Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,548,789 A→G intergenic (+1/‑19) fimG → / → fimH type 1 fimbriae minor subunit FimG/type 1 fimbriae D‑mannose specific adhesin

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,548,7890AG100.0% 310.3 / NA 89intergenic (+1/‑19)fimG/fimHtype 1 fimbriae minor subunit FimG/type 1 fimbriae D‑mannose specific adhesin
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (48/41);  total (48/41)

CAACCAAAACAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCA  >  NC_000913/4548652‑4548925
                                                                                                                                         |                                                                                                                                        
cAACCAAAACAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGcc                                                                                                                                        >  1:1108430/1‑140 (MQ=255)
cAACCAAAACAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGcc                                                                                                                                        >  1:888191/1‑140 (MQ=255)
cAACCAAAACAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATT‑ACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGccc                                                                                                                                       >  1:280287/1‑140 (MQ=255)
   ccAAAACAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGa                                                                                                                                     <  2:888191/140‑1 (MQ=255)
   ccAAAACAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGa                                                                                                                                     <  2:1465605/140‑1 (MQ=255)
       aaCAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAagag                                                                                                                                 >  1:592540/1‑140 (MQ=255)
       aaCAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAagag                                                                                                                                 >  1:641844/1‑140 (MQ=255)
        aCAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAgaga                                                                                                                                <  1:900833/140‑1 (MQ=255)
         cAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAgat                                                                                                                               <  1:480414/140‑1 (MQ=255)
           gTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAgatga                                                                                                                             <  2:1044858/140‑1 (MQ=255)
             tCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGAtt                                                                                                                           >  1:96219/1‑140 (MQ=255)
             tCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGAtt                                                                                                                           >  1:507475/1‑140 (MQ=255)
             tCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGAtt                                                                                                                           >  2:799253/1‑140 (MQ=255)
             tCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGAtt                                                                                                                           >  1:1171164/1‑140 (MQ=255)
                  tGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTTAGCCCGAAGAGATGATTGTAAt                                                                                                                      <  1:1485189/140‑1 (MQ=255)
                    gatgatTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAAGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGa                                                                                                                    >  2:1036501/1‑140 (MQ=255)
                      tgatTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAgatga                                                                                                                             <  2:1444758/129‑1 (MQ=255)
                      tgatTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAgatga                                                                                                                             >  1:1444758/1‑129 (MQ=255)
                      tgatTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGaaa                                                                                                                  >  1:1323986/1‑140 (MQ=255)
                      tgatTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGaaa                                                                                                                  <  2:592540/140‑1 (MQ=255)
                      tgatTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGaaa                                                                                                                  <  2:641844/140‑1 (MQ=255)
                        atTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACg                                                                                                                <  2:868231/140‑1 (MQ=255)
                        atTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACg                                                                                                                <  2:1323986/140‑1 (MQ=255)
                           ccTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGt                                                                                                             >  1:274587/1‑140 (MQ=255)
                               acaATCAGCGCACTTCCCGTTACAGGTCAGAGCATT‑ACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGttatta                                                                                                        <  2:280287/140‑1 (MQ=255)
                                 aaTCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTAc                                                                                                       <  1:799253/140‑1 (MQ=255)
                                  aTCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACg                                                                                                                >  2:657088/1‑130 (MQ=255)
                                  aTCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACg                                                                                                                <  1:657088/130‑1 (MQ=255)
                                    cAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCt                                                                                                    <  2:1171164/140‑1 (MQ=255)
                                     aGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAg                                                                                                              <  1:753953/129‑1 (MQ=255)
                                     aGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAg                                                                                                              >  2:753953/1‑129 (MQ=255)
                                         cACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTg                                                                                               <  1:101579/140‑1 (MQ=255)
                                         cACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTg                                                                                               <  2:402595/140‑1 (MQ=255)
                                              cccGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCTCCTATACCTACAGCTGAGTCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTa                                                                                          <  2:168602/140‑1 (MQ=255)
                                               ccGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCt                                                                                                    >  2:372648/1‑129 (MQ=255)
                                               ccGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCt                                                                                                    <  1:372648/129‑1 (MQ=255)
                                               ccGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTAc                                                                                         <  1:172451/140‑1 (MQ=255)
                                                 gTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTActg                                                                                       >  2:1212626/1‑140 (MQ=255)
                                                        gTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATgg                                                                                >  2:1344333/1‑140 (MQ=255)
                                                        gTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATgg                                                                                >  1:1463280/1‑140 (MQ=255)
                                                        gTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATgg                                                                                >  1:1393997/1‑140 (MQ=255)
                                                        gTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATgg                                                                                >  2:283250/1‑140 (MQ=255)
                                                            gagCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGGGTTATTACCCTGTTTGCTGTACTGCTGATGGGc                                                                              >  2:71208/1‑138 (MQ=255)
                                                            gagCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGGGTTATTACCCTGTTTGCTGTACTGCTGATGGGc                                                                              <  1:71208/138‑1 (MQ=255)
                                                             agCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTgg                                                                           >  1:82291/1‑140 (MQ=255)
                                                                  tGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGt                                                                          >  1:901891/1‑136 (MQ=255)
                                                                  tGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGt                                                                          <  2:901891/136‑1 (MQ=255)
                                                                  tGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGt                                                                      >  2:932405/1‑140 (MQ=255)
                                                                  tGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGt                                                                      >  2:784340/1‑140 (MQ=255)
                                                                  tGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGt                                                                      >  2:791631/1‑140 (MQ=255)
                                                                  tGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGt                                                                      >  2:423714/1‑140 (MQ=255)
                                                                   gACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTa                                                                     <  2:82291/140‑1 (MQ=255)
                                                                    aCAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTaa                                                                    <  1:660327/140‑1 (MQ=255)
                                                                        tAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGt                                                                      >  2:737648/1‑134 (MQ=255)
                                                                        tAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGt                                                                      <  1:737648/134‑1 (MQ=255)
                                                                          aaTGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGc                                                                              <  1:1118251/124‑1 (MQ=255)
                                                                          aaTGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGc                                                                              >  2:1118251/1‑124 (MQ=255)
                                                                          aaTGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCt                                                              <  2:96219/140‑1 (MQ=255)
                                                                          aaTGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCt                                                              <  1:932405/140‑1 (MQ=255)
                                                                          aaTGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCt                                                              >  1:813943/1‑140 (MQ=255)
                                                                               cGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCa                                                         >  2:631435/1‑140 (MQ=255)
                                                                                 gAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCAtt                                                       >  1:1094715/1‑140 (MQ=255)
                                                                                  aGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTc                                                      <  1:175269/140‑1 (MQ=255)
                                                                                  aGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTc                                                      <  2:274587/140‑1 (MQ=255)
                                                                                              aaCCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAAcc                                          >  2:893372/1‑140 (MQ=255)
                                                                                              aaCCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAAcc                                          >  1:1246870/1‑140 (MQ=255)
                                                                                                 cATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGcc                                       >  2:485129/1‑140 (MQ=255)
                                                                                                   ttCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCaa                                     >  2:431353/1‑140 (MQ=255)
                                                                                                      aGGCAGTGTTAAGCATCCCCTATCCCTACGGCTGAGCCGGAAGAGATGCTTGTAATGAACCGAGTTATTCCCCTTTTGGCTGTCCGGCTGATGGGTGGGTCGGTAAATGCCGGGTCATTCGCCTGTAAAACCGCCAATgg                                  <  2:507475/140‑1 (MQ=255)
                                                                                                      aGGCAGTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATgg                                  <  1:1344333/140‑1 (MQ=255)
                                                                                                         aaGTGATTAGCACCCCCTATACCTACAGCTGAGCCAGAAGAGATGATTGTAATGAACCGATTTATTCCCCTTTTTGTTGTACTGCTGAGGGGCGGGTCGGTAAATGCCTGGTCATCCGCCTGAAAAACCGCCAATGGTAc                               <  2:1094715/139‑1 (MQ=255)
                                                                                                         aaGTGATTAGAACCACCTATACCTACAGCGGAGCCGGAAGAGATGATTGTAATGAAACGATTTTTTCCCCTGTTTGCTGTACTGTTGATGGGCGGGGCGGTAAATGCCTGGTAATTCCCCTGAAAAACCGCCAATGGTAc                               <  2:695447/139‑1 (MQ=255)
                                                                                                           gTGATTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCg                             <  1:423714/140‑1 (MQ=255)
                                                                                                             gATTAGCATCCCCTATCCCTACAGCTGAGCCCGAAGAGATGATTGTAATAAAACGTTTTATTCCCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCt                           <  2:502801/140‑1 (MQ=255)
                                                                                                              aTTAGCATCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTa                          >  2:875347/1‑140 (MQ=255)
                                                                                                               ttAGCATCACCTATCCCTACAGCTGAGCCGGAAGAGATGATTGTAATAAAACGATTTATTCCCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTAt                         <  2:1393997/140‑1 (MQ=255)
                                                                                                                    aTCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTCCCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTa                    <  1:1036501/140‑1 (MQ=255)
                                                                                                                    aTCACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTa                    <  1:283250/140‑1 (MQ=255)
                                                                                                                      cACCTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTAtt                  <  1:875347/140‑1 (MQ=255)
                                                                                                                        ccTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTa                                >  1:837826/1‑124 (MQ=255)
                                                                                                                        ccTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTa                                <  2:837826/124‑1 (MQ=255)
                                                                                                                        ccTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTa                    <  1:14417/136‑1 (MQ=255)
                                                                                                                        ccTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTa                    >  2:14417/1‑136 (MQ=255)
                                                                                                                        ccTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTgg                >  1:1258434/1‑140 (MQ=255)
                                                                                                                        ccTATACCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTgg                >  2:833250/1‑140 (MQ=255)
                                                                                                                         cTATACCAACAGCTGAGCCGGAAGAGATGATTATAATGAAACGATTTATTACCCTGTTTGCTGTACTGCTGATGGGTTGGTCGAAAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGc               <  2:1246870/140‑1 (MQ=255)
                                                                                                                            taCCTACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGt            >  1:839617/1‑140 (MQ=255)
                                                                                                                                tACAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCa        <  2:813943/140‑1 (MQ=255)
                                                                                                                                 aCAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTa                    >  1:906596/1‑127 (MQ=255)
                                                                                                                                 aCAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTa                    <  2:906596/127‑1 (MQ=255)
                                                                                                                                 aCAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAg       >  2:1152752/1‑140 (MQ=255)
                                                                                                                                  cAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTCCCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTgg          <  2:318693/136‑1 (MQ=255)
                                                                                                                                  cAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTgg          >  1:318693/1‑136 (MQ=255)
                                                                                                                                  cAGCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTATAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTgggccc      >  2:1381339/1‑136 (MQ=255)
                                                                                                                                   aGCTGAGCCCGCAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGCTCGGTAAATGCCTGATCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGtccgggcg     >  2:572730/1‑133 (MQ=255)
                                                                                                                                    gCTGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAgcgc    <  1:1212626/140‑1 (MQ=255)
                                                                                                                                      tGAGCCCGAAGAGATGATTGTAATGAAACGAGTTATTCCCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCa  <  1:431353/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
CAACCAAAACAGTTCAGGTGGATGATTCCTCACAATCAGCGCACTTCCCGTTACAGGTCAGAGCATTGACAGTAAATGGCGGAGCCACTCAGGGAACCATTCAGGCAGTGATTAGCATCACCTATACCTACAGCTGAACCCGAAGAGATGATTGTAATGAAACGAGTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCA  >  NC_000913/4548652‑4548925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A