Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,798,394 T→C P183P (CCA→CCG)  pheS ← phenylalanine‑‑tRNA ligase subunit alpha

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,798,3940TC100.0% 292.9 / NA 79P183P (CCA→CCG) pheSphenylalanine‑‑tRNA ligase subunit alpha
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (33/46);  total (33/46)

TGCAGCGTGCCTTTCAGGTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGTGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGGGTGGTGACCAGGAATGTTCAGAGCATCGAAGTTAT  >  NC_000913/1798260‑1798530
                                                                                                                                      |                                                                                                                                        
tGCAGCGTGCCTTTCAGGTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATcggcgg                                                                                                                                        >  2:287747/1‑137 (MQ=255)
tGCAGCGTGCCTTTCAGGTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGgctg                                                                                                                                     <  2:1581447/140‑1 (MQ=255)
 gCAGCGTGCCTTTCAGGTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGgctgc                                                                                                                                    <  1:1019455/140‑1 (MQ=255)
 gCAGCGTGCCTTTCAGGTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGgctgc                                                                                                                                    <  2:1084916/140‑1 (MQ=255)
 gCAGCGTGCCTTTCAGGTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGgctgc                                                                                                                                    <  1:1548392/140‑1 (MQ=255)
  cAGCGTGCCTTTCAGGTTGGTAAAGCTGACGTTGGTATCAACAATCAGACCTTCCATCTGTTGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGgctgct                                                                                                                                   <  2:648469/140‑1 (MQ=255)
   aGCGTGCCTTTCAGGTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGctgctg                                                                                                                                  >  1:1414741/1‑140 (MQ=255)
   aGCGTGCCTTTCAGGTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGctgctg                                                                                                                                  >  1:287019/1‑140 (MQ=255)
      gTGCCTTTCAGGTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGc                                                                                                                               <  2:725981/140‑1 (MQ=255)
       tGCCTTTCAGGTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGctgctg                                                                                                                                  <  2:86329/136‑1 (MQ=255)
       tGCCTTTCAGGTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGctgctg                                                                                                                                  >  1:86329/1‑136 (MQ=255)
       tGCCTTTCAGGTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCt                                                                                                                              >  1:1411697/1‑140 (MQ=255)
         ccTTTCAGGTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCttt                                                                                                                            <  2:810540/140‑1 (MQ=255)
           tttCAGGTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCa                                                                                                                          <  1:1435099/140‑1 (MQ=255)
                ggTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGTATCGGCGGCTGCTGGGCTTTCATGGTg                                                                                                                     <  2:1392173/140‑1 (MQ=255)
                ggTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTg                                                                                                                     <  2:828930/140‑1 (MQ=255)
                ggTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTg                                                                                                                     <  2:1411697/140‑1 (MQ=255)
                   tGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCgg                                                                                                                  <  2:287019/140‑1 (MQ=255)
                    ggTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGa                                                                                                                 <  2:753298/140‑1 (MQ=255)
                           cTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTAc                                                                                                          >  2:18171/1‑140 (MQ=255)
                               tGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCa                                                                                                      >  1:1179900/1‑140 (MQ=255)
                                   ggTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAgg                                                                                                  <  1:94096/140‑1 (MQ=255)
                                   ggTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAgg                                                                                                  <  1:1122400/140‑1 (MQ=255)
                                   ggTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAgg                                                                                                  <  1:82198/140‑1 (MQ=255)
                                   ggTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAgg                                                                                                  <  2:1480453/140‑1 (MQ=255)
                                     tATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTc                                                                                                >  1:950250/1‑140 (MQ=255)
                                     tATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTc                                                                                                >  1:535089/1‑140 (MQ=255)
                                              tCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGt                                                                                                 <  1:1093246/130‑1 (MQ=255)
                                              tCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGt                                                                                                 >  2:1093246/1‑130 (MQ=255)
                                              tCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTA‑‑‑GTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGGCTGGGTACgcagc                                                                                    >  1:101273/1‑140 (MQ=255)
                                                   ccTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGcagcag                                                                                  >  2:31109/1‑140 (MQ=255)
                                                      tCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACg                                                                                        <  2:270305/131‑1 (MQ=255)
                                                      tCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACg                                                                                        >  1:270305/1‑131 (MQ=255)
                                                      tCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCg                                                                               >  2:1022558/1‑140 (MQ=255)
                                                            tGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAgt                                                                         >  1:535870/1‑140 (MQ=255)
                                                            tGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGGCTGGGGACGCAGCAGGCGGGGAgg                                                                         >  2:1526874/1‑139 (MQ=255)
                                                               tGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTc                                                                      <  2:535089/140‑1 (MQ=255)
                                                               tGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTc                                                                      >  2:910991/1‑140 (MQ=255)
                                                               tGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTc                                                                      <  2:236655/140‑1 (MQ=255)
                                                               tGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTc                                                                      <  2:950250/140‑1 (MQ=255)
                                                                  aaCATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGcagcag                                                                                  <  2:1105720/125‑1 (MQ=255)
                                                                  aaCATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGcagcag                                                                                  >  1:1105720/1‑125 (MQ=255)
                                                                        ggCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGGCTGGGTACGCAGCAGGCGGGGAGGGTCAAACCAGaa                                                             >  2:1459405/1‑140 (MQ=255)
                                                                         gCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGaaa                                                            <  1:1459405/140‑1 (MQ=255)
                                                                         gCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGaaa                                                            <  1:390113/140‑1 (MQ=255)
                                                                             gtgAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAgtgt                                                        <  1:31109/140‑1 (MQ=255)
                                                                                      gTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAg                                               >  2:1089451/1‑140 (MQ=255)
                                                                                      gTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAg                                               >  2:234862/1‑140 (MQ=255)
                                                                                      gTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGGAGGGGCAAAACAGAAAATGTCGTGGGCAg                                               >  2:434711/1‑140 (MQ=255)
                                                                                         gTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAgcgc                                            <  2:1198257/140‑1 (MQ=255)
                                                                                         gTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGGAGTGTCAAACCAGAAAGTGTCGTGGTCAgcgc                                            >  1:1198257/1‑140 (MQ=255)
                                                                                           aGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAgcgcgc                                          >  1:850556/1‑140 (MQ=255)
                                                                                           aGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGGAGTGTCAAACCAGAAAGTGTCGTGGTCAgcgcgc                                          >  2:1184087/1‑140 (MQ=255)
                                                                                            gTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAgcgcgcg                                         >  2:300540/1‑140 (MQ=255)
                                                                                            gTCGTTACGATAAACACGGCCAGGCGCGATGATACCAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAgcgcgcg                                         <  2:1179900/140‑1 (MQ=255)
                                                                                             tCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAgcgcgcgc                                        <  1:1022558/140‑1 (MQ=255)
                                                                                                ttACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCgg                                     >  1:1346474/1‑140 (MQ=255)
                                                                                                 tACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCggg                                    <  2:1346474/140‑1 (MQ=255)
                                                                                                 tACGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGGAGGGTCAAACCAGAAAGTGGCGTGGTCAGCGCGCGCCggg                                    >  2:291722/1‑140 (MQ=255)
                                                                                                   cGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGggtg                                  <  1:434711/140‑1 (MQ=255)
                                                                                                   cGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGggtg                                  <  1:18171/140‑1 (MQ=255)
                                                                                                   cGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGggtg                                  <  2:1414741/140‑1 (MQ=255)
                                                                                                   cGATAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGggtg                                  <  1:1535647/140‑1 (MQ=255)
                                                                                                     aTAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGggtggg                                >  1:129749/1‑139 (MQ=255)
                                                                                                     aTAAACACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGGAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCggggggg                                >  2:738973/1‑139 (MQ=255)
                                                                                                        aaCACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGGGTGGTGAc                             <  2:850556/140‑1 (MQ=255)
                                                                                                        aaCACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGGGTGGTGAc                             <  1:469469/140‑1 (MQ=255)
                                                                                                        aaCACGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGGGTGGTGAc                             <  2:535870/140‑1 (MQ=255)
                                                                                                           acGGCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGGGTGGTGACCAg                          <  1:291722/140‑1 (MQ=255)
                                                                                                              gCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGGGTGGTGACCa                           >  1:530071/1‑136 (MQ=255)
                                                                                                              gCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGGGTGGTGACCa                           <  2:530071/136‑1 (MQ=255)
                                                                                                              gCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGGGTGGTGACCAGGaa                       >  1:1581156/1‑140 (MQ=255)
                                                                                                              gCCAGGCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGGAGTGTCAAACCAGAAAGGGTCGTGGTCAGCGCGCGCCGGGTGGTGACCAGGaa                       >  1:875111/1‑140 (MQ=255)
                                                                                                                  ggCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGGGTGGTGACCAGGAATGtt                   <  1:234862/140‑1 (MQ=255)
                                                                                                                  ggCGCGATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGGCCAACCCGAAAGAGTCGTGGTCAGCGCGCGCCGGGTGGTGGCCAGGAATGtt                   >  2:56070/1‑140 (MQ=255)
                                                                                                                      cgATGATACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGGGTGGTGACCAGGAATGTTCaga               <  1:910991/140‑1 (MQ=255)
                                                                                                                          gatACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGGGTGGTGACCAGGAATGTTCAGAGCAt           <  2:1581156/140‑1 (MQ=255)
                                                                                                                          gatACGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTAGTGGTCAGCGCGCGCCGGGTGGTGACCAGGAATGTTCAGAGCAt           <  1:1571126/140‑1 (MQ=255)
                                                                                                                              cGAATCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGGGTGGTGACCAGGAATGTTCAGAGCATCGaa       <  2:129749/140‑1 (MQ=255)
                                                                                                                                  tCGGCGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGGGTGGTGACCAGGAATGTTCAGAGCATCGAAGTTa   <  1:70039/140‑1 (MQ=255)
                                                                                                                                   cggcggCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGCACGCAGCAGGCGGGCAGTGGCAAAACAAAAAGAGGCGTTGGCACCGCGCGGCGGGTGGTGGACAGGAAAGTTTAGAGCACCGAAGTTAt  >  2:1571126/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                        
TGCAGCGTGCCTTTCAGGTTGGTAAAGCTGATGTTGGTATCAACAATCAGACCTTCCATCTGATGGAACATCGGCGTGTGAGTCTGGTCGTAGTCGTTACGATAAACACGGCCAGGCGCGATGATACGAATCGGTGGCTGCTGGGCTTTCATGGTGCGGATCTGTACGCCAGAGGTCTGGGTACGCAGCAGGCGGGTAGTGTCAAACCAGAAAGTGTCGTGGTCAGCGCGCGCCGGGTGGTGACCAGGAATGTTCAGAGCATCGAAGTTAT  >  NC_000913/1798260‑1798530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A