Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,888,839	A→G	I303T (ATC→ACC)	fadD ←	fatty acyl‑CoA synthetase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,888,839	0	A	G	100.0%	266.6 / NA	72	I303T (ATC→ACC)	fadD	fatty acyl‑CoA synthetase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (37/35); total (37/35)

GTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGATAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGCAAAAATGTGATACAGCG  >  NC_000913/1888705‑1888974

gTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCg                                                                                                                                    >  2:891860/1‑140 (MQ=255)

         aaCGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCgg                                                                                                                                   <  2:185250/132‑1 (MQ=255)

         aaCGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCgg                                                                                                                                   >  1:185250/1‑132 (MQ=255)

           cGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGata                                                                                                                         >  1:46665/1‑140 (MQ=255)

                     ccacTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAAc                                                                                                               >  2:1359500/1‑140 (MQ=255)

                     ccacTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAAc                                                                                                               >  1:732901/1‑140 (MQ=255)

                       acTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAActc                                                                                                             <  1:820803/140‑1 (MQ=255)

                        cTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAActct                                                                                                            >  1:1487134/1‑140 (MQ=255)

                        cTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAActct                                                                                                            >  2:483348/1‑140 (MQ=255)

                             tgcACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCt                                                                                                                  >  2:1507291/1‑129 (MQ=255)

                             tgcACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCt                                                                                                                  <  1:1507291/129‑1 (MQ=255)

                             tgcACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTAc                                                                                                       <  1:1270355/140‑1 (MQ=255)

                             tgcACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTAc                                                                                                       <  2:732901/140‑1 (MQ=255)

                             tgcACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTAc                                                                                                       <  1:1466804/140‑1 (MQ=255)

                              gcACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTAcc                                                                                                      <  1:688632/140‑1 (MQ=255)

                                 cTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAAc                                                                                                   >  1:845616/1‑140 (MQ=255)

                                 cTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAAc                                                                                                   >  1:462876/1‑140 (MQ=255)

                                  tGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAAcc                                                                                                  <  1:2524/140‑1 (MQ=255)

                                      aTCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTgg                                                                                              >  2:699627/1‑140 (MQ=255)

                                         ccACCGCCTGCGGAAAGATGCAGACTGGAAAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAat                                                                                           <  2:1017819/140‑1 (MQ=255)

                                          cACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAata                                                                                          <  1:660631/140‑1 (MQ=255)

                                              gCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTAcc                                                                                                      >  1:3070/1‑124 (MQ=255)

                                              gCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTAcc                                                                                                      <  2:3070/124‑1 (MQ=255)

                                               ccTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATcgcg                                                                                     <  1:464440/140‑1 (MQ=255)

                                               ccTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATcgcg                                                                                     <  1:498098/140‑1 (MQ=255)

                                               ccTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATcgcg                                                                                     <  2:601245/140‑1 (MQ=255)

                                                cTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATcgcgc                                                                                    <  1:676612/140‑1 (MQ=255)

                                                  gCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACCCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATTGCGCgg                                                                                  <  2:46665/140‑1 (MQ=255)

                                                   cGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATcgcg                                                                                     <  2:1578111/136‑1 (MQ=255)

                                                   cGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATcgcg                                                                                     >  1:1578111/1‑136 (MQ=255)

                                                    ggAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGt                                                                                <  1:891860/140‑1 (MQ=255)

                                                      aaaGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTa                                                                              <  2:1560257/140‑1 (MQ=255)

                                                          aTGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGa                                                                          >  1:1081133/1‑140 (MQ=255)

                                                          aTGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGa                                                                          <  1:591488/140‑1 (MQ=255)

                                                                  tGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAgg                                                                  >  2:1112335/1‑140 (MQ=255)

                                                                    gagaAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGt                                                                 <  1:558509/139‑1 (MQ=255)

                                                                    gagaAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGt                                                                 >  2:558509/1‑139 (MQ=255)

                                                                     agaAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTc                                                               >  1:1654086/1‑140 (MQ=255)

                                                                        aaTCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGc                                                            <  2:1501720/140‑1 (MQ=255)

                                                                          tCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGccc                                                          >  1:109531/1‑140 (MQ=255)

                                                                              gctgctGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGcccaccc                                                      >  2:1218436/1‑140 (MQ=255)

                                                                               ctgctgGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGcccaccca                                                     >  2:386075/1‑140 (MQ=255)

                                                                                      aaCTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGAt                                              <  1:699627/140‑1 (MQ=255)

                                                                                        ctctTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATaa                                            <  2:744894/140‑1 (MQ=255)

                                                                                           tttATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAAca                                         <  2:972120/140‑1 (MQ=255)

                                                                                                 gTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAgcaggc                                   <  2:1654086/140‑1 (MQ=255)

                                                                                                 gTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAgcaggc                                   <  1:483348/140‑1 (MQ=255)

                                                                                                   tCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAgcaggcag                                 >  2:785057/1‑140 (MQ=255)

                                                                                                     aGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAAcagc                                       <  2:586149/132‑1 (MQ=255)

                                                                                                     aGCAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAAcagc                                       >  1:586149/1‑132 (MQ=255)

                                                                                                       cAACGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTaa                             >  2:1212980/1‑140 (MQ=255)

                                                                                                          cGCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATgg                          >  1:173491/1‑140 (MQ=255)

                                                                                                           gCATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGt                         <  1:1112335/140‑1 (MQ=255)

                                                                                                            cATTGAACAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTc                        >  1:1082542/1‑140 (MQ=255)

                                                                                                                gAACAAGGTGTTAACGCCCTTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAggg                    <  2:327711/140‑1 (MQ=255)

                                                                                                                 aaCAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGc                   <  2:364109/140‑1 (MQ=255)

                                                                                                                 aaCAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGc                   <  2:109531/140‑1 (MQ=255)

                                                                                                                 aaCAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGc                   >  1:1351988/1‑140 (MQ=255)

                                                                                                                   cAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGCaa                 <  1:1566113/140‑1 (MQ=255)

                                                                                                                   cAAGGTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGCaa                 <  2:1082542/140‑1 (MQ=255)

                                                                                                                      ggTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGCaaaaa              >  2:1072266/1‑140 (MQ=255)

                                                                                                                      ggTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGCaa                 <  1:499627/137‑1 (MQ=255)

                                                                                                                      ggTGTTAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGCaa                 >  2:499627/1‑137 (MQ=255)

                                                                                                                           tAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGCAAAAATGTGa         >  2:1671943/1‑140 (MQ=255)

                                                                                                                           tAACGCCCGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGCAAAAATGTGa         >  1:1615471/1‑140 (MQ=255)

                                                                                                                                cccGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGCAAAAATGTGATACAg    >  2:799271/1‑140 (MQ=255)

                                                                                                                                cccGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACC‑ACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGCAAAAATGTGATACAGc   >  1:1084903/1‑140 (MQ=255)

                                                                                                                                 ccGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGCAAAAATGTGATACAGc   >  1:1468599/1‑140 (MQ=255)

                                                                                                                                  cGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGCAAAAATGTGATACAGCg  >  1:1484065/1‑140 (MQ=255)

                                                                                                                                  cGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGCAAAAATGTGATACAGCg  >  1:42520/1‑140 (MQ=255)

                                                                                                                                  cGTGGTAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCCGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACGCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGCAAAAATGTGATACAGCg  >  2:1491001/1‑140 (MQ=255)

                                                                                                                                  cGTGGTAGCGGTAAACAGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGCAAAAATGTGATACAGCg  >  2:1225583/1‑140 (MQ=255)

GTTTCACCCAACGCTCTGCCACCACTTGCTGCACTGGCATCCCACCGCCTGCGGAAAGATGCAGACTGGAGAAATCCAGCTGCTGGAACTCTTTATTGTTCAGCAACGCATTGAACAAGGTGTTAACGCCCGTGATAGCGGTAAACGGATATTTCGCTAACTCTTTTACCAACCCTGGAATATCGCGCGGGTTAGTGATAAGCAGGTTCTGCCCACCCAGTTCGATAAACAGCAGGCAGTTAATGGTCAGGGCAAAAATGTGATACAGCG  >  NC_000913/1888705‑1888974

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A