Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,878,046 G→A S111N (AGC→AAC)  dgcP → diguanylate cyclase DgcP

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,878,0460GA100.0% 294.6 / NA 83S111N (AGC→AAC) dgcPdiguanylate cyclase DgcP
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (41/42);  total (41/42)

AGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAGCACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGATTGCACAATATATTCAAAAA  >  NC_000913/1877911‑1878182
                                                                                                                                       |                                                                                                                                        
agaATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACg                                                                                                                                      >  2:1488190/1‑140 (MQ=255)
            tctcGTGGGATTACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTa                                                                                                                          >  1:1713219/1‑140 (MQ=255)
              tcGTGGGATTACTCGTTATGCAAACGCGCCATTGATGAAAACTGCCTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTAcc                                                                                                                        >  1:1453148/1‑140 (MQ=255)
                gTGGGATTACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCgg                                                                                                                      <  2:1453148/140‑1 (MQ=255)
                gTGGGATTACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCgg                                                                                                                      <  2:422376/140‑1 (MQ=255)
                gTGGGATTACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCgg                                                                                                                      <  2:643483/140‑1 (MQ=255)
                gTGGGATTACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCgg                                                                                                                      <  2:840560/140‑1 (MQ=255)
                gTGGGATTACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCgg                                                                                                                      <  2:783672/140‑1 (MQ=255)
                 tGGGATTACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCgga                                                                                                                     <  1:870388/140‑1 (MQ=255)
                  gggATTACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTTCCggat                                                                                                                    <  2:690857/140‑1 (MQ=255)
                  gggATTACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCggat                                                                                                                    <  1:848733/140‑1 (MQ=255)
                   ggATTACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCggatg                                                                                                                   <  2:1003307/140‑1 (MQ=255)
                     aTTACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCggatgga                                                                                                                 <  2:1713219/140‑1 (MQ=255)
                      ttACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCggatggat                                                                                                                <  1:1563079/140‑1 (MQ=255)
                      ttACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCggatggat                                                                                                                <  2:561730/140‑1 (MQ=255)
                      ttACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCggatggat                                                                                                                <  2:950761/140‑1 (MQ=255)
                      ttACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCggatggat                                                                                                                <  1:588738/140‑1 (MQ=255)
                      ttACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCggatggat                                                                                                                <  1:451614/140‑1 (MQ=255)
                       tACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATc                                                                                                               >  2:26252/1‑140 (MQ=255)
                               aTGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATg                                                                                                       >  1:838328/1‑140 (MQ=255)
                                 gCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGc                                                                                                     >  1:106159/1‑140 (MQ=255)
                                       gcgcCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCtt                                                                                               >  1:500492/1‑140 (MQ=255)
                                        cgcCATTTATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCttt                                                                                              >  2:242610/1‑140 (MQ=255)
                                        cgcCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCttt                                                                                              >  2:1302249/1‑140 (MQ=255)
                                          ccATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTgc                                                                                            >  1:425446/1‑140 (MQ=255)
                                            aTTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCCTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTgcgc                                                                                          >  1:867855/1‑140 (MQ=255)
                                             ttGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACCGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGcgcc                                                                                         <  1:873069/140‑1 (MQ=255)
                                               gatgaAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGcgccgc                                                                                       <  2:945270/140‑1 (MQ=255)
                                               gatgaAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGcgccgc                                                                                       <  2:838328/140‑1 (MQ=255)
                                                     aaCTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCcagcag                                                                                 >  2:287036/1‑140 (MQ=255)
                                                     aaCTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCcagcag                                                                                 >  1:1630951/1‑140 (MQ=255)
                                                       cTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTg                                                                               >  1:467215/1‑140 (MQ=255)
                                                       cTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTg                                                                               >  2:621287/1‑140 (MQ=255)
                                                       cTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTg                                                                               >  2:226038/1‑140 (MQ=255)
                                                       cTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTg                                                                               >  1:429121/1‑140 (MQ=255)
                                                            ttttCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAg                                                                          <  2:500492/140‑1 (MQ=255)
                                                              ttCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAgcg                                                                        <  2:402784/140‑1 (MQ=255)
                                                               tCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAgcgc                                                                       >  1:918851/1‑140 (MQ=255)
                                                                cAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGcc                                                                      <  2:1630951/140‑1 (MQ=255)
                                                                             cccGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAAcg                                                         >  2:211940/1‑140 (MQ=255)
                                                                                     ttGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAAc                                                 >  1:121401/1‑140 (MQ=255)
                                                                                     ttGGGGTGACTGTATTGCGGCACGCAATCTTGACATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAAcgcg                                                       >  2:648533/1‑134 (MQ=255)
                                                                                     ttGGGGTGACTGTATTGCGGCACGCAATCTTGACATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAAcgcg                                                       <  1:648533/134‑1 (MQ=255)
                                                                                           tGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGttt                                           <  2:106159/140‑1 (MQ=255)
                                                                                             aCTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTa                                         >  2:245279/1‑140 (MQ=255)
                                                                                              cTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAAc                                                 >  2:625277/1‑131 (MQ=255)
                                                                                              cTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAAc                                                 <  1:625277/131‑1 (MQ=255)
                                                                                                  aTTGCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGAAACAGGTTTTACAGtt                                    >  1:766854/1‑140 (MQ=255)
                                                                                                     gCGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTAtt                                 >  1:1368290/1‑140 (MQ=255)
                                                                                                      cGGCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTc                                <  1:1488190/140‑1 (MQ=255)
                                                                                                       ggCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGtt                                    >  2:954967/1‑135 (MQ=255)
                                                                                                       ggCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGtt                                    <  1:954967/135‑1 (MQ=255)
                                                                                                       ggCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCg                               >  1:1676638/1‑140 (MQ=255)
                                                                                                        gCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGc                              >  1:397840/1‑140 (MQ=255)
                                                                                                        gCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGc                              >  1:533456/1‑140 (MQ=255)
                                                                                                        gCACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGc                              >  2:177286/1‑140 (MQ=255)
                                                                                                         cACGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGcc                             >  1:580301/1‑140 (MQ=255)
                                                                                                           cGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTc                                <  2:319959/135‑1 (MQ=255)
                                                                                                           cGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTc                                >  1:319959/1‑135 (MQ=255)
                                                                                                           cGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCgg                           >  2:702444/1‑140 (MQ=255)
                                                                                                           cGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCgg                           >  2:1706705/1‑140 (MQ=255)
                                                                                                           cGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCgg                           <  1:26252/140‑1 (MQ=255)
                                                                                                           cGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCgg                           <  2:1226000/140‑1 (MQ=255)
                                                                                                           cGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCgg                           >  1:465482/1‑140 (MQ=255)
                                                                                                           cGCAATCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGAAACAGGTTTTACAGTTATTCGCCgg                           <  2:766854/140‑1 (MQ=255)
                                                                                                              aaTCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACt                        <  2:1434896/140‑1 (MQ=255)
                                                                                                                tCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGa                      <  1:403529/140‑1 (MQ=255)
                                                                                                                tCTTGGCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGa                      <  2:1676638/140‑1 (MQ=255)
                                                                                                                     gCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGa                      <  2:142125/135‑1 (MQ=255)
                                                                                                                     gCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGa                      >  1:142125/1‑135 (MQ=255)
                                                                                                                     gCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGATTGca                 >  1:127157/1‑140 (MQ=255)
                                                                                                                     gCATCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGATTGca                 <  2:1368290/140‑1 (MQ=255)
                                                                                                                       aTCACCACATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGATTGcaca               <  2:867855/140‑1 (MQ=255)
                                                                                                                         caccacATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGATTGCACAat             <  1:287036/140‑1 (MQ=255)
                                                                                                                          accacATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGATTg                   >  1:220134/1‑133 (MQ=255)
                                                                                                                          accacATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGATTg                   <  2:220134/133‑1 (MQ=255)
                                                                                                                          accacATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGATTGc                  <  2:1571938/134‑1 (MQ=255)
                                                                                                                          accacATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGATTGc                  >  1:1571938/1‑134 (MQ=255)
                                                                                                                          accacATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGATTGCACAata            >  2:719183/1‑140 (MQ=255)
                                                                                                                          accacATTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGATTGCACAata            <  2:918851/140‑1 (MQ=255)
                                                                                                                              caTTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGATTGCACAATATAtt        <  2:467215/140‑1 (MQ=255)
                                                                                                                               aTTTCTGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGATTGCACAATATATTc       >  2:635149/1‑140 (MQ=255)
                                                                                                                                    tGAACACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGATTGCACAATATATTCaaaaa  <  1:635149/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                        
AGAATTTTACCGTCTCGTGGGATTACTCGTTATGCAAACGCGCCATTGATGAAAACTGCTTTTTCAGCGATGAAGTCCCCGACCGTTGGGGTGACTGTATTGCGGCACGCAATCTTGGCATCACCACATTTCTGAGCACGCCAATTCACTTACCGGATGGATCATTCTATGGCACGCTTTGCGCCGCCAGCAGTGAGAAGCGCCAGTGGAGTGAACGCGCGGAACAGGTTTTACAGTTATTCGCCGGACTGATTGCACAATATATTCAAAAA  >  NC_000913/1877911‑1878182

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A