                           ttGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAACGCGAATATTGa       <  1:1295203/140‑1 (MQ=255)
                                                                                                                           ttGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAACGCGAATATTGa       <  1:1027841/140‑1 (MQ=255)
                                                                                                                           ttGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAACGCGAATATTGa       <  1:1444580/140‑1 (MQ=255)
                                                                                                                           ttGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAACGCGAATATTGa       <  2:31219/140‑1 (MQ=255)
                                                                                                                           ttGGATAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAACGCGAATATTGa       <  2:1275248/140‑1 (MQ=255)
                                                                                                                             ggATAATGGTGTCTGGCGAAGGAACTTTTAGGGATTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAACGCGAATATTGATa     <  1:60351/140‑1 (MQ=255)
                                                                                                                                tAATGGTGTCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAACGCGAATATTGATAGTc  >  2:113661/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                    
CACACGCTCGACGCGCAAATCAGTGCCTTTCGTGGACAGCGAAGTATCGACCTCCTGACCAATCACCAGTTGCGCATTATGTAAATCCGCTGGCTGACCCACCAGATGCAGCAAATCGCCCAGTTGGATAATGGTATCTGGCGAAGGAACTTTTAGGGTTTCTTCGCGTTTCAGACGCGAGCAGATAATTTTGTCGCCGTTGAGAATCGGTACATCTTTAATGGCTAAATCATGCAGGTTAGGGTTCTCAACGCGAATATTGATAGTC  >  NC_000913/3865392‑3865659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A