Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	129,506	A→G	R585R (CGT→CGC)	yacH ←	DUF3300 domain‑containing protein YacH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	129,506	0	A	G	100.0%	367.8 / NA	98	R585R (CGT→CGC)	yacH	DUF3300 domain‑containing protein YacH
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (66/32); total (66/32)

GGCTAACCACGCCGCTTTTTTTACGTCTGCAATTTACCTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGACGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTAAACACC  >  NC_000913/129374‑129641

ggCTAACCACGCCGCTTTTTTTACGTCTGCAATTTACCTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTtgtg                                                                                                                                  >  1:734811/1‑140 (MQ=255)

          gccgcTTTTTTTACGTCTGCAATTTACCTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCtctc                                                                                                                        >  1:765124/1‑140 (MQ=255)

          gccgcTTTTTTTACGTCTGCAATTTACCTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCtctc                                                                                                                        <  1:522330/140‑1 (MQ=255)

           ccgcTTTTTTTACGTCTGCAATTTACCTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTcc                                                                                                                       >  2:700491/1‑140 (MQ=255)

            cgcTTTTTTTACGTCTGCAATTTACCTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGggcgg                                                                                                                             <  1:372250/133‑1 (MQ=255)

            cgcTTTTTTTACGTCTGCAATTTACCTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGggcgg                                                                                                                             >  2:372250/1‑133 (MQ=255)

            cgcTTTTTTTACGTCTGCAATTTACCTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCt                                                                                                                      >  1:974227/1‑140 (MQ=255)

                ttttttACGTCTGCAATTTACCTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAAc                                                                                                                  >  1:1669053/1‑140 (MQ=255)

                           tGCAATTTACCTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGaa                                                                                                       >  1:735815/1‑140 (MQ=255)

                           tGCAATTTACCTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGaa                                                                                                       >  2:407534/1‑140 (MQ=255)

                           tGCAATTTACCTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGaa                                                                                                       >  1:1555343/1‑140 (MQ=255)

                           tGCAATTTACCTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGaa                                                                                                       >  2:705121/1‑140 (MQ=255)

                           tGCAATTTACCTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGaa                                                                                                       >  2:720009/1‑140 (MQ=255)

                                tttACCTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCACCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAAcc                                                                                                  <  2:1555343/140‑1 (MQ=255)

                                     cTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACg                                                                                             <  1:1335454/140‑1 (MQ=255)

                                     cTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACg                                                                                             <  1:705121/140‑1 (MQ=255)

                                     cTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACg                                                                                             <  2:816484/140‑1 (MQ=255)

                                     cTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACg                                                                                             <  2:735815/140‑1 (MQ=255)

                                     cTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACg                                                                                             <  1:1212305/140‑1 (MQ=255)

                                       ttCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACgtt                                                                                           >  1:1448184/1‑140 (MQ=255)

                                        tCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACgttg                                                                                          >  1:1405000/1‑140 (MQ=255)

                                        tCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACgttg                                                                                          >  1:1284662/1‑140 (MQ=255)

                                            gTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCa                                                                                      >  2:842022/1‑140 (MQ=255)

                                             tcttctTGCTCCACGTTCAGAGAGACGTTCTCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAg                                                                                     >  2:1241715/1‑140 (MQ=255)

                                             tcttctTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAg                                                                                     >  1:676036/1‑140 (MQ=255)

                                             tcttctTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAg                                                                                     <  2:1669053/140‑1 (MQ=255)

                                                 cttGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGAc                                                                                              <  2:1322356/127‑1 (MQ=255)

                                                 cttGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGAc                                                                                              >  1:1322356/1‑127 (MQ=255)

                                                 cttGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACgttgtt                                                                                        <  1:244700/133‑1 (MQ=255)

                                                 cttGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACgttgtt                                                                                        >  2:244700/1‑133 (MQ=255)

                                                 cttGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGa                                                                                 >  1:248261/1‑140 (MQ=255)

                                                  ttGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGAt                                                                                <  2:964286/140‑1 (MQ=255)

                                                         aCGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGCTCAGGTGATGCCGAtt                                                                         >  2:627306/1‑140 (MQ=255)

                                                          cGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTg                                                                        >  1:1621067/1‑140 (MQ=255)

                                                              cAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAaca                                                                    >  1:936236/1‑140 (MQ=255)

                                                                    gaCGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGCTCAGGTGATGCCGATTGAACACGCTgg                                                              <  1:627306/140‑1 (MQ=255)

                                                                         tCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTggcgggc                                                         >  2:868745/1‑140 (MQ=255)

                                                                         tCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTggcgggc                                                         >  1:721677/1‑140 (MQ=255)

                                                                             aTACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTa                                                     >  2:369212/1‑140 (MQ=255)

                                                                                  gctgACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACg                                                <  1:868745/140‑1 (MQ=255)

                                                                                   ctgACCGTTGCTCGTTGTTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGt                                               >  2:1183314/1‑140 (MQ=255)

                                                                                   ctgACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGt                                               >  2:600165/1‑140 (MQ=255)

                                                                                    ttaCCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGtt                                              <  1:1537051/138‑1 (MQ=255)

                                                                                    tgACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGtt                                              <  1:407534/140‑1 (MQ=255)

                                                                                     gACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTg                                             >  1:687545/1‑140 (MQ=255)

                                                                                       ccGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCt                                           >  2:1471692/1‑140 (MQ=255)

                                                                                         gTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGt                                         >  1:583612/1‑140 (MQ=255)

                                                                                          ttGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGtt                                        <  2:721677/140‑1 (MQ=255)

                                                                                           tGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGtt                                              <  2:800140/133‑1 (MQ=255)

                                                                                           tGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGtt                                              >  1:800140/1‑133 (MQ=255)

                                                                                           tGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTg                                       >  1:465531/1‑140 (MQ=255)

                                                                                             cTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTg                                          <  2:874769/135‑1 (MQ=255)

                                                                                             cTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTg                                          >  1:874769/1‑135 (MQ=255)

                                                                                                  tATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCa                                                  >  1:1144312/1‑122 (MQ=255)

                                                                                                  tATTCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCa                                                  <  2:1144312/122‑1 (MQ=255)

                                                                                                     tCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTggg                             <  2:248261/140‑1 (MQ=255)

                                                                                                     tCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTggg                             >  2:1106566/1‑140 (MQ=255)

                                                                                                     tCAGCCTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTggg                             >  1:645107/1‑140 (MQ=255)

                                                                                                         ccTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCgct                         >  1:638435/1‑140 (MQ=255)

                                                                                                          cTGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCgctg                        >  1:1047297/1‑140 (MQ=255)

                                                                                                           tGACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCgctgc                       >  1:442673/1‑140 (MQ=255)

                                                                                                            gACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCgctgct                      >  2:283455/1‑140 (MQ=255)

                                                                                                            gACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCgctgct                      <  2:645107/140‑1 (MQ=255)

                                                                                                            gACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCgctgct                      >  2:1152575/1‑140 (MQ=255)

                                                                                                            gACAGTATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTG‑ACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGctgctg                     >  1:951141/1‑140 (MQ=255)

                                                                                                            gACAGTATGGTTACTGTCGTTTAGGCGTTGAGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCgctgct                      <  2:1047297/140‑1 (MQ=255)

                                                                                                                 tATGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACt                 >  1:1131279/1‑140 (MQ=255)

                                                                                                                  aTGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACtt                <  2:676036/140‑1 (MQ=255)

                                                                                                                   tGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACttt               >  1:1616186/1‑140 (MQ=255)

                                                                                                                   tGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACttt               >  1:356605/1‑140 (MQ=255)

                                                                                                                   tGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACttt               >  2:337195/1‑140 (MQ=255)

                                                                                                                   tGGTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACttt               >  2:251034/1‑140 (MQ=255)

                                                                                                                    ggTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACtttt              <  1:1152575/140‑1 (MQ=255)

                                                                                                                    ggTTACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACtttt              <  1:283455/140‑1 (MQ=255)

                                                                                                                       tACTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTcc           >  1:1058558/1‑140 (MQ=255)

                                                                                                                        aCTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGgcgc                          <  1:1091420/124‑1 (MQ=255)

                                                                                                                        aCTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGgcgc                          >  2:1091420/1‑124 (MQ=255)

                                                                                                                        aCTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCt          >  1:756121/1‑140 (MQ=255)

                                                                                                                        aCTGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCt          >  1:755520/1‑140 (MQ=255)

                                                                                                                          tGTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTa        <  2:1405000/140‑1 (MQ=255)

                                                                                                                           gTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTTCTTaa       >  1:1499578/1‑140 (MQ=255)

                                                                                                                           gTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTaa       >  1:1528240/1‑140 (MQ=255)

                                                                                                                           gTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTaa       >  1:1530115/1‑140 (MQ=255)

                                                                                                                           gTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTaa       >  1:1198368/1‑140 (MQ=255)

                                                                                                                           gTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTaa       >  1:78251/1‑140 (MQ=255)

                                                                                                                           gTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTaa       >  2:836418/1‑140 (MQ=255)

                                                                                                                           gTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTaa       >  2:396178/1‑140 (MQ=255)

                                                                                                                           gTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTaa       >  1:874387/1‑140 (MQ=255)

                                                                                                                           gTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTaa       >  1:615722/1‑140 (MQ=255)

                                                                                                                           gTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTaa       <  2:1284662/140‑1 (MQ=255)

                                                                                                                           gTCGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCCTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTaa       >  1:1018345/1‑140 (MQ=255)

                                                                                                                             cGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTAAac     >  1:1559892/1‑140 (MQ=255)

                                                                                                                             cGTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTAAac     >  1:252268/1‑140 (MQ=255)

                                                                                                                              gTTTAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTAAaca    >  2:787892/1‑140 (MQ=255)

                                                                                                                               tttAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTAAacac   >  2:1637560/1‑140 (MQ=255)

                                                                                                                                ttAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTAAACAcc  <  2:583612/140‑1 (MQ=255)

                                                                                                                                ttAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTAAACAcc  <  1:1677201/140‑1 (MQ=255)

                                                                                                                                ttAGGCGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTAAACAcc  <  1:836418/140‑1 (MQ=255)

GGCTAACCACGCCGCTTTTTTTACGTCTGCAATTTACCTTTCCAGTCTTCTTGCTCCACGTTCAGAGAGACGTTCGCATACTGCTGACCGTTGCTCGTTATTCAGCCTGACAGTATGGTTACTGTCGTTTAGACGTTGTGGGCGGCTCTCCTGAACTTTCTCCCGAAAAACCTGACGTTGTTCAGGTGATGCCGATTGAACACGCTGGCGGGCGTTATCACGTTGCTGTTGATTCAGTGGGCGCTGCTGTACTTTTTCCTTAAACACC  >  NC_000913/129374‑129641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A