Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,416,367 C→T intergenic (‑75/+74) yjfN ← / ← bsmA protease activator/DUF1471 domain‑containing putative lipoprotein BsmA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,416,3670CT100.0% 385.0 / NA 107intergenic (‑75/+74)yjfN/bsmAprotease activator/DUF1471 domain‑containing putative lipoprotein BsmA
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (47/60);  total (47/60)

Only 100 of 107 total aligned reads displayed.

GCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCACTGTCCTGTCACGATGGTTTCGTCCAC  >  NC_000913/4416239‑4416500
                                                                                                                                |                                                                                                                                     
gcTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTAtt                                                                                                                            <  2:798300/140‑1 (MQ=255)
 cTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATtg                                                                                                                           >  1:1064361/1‑140 (MQ=255)
 cTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATtg                                                                                                                           >  2:421643/1‑140 (MQ=255)
 cTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATtg                                                                                                                           >  2:803177/1‑140 (MQ=255)
   cGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATtgtg                                                                                                                         <  1:1333360/140‑1 (MQ=255)
     cAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATTGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGca                                                                                                                       <  1:41579/140‑1 (MQ=255)
     cAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGca                                                                                                                       <  2:1329541/140‑1 (MQ=255)
      aGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGcac                                                                                                                      >  2:273705/1‑140 (MQ=255)
         aTAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAgg                                                                                                                   >  1:971809/1‑140 (MQ=255)
         aTAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAgg                                                                                                                   <  1:1346701/140‑1 (MQ=255)
            aGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTaa                                                                                                                <  1:297056/140‑1 (MQ=255)
             gTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTaaa                                                                                                               >  2:1098955/1‑140 (MQ=255)
                aCTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTAtt                                                                                                                            <  1:1131358/124‑1 (MQ=255)
                aCTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTAtt                                                                                                                            >  2:1131358/1‑124 (MQ=255)
                aCTAATTGCAGCGAGGGAGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGc                                                                                                            >  1:1400496/1‑140 (MQ=255)
                  tAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTAtt                                                                                                                            <  1:1243066/122‑1 (MQ=255)
                  tAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTAtt                                                                                                                            >  2:1243066/1‑122 (MQ=255)
                  tAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCAt                                                                                                          >  2:741318/1‑140 (MQ=255)
                  tAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCAt                                                                                                          >  2:506262/1‑140 (MQ=255)
                    aTTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAg                                                                                                        <  1:273705/140‑1 (MQ=255)
                    aTTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAg                                                                                                        <  2:642483/140‑1 (MQ=255)
                     ttGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAgg                                                                                                       <  2:1064361/140‑1 (MQ=255)
                        cAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGAc                                                                                                    >  2:964743/1‑140 (MQ=255)
                        cAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGAc                                                                                                    >  2:970952/1‑140 (MQ=255)
                           cGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCa                                                                                                 <  2:478255/140‑1 (MQ=255)
                           cGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCa                                                                                                 <  2:1329012/140‑1 (MQ=255)
                              gggTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAg                                                                                              <  1:506262/140‑1 (MQ=255)
                               ggTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGc                                                                                             >  2:1472726/1‑140 (MQ=255)
                                   aGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATg                                                                                         <  1:289870/140‑1 (MQ=255)
                                   aGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATg                                                                                         >  2:1325512/1‑140 (MQ=255)
                                     gCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTa                                                                                       >  1:1398599/1‑140 (MQ=255)
                                        aGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAg                                                                                    <  1:256731/140‑1 (MQ=255)
                                        aGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTACATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAg                                                                                    <  1:1417040/140‑1 (MQ=255)
                                          tAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGc                                                                                   <  1:1230779/139‑1 (MQ=255)
                                          tAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCt                                                                                  <  1:614415/140‑1 (MQ=255)
                                           aaTTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTg                                                                                 <  2:342776/140‑1 (MQ=255)
                                           aaTTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTg                                                                                 <  2:1273450/140‑1 (MQ=255)
                                               gTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTa                                                                             <  1:1325512/140‑1 (MQ=255)
                                               gTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTa                                                                             <  1:1472726/140‑1 (MQ=255)
                                                  tCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGt                                                                          >  1:1110881/1‑140 (MQ=255)
                                                  tCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGt                                                                          >  2:827157/1‑140 (MQ=255)
                                                   cATCGTCAGCTCCATTTTTCGTTTCCCCACTTGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTa                                                                         <  2:912857/140‑1 (MQ=255)
                                                     tCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAg                                                                       >  2:326283/1‑140 (MQ=255)
                                                         cAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGt                                                                   <  2:139944/140‑1 (MQ=255)
                                                         cAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGt                                                                   <  1:421643/140‑1 (MQ=255)
                                                         cAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGt                                                                   <  1:388067/140‑1 (MQ=255)
                                                         cAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGt                                                                   <  1:827157/140‑1 (MQ=255)
                                                         cAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGt                                                                   <  1:1286566/140‑1 (MQ=255)
                                                            cTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTg                                                                >  2:982687/1‑140 (MQ=255)
                                                            cTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTg                                                                >  1:54553/1‑140 (MQ=255)
                                                                   tttCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGatttatt                                                         <  1:970952/140‑1 (MQ=255)
                                                                     tCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGAtttattta                                                       <  2:1110881/140‑1 (MQ=255)
                                                                     tCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGAtttattta                                                       <  1:326283/140‑1 (MQ=255)
                                                                      cGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTAc                                                      >  2:538419/1‑140 (MQ=255)
                                                                       gTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACg                                                     <  1:538419/140‑1 (MQ=255)
                                                                        tttCCCCACATGCTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACgg                                                    <  2:934588/140‑1 (MQ=255)
                                                                            cccACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACa                                                <  2:54553/140‑1 (MQ=255)
                                                                                caTGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAAt                                            <  1:504659/140‑1 (MQ=255)
                                                                                  tGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATgg                                          <  2:1032943/140‑1 (MQ=255)
                                                                                   gTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGc                                         <  1:1379269/140‑1 (MQ=255)
                                                                                   gTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGc                                         <  1:982687/140‑1 (MQ=255)
                                                                                    ttGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCt                                        >  1:995223/1‑140 (MQ=255)
                                                                                     tGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGc                                         <  2:78460/138‑1 (MQ=255)
                                                                                     tGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCtt                                       >  2:1261110/1‑140 (MQ=255)
                                                                                     tGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCtt                                       <  2:971809/140‑1 (MQ=255)
                                                                                      gCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCtt                                       >  1:605497/1‑139 (MQ=255)
                                                                                      gCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCtt                                       <  2:605497/139‑1 (MQ=255)
                                                                                       cAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTtgt                                     >  1:1134398/1‑140 (MQ=255)
                                                                                          ggCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGaa                                  >  1:853402/1‑140 (MQ=255)
                                                                                          ggCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGaa                                  <  1:964743/140‑1 (MQ=255)
                                                                                          ggCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGaa                                  <  2:92188/140‑1 (MQ=255)
                                                                                            cATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATgg                                          >  2:1364849/1‑130 (MQ=255)
                                                                                             aTTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATAc                               <  2:1400496/140‑1 (MQ=255)
                                                                                              ttCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCtt                                       <  2:552102/131‑1 (MQ=255)
                                                                                              ttCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCtt                                       >  1:552102/1‑131 (MQ=255)
                                                                                               tCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCtt                                       <  1:84448/130‑1 (MQ=255)
                                                                                               tCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCtt                                       >  2:84448/1‑130 (MQ=255)
                                                                                               tCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCa                             >  1:113186/1‑140 (MQ=255)
                                                                                               tCCATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCa                             >  2:535907/1‑140 (MQ=255)
                                                                                                 cATCGCGGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCAct                           <  2:113186/140‑1 (MQ=255)
                                                                                                    cgcgGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTtgtg                                    >  2:1427956/1‑128 (MQ=255)
                                                                                                    cgcgGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTtgtg                                    <  1:1427956/128‑1 (MQ=255)
                                                                                                    cgcgGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGaa                                  >  2:1399719/1‑130 (MQ=255)
                                                                                                    cgcgGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGaa                                  <  1:1399719/130‑1 (MQ=255)
                                                                                                    cgcgGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCActgtc                        >  2:1122213/1‑140 (MQ=255)
                                                                                                    cgcgGTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCActgtc                        >  1:650931/1‑140 (MQ=255)
                                                                                                        gTAATAAACGCCCAGGCTTCCAGTTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCActgtcctgt                    >  2:185031/1‑140 (MQ=255)
                                                                                                        gTAATAAACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCActgtcctgt                    >  2:964268/1‑140 (MQ=255)
                                                                                                         taataaACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCActgtcctgtc                   >  1:1040687/1‑140 (MQ=255)
                                                                                                            taaACGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCACTGTCCTGTCACg                <  1:287170/140‑1 (MQ=255)
                                                                                                               aCGCCCAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCACTGTCCTGTCACGATg             <  1:1122213/140‑1 (MQ=255)
                                                                                                                  cccAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCACTGTCCTGTCACGATGGtt          <  1:1098955/140‑1 (MQ=255)
                                                                                                                   ccAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCACTGTCCTGTCACGATg             <  2:693834/136‑1 (MQ=255)
                                                                                                                   ccAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCACTGTCCTGTCACGATg             >  1:693834/1‑136 (MQ=255)
                                                                                                                   ccAGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCACTGTCCTGTCACGATGGttt         >  1:1326462/1‑140 (MQ=255)
                                                                                                                     aGGCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCACTGTCCTGTCACGATGGTTTCg       >  1:373635/1‑140 (MQ=255)
                                                                                                                       gCTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCACTGTCCTGTCACGATGGTTTCGTc     >  1:777535/1‑140 (MQ=255)
                                                                                                                        cTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCACTGTCCTGTCACGATGGTTTCGTcc    <  1:273457/140‑1 (MQ=255)
                                                                                                                        cTTCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCACTGTCCTGTCACGATGGTTTCGTcc    <  2:1398599/140‑1 (MQ=255)
                                                                                                                          tCCAGCTGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCACTGTCCTGTCACGATGGTTTCGTccac  <  2:650931/140‑1 (MQ=255)
                                                                                                                                |                                                                                                                                     
GCTCGCAGGATAAGTCACTAATTGCAGCGAGGGTGAGGCAAGTAATTGTTTCATCGTCAGCTCCATTTTTCGTTTCCCCACATGTTGCAGGGCATTCCATCGCGGTAATAAACGCCCAGGCTTCCAGCCGGTAATTTATTGTGCACAGGTAAACGCATAGGGACGCAAAGCAATGTAAAGCTGACTATGTAAGTTGTCTGATTTATTTACGGTACAAAATGGCTTGTGAATACCACTGTCCTGTCACGATGGTTTCGTCCAC  >  NC_000913/4416239‑4416500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A