Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,818,550	(C)_7→6	intergenic (‑50/+55)	chbF ← / ← chbR	monoacetylchitobiose‑6‑phosphate hydrolase/DNA‑binding transcriptional dual regulator ChbR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,818,544	0	C	.	100.0%	419.0 / NA	97	intergenic (‑44/+61)	chbF/chbR	monoacetylchitobiose‑6‑phosphate hydrolase/DNA‑binding transcriptional dual regulator ChbR
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (50/47); total (50/47)

Only 100 of 113 total aligned reads displayed.

AATTCGTGATAACGCTTAATAAATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGGACGTTAATTTCTTAAACGTTTTAA  >  NC_000913/1818409‑1818678

aaTTCGTGATACCGCTTAATAAATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGccccc                                                                                                                                    <  2:401451/140‑1 (MQ=255)

aaTTCGTGATAACGCTTAATAAATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGccccc                                                                                                                                    <  2:757971/140‑1 (MQ=255)

aaTTCGTGATAACGCTTAATAAATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGccccc                                                                                                                                    <  2:1150485/140‑1 (MQ=255)

aaTTCGTGATAACGCTTAATAAATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGccccc                                                                                                                                    <  2:669606/140‑1 (MQ=255)

aaTTCGTGATAACGCTTAATAAATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGccccc                                                                                                                                    <  2:149080/140‑1 (MQ=255)

   tCGTGATAACGCTTAATAAATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGccccccgg                                                                                                                                 <  1:1595776/140‑3 (MQ=255)

     gTGATAACGCTTAATAAATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCTCCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGccccccggac                                                                                                                               <  1:1666933/140‑5 (MQ=255)

     gTGATAACGCTTAATAAATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGccccccggac                                                                                                                               <  2:348398/140‑5 (MQ=255)

         tAACGCTTAATAAATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACataa                                                                                                                          >  2:569278/1‑140 (MQ=255)

            cGCTTAATAAATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACataaata                                                                                                                       >  2:214560/1‑140 (MQ=255)

              cTTAATAAATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGccccc                                                                                                                                    >  1:318635/1‑126 (MQ=255)

              cTTAATAAATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGccccc                                                                                                                                    <  2:318635/126‑1 (MQ=255)

                taataaATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATcc                                                                                                                   >  2:1652169/1‑140 (MQ=255)

                taataaATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATcc                                                                                                                   >  1:637271/1‑140 (MQ=255)

                taataaATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATcc                                                                                                                   <  1:1329859/140‑1 (MQ=255)

                 aataaATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGccccccggac                                                                                                                               >  1:472887/1‑124 (MQ=255)

                 aataaATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGccccccggac                                                                                                                               <  2:472887/128‑5 (MQ=255)

                     aaTCGTTCCATTAACACCGGGGTATAGCTGCTCCCGCCCCCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCaa                                                                                                              <  2:251201/140‑1 (MQ=255)

                     aaTCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCaa                                                                                                              <  1:417961/140‑1 (MQ=255)

                     aaTCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCaa                                                                                                              <  2:1515470/140‑1 (MQ=255)

                     aaTCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCaa                                                                                                              <  1:1286485/140‑1 (MQ=255)

                     aaTCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CACCCCGGACATAAATAATCCAGCaa                                                                                                              <  1:923183/140‑1 (MQ=255)

                       tCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACa                                                                                                            <  1:741896/140‑1 (MQ=255)

                        ccTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAg                                                                                                           >  1:554452/1‑140 (MQ=255)

                          ttCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGa                                                                                                         <  2:554452/140‑1 (MQ=255)

                          ttCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGa                                                                                                         <  1:699984/140‑1 (MQ=255)

                           tCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATcc                                                                                                                   <  2:1212979/129‑1 (MQ=255)

                           tCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATcc                                                                                                                   >  1:1212979/1‑129 (MQ=255)

                           tCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGc                                                                                                                >  2:1481542/1‑132 (MQ=255)

                           tCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGAc                                                                                                        >  1:654698/1‑140 (MQ=255)

                           tCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGAc                                                                                                        >  2:1262964/1‑140 (MQ=255)

                           tCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGAc                                                                                                        <  1:569278/140‑1 (MQ=255)

                           tCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGAc                                                                                                        >  2:344284/1‑140 (MQ=255)

                           tCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGATCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGc                                                                                                                <  1:1481542/132‑1 (MQ=255)

                            ccAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACa                                                                                                       >  2:1166235/1‑140 (MQ=255)

                            ccAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACa                                                                                                       <  2:753664/140‑1 (MQ=255)

                            ccAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACa                                                                                                       <  2:745362/140‑1 (MQ=255)

                            ccAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACa                                                                                                       <  1:1153854/140‑1 (MQ=255)

                               gTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGat                                                                                                    <  1:250039/140‑1 (MQ=255)

                               gTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGat                                                                                                    >  1:1582765/1‑140 (MQ=255)

                                tAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGata                                                                                                   <  1:1559569/140‑1 (MQ=255)

                                    tCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATAtgtg                                                                                               <  1:1166235/140‑1 (MQ=255)

                                     ccGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGa                                                                                              >  2:365450/1‑140 (MQ=255)

                                      cGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGaa                                                                                             <  2:459480/140‑1 (MQ=255)

                                      cGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGaa                                                                                             <  2:1118370/140‑1 (MQ=255)

                                       ggaatatgGCTGATCCCGCCACCAATAGTGGCGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGCGCCCCCCGACATAAATAACCCAGCAACAGGACAGATATGTGaa                                                                                             <  2:1634013/136‑1 (MQ=255)

                                        gggTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAAtt                                                                                           >  1:519350/1‑140 (MQ=255)

                                          gTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGt                                                                                         <  2:519350/140‑1 (MQ=255)

                                          gTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGt                                                                                         <  2:225285/140‑1 (MQ=255)

                                           tataGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTc                                                                                        <  1:1652169/140‑1 (MQ=255)

                                           tataGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTc                                                                                        <  1:365450/140‑1 (MQ=255)

                                                  gctCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGtata                                                                                 <  1:766974/140‑1 (MQ=255)

                                                   ctCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATaa                                                                                >  1:1706449/1‑140 (MQ=255)

                                                   ctCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATaa                                                                                >  1:1307344/1‑140 (MQ=255)

                                                   ctCCCGCCACCAAAAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGt                                                                                         >  1:18128/1‑131 (MQ=255)

                                                   ctCCCGCCACCAAAAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGt                                                                                         <  2:18128/131‑1 (MQ=255)

                                                    tCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAAc                                                                               <  2:1582765/140‑1 (MQ=255)

                                                    tCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAAc                                                                               <  2:731213/140‑1 (MQ=255)

                                                     cccGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTc                                                                                        >  1:413897/1‑130 (MQ=255)

                                                      ccGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGa                                                                             <  1:1023433/140‑1 (MQ=255)

                                                       cGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAgg                                                                                     <  1:614178/131‑1 (MQ=255)

                                                       cGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAgg                                                                                     >  2:614178/1‑131 (MQ=255)

                                                         ccaccaATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACtt                                                                          <  1:214560/140‑1 (MQ=255)

                                                          caccaATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTa                                                                         <  1:1251522/140‑1 (MQ=255)

                                                          caccaATAGTGACGACTCTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTa                                                                         <  2:1523772/140‑1 (MQ=255)

                                                                tAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATACGTGAATTGTCAGGTATAACGACTTACTGAtt                                                                   >  2:1495101/1‑140 (MQ=255)

                                                                     acgacTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAAtt                                                              >  1:1469911/1‑140 (MQ=255)

                                                                      cgacTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTc                                                             >  2:101456/1‑140 (MQ=255)

                                                                      cgacTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTc                                                             >  1:1669289/1‑140 (MQ=255)

                                                                       gacTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCa                                                            >  1:848177/1‑140 (MQ=255)

                                                                       gacTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCa                                                            >  1:396859/1‑140 (MQ=255)

                                                                        acTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACCGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAg                                                           >  2:410751/1‑140 (MQ=255)

                                                                               aTTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAAttt                                                    >  1:1454613/1‑140 (MQ=255)

                                                                                      gCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGa                                             >  2:753754/1‑140 (MQ=255)

                                                                                       cTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTAAATTTCTTACGAt                                            <  2:1175789/140‑1 (MQ=255)

                                                                                       cTCATAATTTCTCCCTTCAGTACAGAATACCGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGAt                                            <  1:410751/140‑1 (MQ=255)

                                                                                             aTTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGctct                                      <  2:1454613/140‑1 (MQ=255)

                                                                                                tctcCCTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAg                                   <  2:654698/140‑1 (MQ=255)

                                                                                                    ccTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGt                               >  1:162802/1‑140 (MQ=255)

                                                                                                     cTTCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTa                              <  1:1706393/140‑1 (MQ=255)

                                                                                                      ttCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATa                                           <  2:358051/126‑1 (MQ=255)

                                                                                                       tCAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTaaa                            <  1:753754/140‑1 (MQ=255)

                                                                                                        cAGTACAGAATACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAg                           >  2:448134/1‑140 (MQ=255)

                                                                                                                  tACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGTACGTTAAtt                 >  1:95840/1‑140 (MQ=255)

                                                                                                                  tACTGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGGACGTTAAtt                 >  1:390136/1‑140 (MQ=255)

                                                                                                                     tGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGGACGTTAATTTCt              >  1:1511645/1‑140 (MQ=255)

                                                                                                                     tGATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGGACGTTAATTTCt              >  1:1381553/1‑140 (MQ=255)

                                                                                                                      gATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGGACGTTAATTTCtt             <  2:530984/140‑1 (MQ=255)

                                                                                                                      gATATCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCCTACGATAGCTCTTAGGCGTAAAGGACGTTAATTTCtt             <  2:1511645/140‑1 (MQ=255)

                                                                                                                        tatCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGGACGTTAATTTCTTaa           >  2:1565839/1‑140 (MQ=255)

                                                                                                                          tCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGGACGTTAATTTCTTa            >  2:1131506/1‑137 (MQ=255)

                                                                                                                          tCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGGACGTTAATTTCTTa            <  1:1131506/137‑1 (MQ=255)

                                                                                                                          tCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGGACGTTAATTTCTTAAAc         >  1:712368/1‑140 (MQ=255)

                                                                                                                          tCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGGACGTTAATTTCTTAAAc         >  2:1143499/1‑140 (MQ=255)

                                                                                                                          tCTGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGGACGTTAATTTCTTAAAc         >  1:1200527/1‑140 (MQ=255)

                                                                                                                            tGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGGACGTTAATTTCTTAAACGt       >  1:175467/1‑140 (MQ=255)

                                                                                                                            tGGCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGGACGTTAATTTCTTAAACGt       >  1:1224999/1‑140 (MQ=255)

                                                                                                                              gCATATCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGGACGTTAATTTCTTAAACGttt     >  2:1434539/1‑140 (MQ=255)

                                                                                                                                 tatCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGGACGTTAATTTCTTAAACGTTTtaa  >  1:1642325/1‑140 (MQ=255)

                                                                                                                                 tatCTG‑CCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGGACGTTAATTTCTTAAACGTTTtaa  >  1:549634/1‑140 (MQ=255)

AATTCGTGATAACGCTTAATAAATCCTTCCAGTAACTCCGGGGTATAGCTGCTCCCGCCACCAATAGTGACGACTTTTAATTTCTGGCTCATAATTTCTCCCTTCAGTACAGAATACTGATATCTGGCATATCTGCCCCCCCGGACATAAATAATCCAGCAACAGGACAGATATGTGAATTGTCAGGTATAACGACTTACTGATTAAATTCAGTCAATTTCTTACGATAGCTCTTAGGCGTAAAGGACGTTAATTTCTTAAACGTTTTAA  >  NC_000913/1818409‑1818678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A