Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,934,717 C→T H314Y (CAT→TAT)  rbsA → ribose ABC transporter ATP binding subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,934,7170CT100.0% 350.6 / NA 101H314Y (CAT→TAT) rbsAribose ABC transporter ATP binding subunit
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (44/57);  total (44/57)

Only 100 of 101 total aligned reads displayed.

TAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTAAAAGAGAACATGTCGCTGACAGCGCTGCGC  >  NC_000913/3934581‑3934848
                                                                                                                                        |                                                                                                                                   
tAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATg                                                                                                                                  <  2:1253685/140‑1 (MQ=255)
 aaCGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGa                                                                                                                                 >  1:5884/1‑140 (MQ=255)
 aaCGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGa                                                                                                                                 >  1:443501/1‑140 (MQ=255)
 aaCGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGa                                                                                                                                 >  1:192751/1‑140 (MQ=255)
 aaCGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGa                                                                                                                                 >  1:1438466/1‑140 (MQ=255)
  aCGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCGCTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGaa                                                                                                                                <  1:829159/140‑1 (MQ=255)
      tGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAATGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCg                                                                                                                            >  2:1462592/1‑140 (MQ=255)
      tGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCg                                                                                                                            >  2:336803/1‑140 (MQ=255)
      tGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCg                                                                                                                            >  1:723159/1‑140 (MQ=255)
      tGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCg                                                                                                                            >  2:825046/1‑140 (MQ=255)
         ctctTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATg                                                                                                                                  >  1:1058998/1‑131 (MQ=255)
         ctctTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATg                                                                                                                                  <  2:1058998/131‑1 (MQ=255)
          tctTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTAc                                                                                                                        >  2:404443/1‑140 (MQ=255)
               tactttacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACTCTGGATGGGTATGAAGTCGTTACCCGtt                                                                                                                   <  2:592312/140‑1 (MQ=255)
               tactttacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGtt                                                                                                                   <  1:404443/140‑1 (MQ=255)
                 ctttacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCa                                                                                                                 >  1:1462029/1‑140 (MQ=255)
                  tttacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCAc                                                                                                                <  2:516563/140‑1 (MQ=255)
                  tttacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCAc                                                                                                                >  1:385973/1‑140 (MQ=255)
                   ttacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCAcc                                                                                                               <  2:5884/140‑1 (MQ=255)
                    tacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCg                                                                                                              >  1:1399959/1‑140 (MQ=255)
                    tacGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCg                                                                                                              >  2:501596/1‑140 (MQ=255)
                      ggCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCa                                                                                                            >  2:907209/2‑140 (MQ=255)
                      cGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTAc                                                                                                                        <  1:1353077/128‑1 (MQ=255)
                      cGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTAc                                                                                                                        >  2:1353077/1‑128 (MQ=255)
                      cGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCa                                                                                                            >  1:1381650/1‑140 (MQ=255)
                      cGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCa                                                                                                            >  2:212828/1‑140 (MQ=255)
                      cGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCa                                                                                                            >  1:436078/1‑140 (MQ=255)
                       gCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAg                                                                                                           <  2:443501/140‑1 (MQ=255)
                        cAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAgg                                                                                                          <  1:236834/140‑1 (MQ=255)
                        cAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAgg                                                                                                          <  1:187564/140‑1 (MQ=255)
                           aGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATg                                                                                                       >  1:217924/1‑140 (MQ=255)
                           aGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATg                                                                                                       >  1:1255885/1‑140 (MQ=255)
                              cGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGcc                                                                                                    <  2:334508/140‑1 (MQ=255)
                                aaaTTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTg                                                                                                  <  2:1202159/140‑1 (MQ=255)
                                aaaTTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTg                                                                                                  <  2:483587/140‑1 (MQ=255)
                                       tGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACg                                                                                           <  1:588852/140‑1 (MQ=255)
                                       tGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACg                                                                                           <  2:723159/140‑1 (MQ=255)
                                       tGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACg                                                                                           >  1:1364583/1‑140 (MQ=255)
                                       tGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACg                                                                                           >  1:804519/1‑140 (MQ=255)
                                       tGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACg                                                                                           <  1:1462592/140‑1 (MQ=255)
                                       tGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACg                                                                                           <  1:825046/140‑1 (MQ=255)
                                       tGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACg                                                                                           <  2:1234336/140‑1 (MQ=255)
                                          cGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCCCCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCa                                                                                        <  2:881074/140‑1 (MQ=255)
                                          cGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCa                                                                                        <  1:814302/140‑1 (MQ=255)
                                          cGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCa                                                                                        <  2:1438466/140‑1 (MQ=255)
                                          cGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCa                                                                                        <  2:677023/140‑1 (MQ=255)
                                          cGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCa                                                                                        <  2:192751/140‑1 (MQ=255)
                                          cGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCa                                                                                        <  1:907209/140‑1 (MQ=255)
                                          cGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCa                                                                                        <  1:501596/140‑1 (MQ=255)
                                          cGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCa                                                                                        <  2:436078/140‑1 (MQ=255)
                                          cGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTAAGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCa                                                                                        <  1:1158710/140‑1 (MQ=255)
                                            tctcTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCAtt                                                                                      <  1:604562/140‑1 (MQ=255)
                                               ctGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCTGTTCACCGCAGGATGGCCTGGCAAACGGCATtgtg                                                                                   <  1:336803/140‑1 (MQ=255)
                                                 ggTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGta                                                                                 <  1:1387219/140‑1 (MQ=255)
                                                   tttGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGtata                                                                               <  2:1255885/140‑1 (MQ=255)
                                                       aTGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATAtctc                                                                           >  1:1118196/1‑140 (MQ=255)
                                                       aTGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATAtctc                                                                           >  1:163373/1‑140 (MQ=255)
                                                         gggCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCg                                                                         <  1:1243598/140‑1 (MQ=255)
                                                          ggCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGa                                                                        <  2:1381650/140‑1 (MQ=255)
                                                            cgcAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCAtt                                                                                      >  2:1015659/1‑124 (MQ=255)
                                                            cgcAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCAtt                                                                                      <  1:1015659/124‑1 (MQ=255)
                                                            cgcAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAg                                                                      >  1:1216664/1‑140 (MQ=255)
                                                            cgcAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAg                                                                      >  1:92934/1‑140 (MQ=255)
                                                                    gTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTaaa                                                              >  1:457417/1‑140 (MQ=255)
                                                                        cGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTg                                                          <  2:184348/140‑1 (MQ=255)
                                                                         gAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGa                                                         <  2:217924/140‑1 (MQ=255)
                                                                           aCTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACg                                                       >  2:619734/1‑140 (MQ=255)
                                                                           aCTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACg                                                       >  2:183005/1‑140 (MQ=255)
                                                                           aCTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACg                                                       >  1:169789/1‑140 (MQ=255)
                                                                              gatgaAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGtt                                                    <  2:1399959/140‑1 (MQ=255)
                                                                              gatgaAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGtt                                                    <  2:804519/140‑1 (MQ=255)
                                                                              gatgaAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGtt                                                    <  2:1118196/140‑1 (MQ=255)
                                                                               atgaAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGttt                                                   <  2:163373/140‑1 (MQ=255)
                                                                                        ctctACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTggg                                          <  2:1216664/140‑1 (MQ=255)
                                                                                           tACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCAt                                       <  2:169789/140‑1 (MQ=255)
                                                                                           tACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCAt                                       <  2:1364583/140‑1 (MQ=255)
                                                                                           tACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCAt                                       <  2:385973/140‑1 (MQ=255)
                                                                                             cGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGt                                     <  2:1462029/140‑1 (MQ=255)
                                                                                                cgcACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGTCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAg                                  >  2:477697/1‑140 (MQ=255)
                                                                                                cgcACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAg                                  >  1:643329/1‑140 (MQ=255)
                                                                                                  cACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTa                                >  2:1145079/1‑140 (MQ=255)
                                                                                                  cACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGTACGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTa                                >  1:1421412/1‑140 (MQ=255)
                                                                                                          cgcACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCAt                                       <  2:444447/125‑1 (MQ=255)
                                                                                                          cgcACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCAt                                       >  1:444447/1‑125 (MQ=255)
                                                                                                           gcACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGTCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTAAAAGAGAAc                       <  1:477697/140‑1 (MQ=255)
                                                                                                           gcACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAGCGTGTCGGTTTAGTGTTGGGCATGTCAGTAAAAGAGAAc                       <  2:143078/140‑1 (MQ=255)
                                                                                                           gcACCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTAAAAGAGAAc                       <  2:92934/140‑1 (MQ=255)
                                                                                                             aCCAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTAAAAGAGAACAt                     >  2:1123648/1‑140 (MQ=255)
                                                                                                               cAGCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTAAAAGAGAACATGt                   >  1:376483/1‑140 (MQ=255)
                                                                                                                 gCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTAAAAgaga                         <  1:783282/132‑1 (MQ=255)
                                                                                                                 gCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTAAAAgaga                         >  2:783282/1‑132 (MQ=255)
                                                                                                                 gCGGTTACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTAAAAGAGAACATGTCg                 >  1:1281792/1‑140 (MQ=255)
                                                                                                                     ttACGTCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTAAAAGAGAACATGTCGCTGa             <  2:457417/140‑1 (MQ=255)
                                                                                                                          tCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTAAAAGAGAACATGTCGCTGACAgcg        <  2:740404/140‑1 (MQ=255)
                                                                                                                          tCACCCTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTAAAAGAGAACATGTCGCTGACAgcg        <  2:376483/140‑1 (MQ=255)
                                                                                                                             cccTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTAAAAGAGAACATGTCGCTGACAgcgctg     >  1:454577/1‑140 (MQ=255)
                                                                                                                               cTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTAAAAGAGAACATGTCGCTGACAgcgctgcg   <  1:950041/140‑1 (MQ=255)
                                                                                                                               cTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTAAAAGAGAACATGTCGCTGACAgcgctgcg   <  1:13431/140‑1 (MQ=255)
                                                                                                                               cTGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTAAAAGAGAACATGTCGCTGACAgcgctgcg   >  1:1244827/1‑140 (MQ=255)
                                                                                                                                tGGATGGGTATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTAAAAGAGAACATGTCGCTGACAgcgctgcgc  >  1:757204/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                   
TAACGATGTCTCTTTTACTTTACGCAAAGGCGAAATTCTTGGCGTCTCTGGTTTGATGGGCGCAGGTCGTACCGAACTGATGAAAGTGCTCTACGGCGCACTACCGCGCACCAGCGGTTACGTCACCCTGGATGGGCATGAAGTCGTTACCCGTTCACCGCAGGATGGCCTGGCAAACGGCATTGTGTATATCTCCGAAGACCGTAAACGTGACGGTTTAGTGTTGGGCATGTCAGTAAAAGAGAACATGTCGCTGACAGCGCTGCGC  >  NC_000913/3934581‑3934848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A