Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,572,646	C→T	E853K (GAG→AAG)	pqqL ←	putative zinc peptidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,572,646	0	C	T	100.0%	513.3 / NA	141	E853K (GAG→AAG)	pqqL	putative zinc peptidase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (69/72); total (69/72)

Only 100 of 141 total aligned reads displayed.

TCCTGCTCAGTCCATGCTGCAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTCACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATGACTGATATCTTTGGCCTGAGGATCAACCGAGAGGCG  >  NC_000913/1572510‑1572778

    gCTCAGTCCATGCTGCAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATc                                                                                                                               >  1:182599/1‑140 (MQ=255)

    gCTCAGTCCATGCTGCAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATc                                                                                                                               >  1:979384/1‑140 (MQ=255)

       cAGTCCATGCTGCAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCt                                                                                                                            <  1:492976/140‑1 (MQ=255)

          tCCATGCTGCAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTa                                                                                                                         >  1:910651/1‑140 (MQ=255)

          tCCATGCTGCAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTa                                                                                                                         >  1:1246838/1‑140 (MQ=255)

              tgctgcAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCa                                                                                                                     <  1:419284/140‑1 (MQ=255)

              tgctgcAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCa                                                                                                                     >  2:67938/1‑140 (MQ=255)

              tgctgcAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCa                                                                                                                     <  1:983178/140‑1 (MQ=255)

              tgctgcAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCa                                                                                                                     <  2:1341433/140‑1 (MQ=255)

               gctgcAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAg                                                                                                                    >  2:1048862/1‑140 (MQ=255)

               gctgcAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAg                                                                                                                    >  1:318226/1‑140 (MQ=255)

               gctgcAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAg                                                                                                                    >  2:57832/1‑140 (MQ=255)

               gctgcAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAg                                                                                                                    >  1:1158380/1‑140 (MQ=255)

               gctgcAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAg                                                                                                                    >  1:1019085/1‑140 (MQ=255)

                   cAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGc                                                                                                                <  1:1673047/140‑1 (MQ=255)

                   cAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGc                                                                                                                <  1:1048862/140‑1 (MQ=255)

                   cAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGc                                                                                                                <  2:910651/140‑1 (MQ=255)

                    aGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCt                                                                                                               >  2:1589765/1‑140 (MQ=255)

                        tCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAAc                                                                                                           >  1:1698520/1‑140 (MQ=255)

                         cGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAAcc                                                                                                          <  2:706023/140‑1 (MQ=255)

                           tCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCAt                                                                                                        >  1:89206/1‑140 (MQ=255)

                            cATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATc                                                                                                       <  2:979384/140‑1 (MQ=255)

                             atatTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCa                                                                                                      <  2:89206/140‑1 (MQ=255)

                             atatTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCa                                                                                                      <  2:1656235/140‑1 (MQ=255)

                               atTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACt                                                                                                    <  2:1061234/140‑1 (MQ=255)

                                      aaGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCg                                                                                             <  1:683051/140‑1 (MQ=255)

                                      aaGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCg                                                                                             >  2:446055/1‑140 (MQ=255)

                                      aaGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCg                                                                                             >  1:794217/1‑140 (MQ=255)

                                      aaGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCg                                                                                             <  2:362255/140‑1 (MQ=255)

                                        gACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCt                                                                                           <  1:1510709/140‑1 (MQ=255)

                                         aCTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTa                                                                                          >  2:37033/1‑140 (MQ=255)

                                           tATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAAc                                                                                        <  2:1019085/140‑1 (MQ=255)

                                             tttACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGt                                                                                      >  2:1631280/1‑140 (MQ=255)

                                             tttACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGt                                                                                      <  1:37033/140‑1 (MQ=255)

                                                aCAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTaa                                                                                   <  2:1698520/140‑1 (MQ=255)

                                                aCAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTaa                                                                                   <  1:1316903/140‑1 (MQ=255)

                                                  aaTAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACa                                                                                 >  2:372746/1‑140 (MQ=255)

                                                   aTAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCTCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAg                                                                                >  1:624214/1‑140 (MQ=255)

                                                   aTAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAg                                                                                >  1:1142871/1‑140 (MQ=255)

                                                       tgtTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCTCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTtca                                                                            <  2:624214/140‑1 (MQ=255)

                                                       tgtTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCt                                                                                           >  1:783062/1‑125 (MQ=255)

                                                       tgtTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACa                                                                                 <  1:474883/135‑1 (MQ=255)

                                                       tgtTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACa                                                                                 >  2:474883/1‑135 (MQ=255)

                                                       tgtTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTtca                                                                            >  1:739038/1‑140 (MQ=255)

                                                       tgtTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTtca                                                                            <  2:794217/140‑1 (MQ=255)

                                                       tgtTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTtca                                                                            >  1:619585/1‑140 (MQ=255)

                                                       tgtTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTtca                                                                            >  2:71972/1‑140 (MQ=255)

                                                       tgtTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTtca                                                                            >  2:618742/1‑140 (MQ=255)

                                                         ttCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTaa                                                                                   <  2:1694219/131‑1 (MQ=255)

                                                           cGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTcatcat                                                                        >  2:923182/1‑140 (MQ=255)

                                                              tAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAAc                                                                                  >  2:74870/1‑127 (MQ=255)

                                                              tAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTtca                                                                            <  2:1082488/133‑1 (MQ=255)

                                                              tAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTtca                                                                            >  1:1082488/1‑133 (MQ=255)

                                                               aaTTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCg                                                                    <  1:67938/140‑1 (MQ=255)

                                                                aTTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATGCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGt                                                                   <  2:914837/140‑1 (MQ=255)

                                                                      gAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGt                                                             >  1:247466/1‑140 (MQ=255)

                                                                         cgctacgctGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGa                                                          <  2:312937/140‑1 (MQ=255)

                                                                          gctacgctGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGAc                                                         <  1:957328/140‑1 (MQ=255)

                                                                          gctacgctGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGAc                                                         <  1:923182/140‑1 (MQ=255)

                                                                          gctacgctGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGAc                                                         <  1:1705988/140‑1 (MQ=255)

                                                                          gctacgctGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGAc                                                         <  1:716310/140‑1 (MQ=255)

                                                                          gctacgctGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGAc                                                         <  1:632429/140‑1 (MQ=255)

                                                                          gctacgctGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGAc                                                         <  1:382213/140‑1 (MQ=255)

                                                                          gctacgctGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTAGAc                                                         <  1:71972/140‑1 (MQ=255)

                                                                            tacgctGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTc                                                                 >  1:1021371/1‑130 (MQ=255)

                                                                            tacgctGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTc                                                                 <  2:1021371/130‑1 (MQ=255)

                                                                              cgctGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGt                                                     >  2:672229/1‑140 (MQ=255)

                                                                                  gTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTaaaa                                                 <  2:971767/140‑1 (MQ=255)

                                                                                        tatCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGc                                           >  2:1423480/1‑140 (MQ=255)

                                                                                        tatCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGc                                           >  1:951028/1‑140 (MQ=255)

                                                                                         atCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCa                                          <  1:568365/140‑1 (MQ=255)

                                                                                         atCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCa                                          <  2:247466/140‑1 (MQ=255)

                                                                                           cGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTa                                                    <  1:355913/128‑1 (MQ=255)

                                                                                           cGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTa                                                    >  2:355913/1‑128 (MQ=255)

                                                                                           cGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCaaa                                        <  1:1658130/140‑1 (MQ=255)

                                                                                           cGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCaaa                                        >  2:82961/1‑140 (MQ=255)

                                                                                           cGAGGCTGCGCTAAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCaaa                                        <  2:866296/140‑1 (MQ=255)

                                                                                            gAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAAt                                       <  2:339901/140‑1 (MQ=255)

                                                                                             aGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATg                                      >  2:1168970/1‑140 (MQ=255)

                                                                                             aGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATg                                      >  1:149922/1‑140 (MQ=255)

                                                                                             aGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATg                                      >  1:1024049/1‑140 (MQ=255)

                                                                                             aGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATg                                      >  2:819314/1‑140 (MQ=255)

                                                                                             aGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATg                                      >  1:327582/1‑140 (MQ=255)

                                                                                                  gcgcTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATGACTGa                                 <  1:84026/140‑1 (MQ=255)

                                                                                                  gcgcTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATGACTGa                                 <  2:955371/140‑1 (MQ=255)

                                                                                                   cgcTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCaaa                                        <  2:1373555/132‑1 (MQ=255)

                                                                                                   cgcTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCaaa                                        >  1:1373555/1‑132 (MQ=255)

                                                                                                         aCGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATGACTGATATCttt                          <  2:1242516/140‑1 (MQ=255)

                                                                                                         aCGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATGACTGATATCttt                          <  1:895122/140‑1 (MQ=255)

                                                                                                         aCGTTTTGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATGACTGATATCttt                          <  2:951028/140‑1 (MQ=255)

                                                                                                             tttGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATGACTGATATCTTTGGcc                      <  1:238242/140‑1 (MQ=255)

                                                                                                             tttGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATGACTGATATCTTTGGcc                      <  1:365731/140‑1 (MQ=255)

                                                                                                               tGCTGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATGACTGATATCTTTGGCCTg                    <  2:222252/140‑1 (MQ=255)

                                                                                                                  tGGTATTCATTCAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATGACTGATATCTTTGGCCTGAgg                 >  2:545345/1‑140 (MQ=255)

                                                                                                                      attcattcAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATGACTGATATCTTTGGCCTGAGGATCa             >  1:603643/1‑140 (MQ=255)

                                                                                                                      attcattcAGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATGACTGATATCTTTGGCCTGAGGATCa             >  1:595497/1‑140 (MQ=255)

                                                                                                                           ttcaGTTCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATGACTGATATCTTTGGCCTGAGGATCAACCga        <  1:1168970/140‑1 (MQ=255)

                                                                                                                                ttCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATGACTGATATCTTTGGCCTGAGGATCAACCGAGAGGc   >  2:1315098/1‑140 (MQ=255)

                                                                                                                                 tCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATGACTGATATCTTTGGCCTGAGGATCAACCGAGAGGCg  <  2:595497/140‑1 (MQ=255)

                                                                                                                                 tCTTGCTTACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATGACTGATATCTTTGGCCTGAGGATCAACCGAGAGGCg  <  1:819314/140‑1 (MQ=255)

TCCTGCTCAGTCCATGCTGCAGGATCGTCATATTGAATAAGACTATTTACAATAGTGTTCGCTAATTGTTGAACGCTACGCTGTTGGATATCGAGGCTGCGCTGAACGTTTTGCTGGTATTCATTCAGTTCTTGCTCACTGATCCCTTTAGCCAGACGCTTAACCATCACTTCATTCGCTAACGTTAACAGTTCATCATGTCGTTCTGGTTGACAAGTAAAAGCCAGCAAATGACTGATATCTTTGGCCTGAGGATCAACCGAGAGGCG  >  NC_000913/1572510‑1572778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A