Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 186,400 T→C T751A (ACC→GCC)  glnD ← PII uridylyltransferase/uridylyl removing enzyme

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913186,4000TC100.0% 307.0 / NA 83T751A (ACC→GCC) glnDPII uridylyltransferase/uridylyl removing enzyme
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (42/41);  total (42/41)

CGTAATTTGGCGGGTTGGCGACGGGGCTGCGGTGGCTGCCAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGTATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGCTCCAGATAAAAATCTCGGTGCCTC  >  NC_000913/186264‑186534
                                                                                                                                        |                                                                                                                                      
cGTAATTTGGCGGGTTGGCGACGGGGCTGCGGTGGCTGCCAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAGCCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATc                                                                                                                                     <  2:763572/140‑1 (MQ=255)
cGTAATTTGGCGGGTTGGCGACGGGGCTGCGGTGGCTGCCAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATc                                                                                                                                     <  1:975613/140‑1 (MQ=255)
cGTAATTTGGCGGGTTGGCGACGGGGCTGCGGTGGCTGCCAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATc                                                                                                                                     <  1:111712/140‑1 (MQ=255)
cGTAATTTGGCGGGTTGGCGACGGGGCTGCGGTGGCTGCCAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATc                                                                                                                                     <  1:1457942/140‑1 (MQ=255)
cGTAATTTGGCGGGTTGGCGACGGGGCTGCGGTGGCTGCCAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATc                                                                                                                                     >  1:1335904/1‑140 (MQ=255)
cGTAATTTGGCGGGTTGGCGACGGGGCTGCGGTGGCTGCCAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATc                                                                                                                                     <  1:1387059/140‑1 (MQ=255)
 gTAATTTGGCGGGTTGGCGACGGGGCTGCGGTGGCTGCCAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATcc                                                                                                                                    <  2:1347190/140‑1 (MQ=255)
  tAATTTGGCGGGTTGGCGACGGGGCTGCGGTGGCTGCCAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCa                                                                                                                                   >  1:1386271/1‑140 (MQ=255)
         gCGGGTTGGCGACGGGGCTGCGGTGGCTGCCAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCAt                                                                                                                            >  1:813390/1‑140 (MQ=255)
         gCGGGTTGGCGACGGGGCTGCGGTGGCTGCCAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCAt                                                                                                                            <  1:213155/140‑1 (MQ=255)
                   gACGGGGCTGCGGTGGCTGCCAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGa                                                                                                                  <  2:858165/140‑1 (MQ=255)
                                 ggCTGCCAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTtg                                                                                                    <  1:1282068/140‑1 (MQ=255)
                                  gCTGCCAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCTAGTGGTGAAAATTtgt                                                                                                   <  2:521300/140‑1 (MQ=255)
                                  gCTGCCAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTtgt                                                                                                   <  1:818479/140‑1 (MQ=255)
                                  gCTGCCAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTtgt                                                                                                   <  1:1269387/140‑1 (MQ=255)
                                       cAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGcgtc                                                                                              >  2:423101/1‑140 (MQ=255)
                                       cAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGcgtc                                                                                              <  1:1669680/140‑1 (MQ=255)
                                       cAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGcgtc                                                                                              >  2:1366919/1‑140 (MQ=255)
                                          cTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTg                                                                                           <  1:1275539/140‑1 (MQ=255)
                                            aCTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTtgt                                                                                                   >  1:835895/1‑130 (MQ=255)
                                            aCTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTtgt                                                                                                   <  2:835895/130‑1 (MQ=255)
                                            aCTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGaa                                                                                         <  2:143938/140‑1 (MQ=255)
                                                tGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTg                                                                                           <  1:1626521/134‑1 (MQ=255)
                                                tGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTg                                                                                           >  2:1626521/1‑134 (MQ=255)
                                                tGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACt                                                                                     >  1:873547/1‑140 (MQ=255)
                                                tGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACt                                                                                     >  2:70381/1‑140 (MQ=255)
                                                  cGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGAGCGTCGTGAACACTTa                                                                                   <  2:1335904/140‑1 (MQ=255)
                                                    tCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTaaa                                                                                 <  1:826414/140‑1 (MQ=255)
                                                        tACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTgc                                                                             >  1:1140124/1‑140 (MQ=255)
                                                         aCTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTgcg                                                                            <  1:860882/140‑1 (MQ=255)
                                                          ctagCTCCAGACCAAACCGAATCACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTgcgg                                                                           <  2:1105372/137‑1 (MQ=255)
                                                          cTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTgcgg                                                                           <  1:1366919/140‑1 (MQ=255)
                                                              cTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGaa                                                                                         <  1:360200/122‑1 (MQ=255)
                                                              cTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGaa                                                                                         >  2:360200/1‑122 (MQ=255)
                                                               tCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTc                                                                      <  1:423101/140‑1 (MQ=255)
                                                                  aGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTaa                                                                   >  1:103344/1‑140 (MQ=255)
                                                                  aGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCCCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTaa                                                                   >  1:33187/1‑140 (MQ=255)
                                                                    aCCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAAtt                                                                 >  1:1105155/1‑140 (MQ=255)
                                                                    aCCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAAtt                                                                 >  1:531070/1‑140 (MQ=255)
                                                                     ccAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTgcgg                                                                           >  1:223135/1‑129 (MQ=255)
                                                                     ccAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTgcgg                                                                           <  2:223135/129‑1 (MQ=255)
                                                                        aaCCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGc                                                             >  1:322168/1‑140 (MQ=255)
                                                                         aCCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGca                                                            >  2:304348/1‑140 (MQ=255)
                                                                                  ccTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGAcggcg                                                   <  2:322168/140‑1 (MQ=255)
                                                                                  ccTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGAcggcg                                                   <  2:813390/140‑1 (MQ=255)
                                                                                     cATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCa                                                >  2:558709/1‑140 (MQ=255)
                                                                                     cATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCa                                                >  1:1261972/1‑140 (MQ=255)
                                                                                     cATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCa                                                >  1:65763/1‑140 (MQ=255)
                                                                                      aTGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCaa                                               >  2:887571/1‑140 (MQ=255)
                                                                                       tGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCaaa                                              >  1:39537/1‑140 (MQ=255)
                                                                                       tGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCaaa                                              >  2:1533278/1‑140 (MQ=255)
                                                                                            aTCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGAt                                         >  2:850017/1‑140 (MQ=255)
                                                                                             tCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATa                                        >  2:84988/1‑140 (MQ=255)
                                                                                             tCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATa                                        >  1:1227786/1‑140 (MQ=255)
                                                                                               tGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAg                                      >  1:201595/1‑140 (MQ=255)
                                                                                                gCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAgg                                     <  1:558709/140‑1 (MQ=255)
                                                                                                gCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAgg                                     <  1:887571/140‑1 (MQ=255)
                                                                                                  ggACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGc                                   >  1:1570674/1‑140 (MQ=255)
                                                                                                        cGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCg                             >  1:172455/1‑140 (MQ=255)
                                                                                                        cGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCg                             >  1:1608875/1‑140 (MQ=255)
                                                                                                        cGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCg                             <  2:531070/140‑1 (MQ=255)
                                                                                                        cGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCg                             >  2:1277412/1‑140 (MQ=255)
                                                                                                        cGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCg                             >  2:1065686/1‑140 (MQ=255)
                                                                                                        cGGGTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCg                             >  1:69866/1‑140 (MQ=255)
                                                                                                           gTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGc                          >  2:1558816/1‑140 (MQ=255)
                                                                                                           gTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGc                          >  2:458376/1‑140 (MQ=255)
                                                                                                           gTTGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGc                          >  2:1189206/1‑140 (MQ=255)
                                                                                                             tGCCATCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGCTc                        <  1:84988/140‑1 (MQ=255)
                                                                                                                  tCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGCTCCAGAt                   <  2:65763/140‑1 (MQ=255)
                                                                                                                  tCGGGTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGGCCGGGGTCCAGAt                   >  2:1560881/1‑140 (MQ=255)
                                                                                                                     ggTTCCAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGCTCCAGATaaa                >  1:1190870/1‑140 (MQ=255)
                                                                                                                         ccAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGCTCCAGATAAAAAtc            >  2:230331/1‑140 (MQ=255)
                                                                                                                         ccAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGCTCCAGATAAAAAtc            >  1:1260249/1‑140 (MQ=255)
                                                                                                                          cAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGCTCCAGATAAAAAtct           <  2:1227786/140‑1 (MQ=255)
                                                                                                                          cAGCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGCTCCAGATAAAAAtct           <  2:873547/140‑1 (MQ=255)
                                                                                                                            gCACGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAGCAGATAAGGGCGGTCCGGGCTCCAGATAAAAATCTCg         <  2:1105155/140‑1 (MQ=255)
                                                                                                                              aCGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGCTCCAGATAAAAATCTCGGt       <  2:1386271/140‑1 (MQ=255)
                                                                                                                               cGATAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGCTCCAGATAAAAATCTCGGTg      <  2:1351866/140‑1 (MQ=255)
                                                                                                                                 aTAAAGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGCTCCAGATAAAAATCTCGGTGcc    >  2:257502/1‑140 (MQ=255)
                                                                                                                                   aaaGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGCTCCAGATAAAAATCTCGGTGCCTc  <  1:1533278/140‑1 (MQ=255)
                                                                                                                                   aaaGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGCTCCAGATAAAAATCTCGGTGCCTc  <  2:1608875/140‑1 (MQ=255)
                                                                                                                                   aaaGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGCTCCAGATAAAAATCTCGGTGCCTc  <  2:1140124/140‑1 (MQ=255)
                                                                                                                                   aaaGGCATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGCTCCAGATAAAAATCTCGGTGCCTc  <  1:651601/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                      
CGTAATTTGGCGGGTTGGCGACGGGGCTGCGGTGGCTGCCAGCTACTTTGCGTCAGTACTTGCTCCAGACCAAACCGAATAACCTCATGACGATCTGCGGACAGCGGGTTGCCATCGGGTTCCAGCACGATAAAGGTATCCATCGCCATACCGTCGCGAGTGGTGAAAATTTGTGCGTCGTGAACACTTAAATTGCGGCGGTCTAATTCGGCACAGACGGCGGCAAACAGATAAGGGCGGTCCGGGCTCCAGATAAAAATCTCGGTGCCTC  >  NC_000913/186264‑186534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A