Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	151	87.4	2971636	99.2%	2947862	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,898,577	G→A	G186S (GGC→AGC)	cbrC →	UPF0167 family colicin E2 tolerance protein CbrC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,898,577	0	G	A	100.0%	287.1 / NA	80	G186S (GGC→AGC)	cbrC	UPF0167 family colicin E2 tolerance protein CbrC
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (37/43); total (37/43)

ATATAAAAGATCGCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAG  >  NC_000913/3898440‑3898708

atatAAAAGATCGCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGc                                                                                                                                   >  1:795300/1‑140 (MQ=255)

atatAAAAGATCGCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGc                                                                                                                                   >  1:5638/1‑140 (MQ=255)

 tataAAAGATCGCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTgcagca                                                                                                                                  <  2:931368/140‑1 (MQ=255)

 tataAAAGATCGCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTgcagca                                                                                                                                  >  2:200377/1‑140 (MQ=255)

 tataAAAGATCGCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTgcagca                                                                                                                                  >  1:315783/1‑140 (MQ=255)

   taAAAGATCGCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAg                                                                                                                                <  2:5638/140‑1 (MQ=255)

          tCGCCTCGATGAATTTGTCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGAc                                                                                                                         <  2:873279/140‑1 (MQ=255)

          tCGCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGGAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGAc                                                                                                                         >  2:1331345/1‑140 (MQ=255)

           cGCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTgcagca                                                                                                                                  >  1:1110483/1‑130 (MQ=255)

           cGCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTgcagca                                                                                                                                  <  2:1110483/130‑1 (MQ=255)

           cGCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACt                                                                                                                        >  2:443714/1‑140 (MQ=255)

           cGCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACt                                                                                                                        >  2:119863/1‑140 (MQ=255)

           cGCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACt                                                                                                                        >  1:218736/1‑140 (MQ=255)

           cGCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACt                                                                                                                        >  2:184120/1‑140 (MQ=255)

           cGCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACt                                                                                                                        >  1:1365206/1‑140 (MQ=255)

           cGCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACt                                                                                                                        >  2:172527/1‑140 (MQ=255)

            gCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACtg                                                                                                                       <  2:1365206/140‑1 (MQ=255)

            gCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACtg                                                                                                                       <  1:342539/140‑1 (MQ=255)

                cGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTggg                                                                                                                   <  2:617798/140‑1 (MQ=255)

                 gATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTgggg                                                                                                                  <  2:795300/140‑1 (MQ=255)

                  aTGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGt                                                                                                                 >  2:91288/1‑140 (MQ=255)

                       tttGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGAttt                                                                                                            >  2:1189358/1‑140 (MQ=255)

                          gCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTc                                                                                                         >  2:1262493/1‑140 (MQ=255)

                          gCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTc                                                                                                         >  2:372528/1‑140 (MQ=255)

                           ccAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCg                                                                                                        <  1:372528/140‑1 (MQ=255)

                             aaCCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTa                                                                                                      <  2:899172/140‑1 (MQ=255)

                             aaCCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTa                                                                                                      <  2:315783/140‑1 (MQ=255)

                             aaCCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTa                                                                                                      <  1:119863/140‑1 (MQ=255)

                              aCCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAg                                                                                                     >  1:272466/1‑140 (MQ=255)

                              aCCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAg                                                                                                     <  1:91288/140‑1 (MQ=255)

                               ccTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGt                                                                                                    >  1:1304263/1‑140 (MQ=255)

                                     agaagaTTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTa                                                                                                      >  1:1408755/1‑132 (MQ=255)

                                     agaagaTTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTa                                                                                                      <  2:1408755/132‑1 (MQ=255)

                                      gaagaTTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTaa                                                                                             <  1:1262493/140‑1 (MQ=255)

                                      gaagaTTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTaa                                                                                             <  2:1135637/140‑1 (MQ=255)

                                          aTTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTa                                                                                                      <  2:1148179/127‑1 (MQ=255)

                                          aTTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTa                                                                                                      >  1:1148179/1‑127 (MQ=255)

                                          aTTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAaataa                                                                                         >  1:916727/1‑140 (MQ=255)

                                          aTTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAaataa                                                                                         >  2:770444/1‑140 (MQ=255)

                                          aTTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAaataa                                                                                         >  2:615102/1‑140 (MQ=255)

                                           ttGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAaataat                                                                                        <  2:218736/140‑1 (MQ=255)

                                                  aaTTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACa                                                                                 <  2:1162327/140‑1 (MQ=255)

                                                     ttCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGc                                                                              <  2:916727/140‑1 (MQ=255)

                                                       cGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCg                                                                            <  1:200377/140‑1 (MQ=255)

                                                          tATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATgaga                                                                                    >  1:513636/1‑129 (MQ=255)

                                                          tATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATgaga                                                                                    >  1:333833/1‑129 (MQ=255)

                                                          tATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATgaga                                                                                    <  2:513636/129‑1 (MQ=255)

                                                          tATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATgaga                                                                                    <  2:333833/129‑1 (MQ=255)

                                                            ttAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCg                                                                       <  1:480495/140‑1 (MQ=255)

                                                            ttAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCg                                                                       <  1:770444/140‑1 (MQ=255)

                                                             tAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGt                                                                      <  1:184120/140‑1 (MQ=255)

                                                              aGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTa                                                                     <  1:1400160/140‑1 (MQ=255)

                                                                  aTTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTc                                                                 <  1:1477902/140‑1 (MQ=255)

                                                                   ttCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTca                                                                <  2:272466/140‑1 (MQ=255)

                                                                        aTCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACAt                                                           >  1:817594/1‑140 (MQ=255)

                                                                        aTCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACAt                                                           >  2:912257/1‑140 (MQ=255)

                                                                         tCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATc                                                          <  2:252977/140‑1 (MQ=255)

                                                                          cTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATcc                                                         <  1:912257/140‑1 (MQ=255)

                                                                             gCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGc                                                      <  1:172527/140‑1 (MQ=255)

                                                                                aaaTGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCtt                                                   <  1:487406/140‑1 (MQ=255)

                                                                                aaaTGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCtt                                                   <  1:443714/140‑1 (MQ=255)

                                                                                aaaTGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCtt                                                   <  1:983871/140‑1 (MQ=255)

                                                                                     ccTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTc                                              <  1:960013/140‑1 (MQ=255)

                                                                                       tGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCtt                                            >  2:1200819/1‑140 (MQ=255)

                                                                                       tGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCtt                                            >  1:611104/1‑140 (MQ=255)

                                                                                       tGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCtt                                            >  2:1066266/1‑140 (MQ=255)

                                                                                       tGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCtt                                            >  1:874516/1‑140 (MQ=255)

                                                                                                  ggtCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCg                                 <  1:1066266/140‑1 (MQ=255)

                                                                                                  ggtCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCg                                 <  1:1200819/140‑1 (MQ=255)

                                                                                                        tGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCt                           <  1:1331345/140‑1 (MQ=255)

                                                                                                        tGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCt                           <  1:99167/140‑1 (MQ=255)

                                                                                                        tGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCt                           >  1:394227/1‑140 (MQ=255)

                                                                                                              ggTTATCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCt                     >  1:1045729/1‑140 (MQ=255)

                                                                                                                  aTCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCgg                 >  2:114752/1‑140 (MQ=255)

                                                                                                                  aTCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCgg                 >  2:1074287/1‑140 (MQ=255)

                                                                                                                  aTCTCTTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCgg                 >  1:179711/1‑140 (MQ=255)

                                                                                                                   tctcTTACGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGATAATTCTGCGGc                >  1:452121/1‑140 (MQ=255)

                                                                                                                    ctctTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCa               >  2:906902/1‑140 (MQ=255)

                                                                                                                     tctTCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAg              >  1:729505/1‑140 (MQ=255)

                                                                                                                        tCCGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCgg           >  1:545077/1‑140 (MQ=255)

                                                                                                                         ccGCTGTCTCCACTGCAGCATGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGc          <  2:817594/140‑1 (MQ=255)

                                                                                                                         ccGCTGTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAACAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGc          <  2:1304263/140‑1 (MQ=255)

                                                                                                                              gTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTAt     <  2:394227/140‑1 (MQ=255)

                                                                                                                              gTCTCCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTAt     <  2:1045729/140‑1 (MQ=255)

                                                                                                                                 tcCACTGCAGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAg  <  2:611104/140‑1 (MQ=255)

ATATAAAAGATCGCCTCGATGAATTTGCCAACCTTGAAGAAGATTGTGAGAATTTCGGTATTAGAAATTCTGATCTAGCTAAATGCCTGCAAAAGGGTGGTCATTGTCAGGGTTATCTCTTCCGCTGTCTCCACTGCGGCAAGCTGAGACTGTGGGGTGATTTTTCGTAGTTATTTAAATAATGAGAACAGGCCGGAGCGTAATTCACACATCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAG  >  NC_000913/3898440‑3898708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A