Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 151 87.4 2971636 99.2% 2947862 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,606,382 A→G noncoding (20/87 nt) leuQ ← tRNA‑Leu

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,606,3820AG98.6% 241.2 / ‑4.4 70noncoding (20/87 nt)leuQtRNA‑Leu
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base G (34/35);  total (35/35)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.26e-01

ACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCAT  >  NC_000913/4606248‑4606514
                                                                                                                                      |                                                                                                                                    
acCTTAAGCTAGCGCGTCAACCAATTCCACCACCTGCGCCCAGTGCCAGCAATATCAACGGGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAAt                                                                                                                                 <  2:821803/140‑1 (MQ=21)
  cTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTc                                                                                                                               <  1:963797/140‑1 (MQ=255)
    gAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCg                                                                                                                             <  2:678872/140‑1 (MQ=255)
     aaGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGTCCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGc                                                                                                                            <  2:1329562/140‑1 (MQ=255)
      aGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGcc                                                                                                                           >  1:843441/1‑140 (MQ=255)
       gCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCa                                                                                                                          <  2:843441/140‑1 (MQ=255)
       gCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCa                                                                                                                          <  1:1402407/140‑1 (MQ=255)
          aGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGc                                                                                                                            >  1:32140/1‑135 (MQ=255)
          aGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGc                                                                                                                            <  2:32140/135‑1 (MQ=255)
             gcgTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCg                                                                                                                    <  1:614945/140‑1 (MQ=255)
                tCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCa                                                                                                                                   >  2:997310/1‑122 (MQ=255)
                tCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCa                                                                                                                                   <  1:997310/122‑1 (MQ=255)
                tCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCAt                                                                                                                 >  1:478115/1‑140 (MQ=255)
                 cTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTCTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATa                                                                                                                >  2:730208/1‑140 (MQ=255)
                            gCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCt                                                                                                     >  1:658619/1‑140 (MQ=255)
                             ccACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCtt                                                                                                    >  2:298167/1‑140 (MQ=255)
                             ccACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCtt                                                                                                    <  2:478115/140‑1 (MQ=255)
                             ccACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCtt                                                                                                    >  1:1165417/1‑140 (MQ=255)
                                  ttCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTaaaaa                                                                                               >  2:593845/1‑140 (MQ=255)
                                      cccAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAAt                                                                                           <  2:1220751/140‑1 (MQ=255)
                                      cccAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAAt                                                                                           <  2:1165417/140‑1 (MQ=255)
                                           tGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTa                                                                                      >  2:1021728/1‑140 (MQ=255)
                                             cGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTAcc                                                                                    >  2:1475548/1‑140 (MQ=255)
                                                gCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACg                                                                                 <  1:298167/140‑1 (MQ=255)
                                                gCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAACTCTTAAAAAGAATTGCTACCACg                                                                                 <  2:787755/140‑1 (MQ=255)
                                                 cAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACgg                                                                                <  1:1021728/140‑1 (MQ=255)
                                                     atCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGgc                                                                            >  1:1308098/1‑140 (MQ=255)
                                                      tCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGgcg                                                                           <  1:30423/140‑1 (MQ=255)
                                                            tGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCt                                                                     >  2:1101052/1‑140 (MQ=255)
                                                              gTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAg                                                                   >  2:906000/1‑140 (MQ=255)
                                                              gTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAg                                                                   >  1:107231/1‑140 (MQ=255)
                                                                ttttGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTg                                                                 <  1:1101052/140‑1 (MQ=255)
                                                                        cGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAg                                                         >  2:892424/1‑140 (MQ=255)
                                                                        cGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAg                                                         >  2:295778/1‑140 (MQ=255)
                                                                         gAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGc                                                        <  1:593845/140‑1 (MQ=255)
                                                                           ggggggggACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCtt                                                      <  1:1008087/140‑1 (MQ=255)
                                                                           ggggggggACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCtt                                                      <  2:107231/140‑1 (MQ=255)
                                                                                   aCTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCaa                                              <  1:869755/140‑1 (MQ=255)
                                                                                       gAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCGATTCTTAAAAAGAATTGCTACCACGGAGGCACATTCTAGTGGTTTTCAGCTTTTCGTCAATAGt                                          >  2:1183887/1‑140 (MQ=255)
                                                                                       gAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAAt                                             >  1:1263992/1‑137 (MQ=255)
                                                                                       gAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAAt                                             <  2:1263992/137‑1 (MQ=255)
                                                                                       gAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGt                                          >  2:509587/1‑140 (MQ=255)
                                                                                        aaCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGtt                                         >  1:1171531/1‑140 (MQ=255)
                                                                                         aCCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTa                                        <  1:519138/140‑1 (MQ=255)
                                                                                            cccACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAAtt                                     >  2:704789/1‑140 (MQ=255)
                                                                                              cACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTAt                                   <  1:194847/140‑1 (MQ=255)
                                                                                                 gTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGACAATAGTTAATTATCGa                                <  1:730208/140‑1 (MQ=255)
                                                                                                  tCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGAc                               <  1:906000/140‑1 (MQ=255)
                                                                                                   ccGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAATGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACa                              <  2:1308098/140‑1 (MQ=255)
                                                                                                   ccGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATcaa                                <  1:705308/138‑3 (MQ=255)
                                                                                                   ccGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATcaa                                >  2:705308/1‑136 (MQ=255)
                                                                                                   ccGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACa                              <  1:1436964/140‑1 (MQ=255)
                                                                                                    cGTAAGGACACTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACag                             <  1:1475548/140‑1 (MQ=255)
                                                                                                           acacTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTa                      >  1:49939/1‑140 (MQ=255)
                                                                                                           acacTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTa                      >  2:959026/1‑140 (MQ=255)
                                                                                                             acTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGTATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGAc                               <  2:1328203/129‑1 (MQ=255)
                                                                                                             acTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGAc                               >  1:1328203/1‑129 (MQ=255)
                                                                                                             acTAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAAt                    >  2:869802/1‑140 (MQ=255)
                                                                                                               tAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTg                  >  2:1051463/1‑140 (MQ=255)
                                                                                                               tAACACCTGAAGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTg                  >  2:673131/1‑140 (MQ=255)
                                                                                                                        aaGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGaaaaa         >  2:680238/1‑140 (MQ=255)
                                                                                                                         aGCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAAt        >  2:699116/1‑140 (MQ=255)
                                                                                                                          gCTAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATg       <  1:295778/140‑1 (MQ=255)
                                                                                                                            tAGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTc     <  1:673131/140‑1 (MQ=255)
                                                                                                                             aGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTcc    >  1:1075027/1‑140 (MQ=255)
                                                                                                                             aGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTcc    >  1:173411/1‑140 (MQ=255)
                                                                                                                             aGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTcc    >  1:835243/1‑140 (MQ=255)
                                                                                                                             aGCGCGTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTcc    >  2:1148293/1‑140 (MQ=255)
                                                                                                                               cgcgTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCAt  >  2:5297/1‑140 (MQ=255)
                                                                                                                               cgcgTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCAt  <  2:835243/140‑1 (MQ=255)
                                                                                                                               cgcgTCTGCCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCAt  <  2:1171531/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                    
ACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCCCAGTGCGAGCAATATCAACGTGGTTTTTGGTGCGAGGGGGGGGACTTGAACCCCCACGTCCGTAAGGACACTAACACCTGAAGCTAGCGCGTCTACCAATTCCGCCACCTTCGCATACCATCAATTCTTAAAAAGAATTGCTACCACGGAGGCGCATTCTAGTGGTTTTCAGCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCAT  >  NC_000913/4606248‑4606514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A