Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,055,267	(C)_6→7	coding (207/1455 nt)	amn →	AMP nucleosidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,055,261	1	.	C	93.2%	458.3 / 21.5	132	coding (201/1455 nt)	amn	AMP nucleosidase
Reads supporting (aligned to +/- strand): ref base . (9/0); new base C (56/67); total (65/67)
Fisher's exact test for biased strand distribution p-value = 1.26e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.14e-01

Only 100 of 140 total aligned reads displayed.

ATGAGCAATCTGTAGTCGCATTACGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAAT‑CCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTATCAGGATTATGGTGCGCATA  >  NC_000913/2055122‑2055394

aTGAGCAATCTGTAGTCGCATTACGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAAt                                                                                                                                        <  1:1141475/140‑1 (MQ=255)

       aTCTGTAGTCGCATTACGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAAT‑ccccccc                                                                                                                                >  1:258174/1‑139 (MQ=255)

       aTCTGTAGTCGCATTACGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAAT‑ccccccc                                                                                                                                >  1:187067/1‑139 (MQ=255)

       aTCTGTAGTCGCATTACGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAAT‑ccccccc                                                                                                                                >  2:786349/1‑139 (MQ=255)

         cTGTAGTCGCATTACGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAAT‑CCCCCCcaa                                                                                                                              >  2:521762/1‑140 (MQ=255)

         cTGTAGTCGCATTACGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAAT‑CCCCCCcaa                                                                                                                              >  2:186056/1‑140 (MQ=255)

         cTGTAGTCGCATTACGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAAT‑CCCCCCcaa                                                                                                                              >  2:500971/1‑140 (MQ=255)

         cTGTAGTCGCATTACGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAAT‑CCCCCCcaa                                                                                                                              >  1:1109142/1‑140 (MQ=255)

         cTGTAGTCGCATTACGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAAT‑CCCCCCcaa                                                                                                                              >  2:117566/1‑140 (MQ=255)

                  cATTACGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACgcgcgc                                                                                                                      >  2:711636/1‑140 (MQ=255)

                  cATTACGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACgcgcgc                                                                                                                      >  2:574521/1‑140 (MQ=255)

                   aTTACGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAAcgc                                                                                                                          <  1:1295648/135‑1 (MQ=255)

                   aTTACGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAAcgc                                                                                                                          >  2:1295648/1‑135 (MQ=255)

                   aTTACGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCa                                                                                                                     >  2:280143/1‑140 (MQ=255)

                      aCGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCGCTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCAttt                                                                                                                  >  1:987318/1‑140 (MQ=255)

                       cGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTg                                                                                                                 <  2:258174/140‑1 (MQ=255)

                        gCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTgg                                                                                                                <  2:1381459/140‑1 (MQ=255)

                           aCGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCg                                                                                                             <  1:591838/140‑1 (MQ=255)

                             gCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCt                                                                                                           >  1:250744/1‑140 (MQ=255)

                                 ttGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTAc                                                                                                       >  1:1600604/1‑140 (MQ=255)

                                 ttGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTAc                                                                                                       >  1:1336160/1‑140 (MQ=255)

                                  tGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTAcc                                                                                                      >  1:1136897/1‑140 (MQ=255)

                                   ggCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTAccc                                                                                                     >  1:581364/1‑140 (MQ=255)

                                    gCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCa                                                                                                    <  2:585610/140‑1 (MQ=255)

                                    gCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTATGTCTATCCATCACTGACCGTAACCTGGGCCGGTAGCACTACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCa                                                                                                    <  2:390520/140‑1 (MQ=255)

                                      aaCTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACg                                                                                                  <  2:902010/140‑1 (MQ=255)

                                      aaCTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACg                                                                                                  <  2:1627359/140‑1 (MQ=255)

                                      aaCTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACg                                                                                                  <  2:462482/140‑1 (MQ=255)

                                      aaCTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACg                                                                                                  <  2:904116/140‑1 (MQ=255)

                                        cTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCa                                                                                                    >  1:984017/1‑136 (MQ=255)

                                           tatTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACgcaggc                                                                                             >  2:390822/1‑140 (MQ=255)

                                                cAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTa                                                                                        >  1:1372533/1‑140 (MQ=255)

                                                cAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTa                                                                                        <  1:711636/140‑1 (MQ=255)

                                                  aGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTaca                                                                                      <  2:128477/140‑1 (MQ=255)

                                                  aGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTaca                                                                                      >  2:647330/1‑140 (MQ=255)

                                                   gTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTacac                                                                                     >  2:503998/1‑140 (MQ=255)

                                                   gTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTacac                                                                                     >  2:338197/1‑140 (MQ=255)

                                                    tGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTAcacc                                                                                    <  2:1607813/140‑1 (MQ=255)

                                                     ggCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCATTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTAcacca                                                                                   >  1:1205507/1‑140 (MQ=255)

                                                     ggCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACACCCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACgcag                                                                                               <  1:1256272/128‑1 (MQ=255)

                                                     ggCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCa                                                                                                    <  1:313463/123‑1 (MQ=255)

                                                     ggCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCa                                                                                                    >  2:313463/1‑123 (MQ=255)

                                                     ggCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACgcag                                                                                               >  2:1256272/1‑128 (MQ=255)

                                                     ggCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTAcacca                                                                                   >  1:712859/1‑140 (MQ=255)

                                                     ggCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTAcacca                                                                                   >  1:1595321/1‑140 (MQ=255)

                                                     ggCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTAcacca                                                                                   >  1:950034/1‑140 (MQ=255)

                                                     ggCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTAcacca                                                                                   >  1:1195810/1‑140 (MQ=255)

                                                       cGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTAcaccac                                                                                  >  1:381623/1‑139 (MQ=255)

                                                          aTTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACg                                                                              <  2:712859/140‑1 (MQ=255)

                                                          aTTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACg                                                                              <  1:574521/140‑1 (MQ=255)

                                                           ttACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGa                                                                             >  2:1540887/1‑140 (MQ=255)

                                                             aCCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGAtt                                                                           >  1:835954/1‑140 (MQ=255)

                                                               cTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTAc                                                                         <  2:244382/140‑1 (MQ=255)

                                                               cTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTAc                                                                         <  1:673712/140‑1 (MQ=255)

                                                                tgatgaAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACt                                                                        <  1:544054/140‑1 (MQ=255)

                                                                 gatgaAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTc                                                                       <  1:647330/140‑1 (MQ=255)

                                                                  atgaAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCg                                                                      <  2:968544/140‑1 (MQ=255)

                                                                    gaAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGcc                                                                    <  2:1600604/140‑1 (MQ=255)

                                                                    gaAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGcc                                                                    <  1:521762/140‑1 (MQ=255)

                                                                    gaAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCATAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGcc                                                                    <  2:926966/140‑1 (MQ=255)

                                                                        aCGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTAc                                                                <  1:1410100/140‑1 (MQ=255)

                                                                               cAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCttt                                                         >  2:909846/1‑140 (MQ=255)

                                                                                       gTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTa                                                 <  1:745407/140‑1 (MQ=255)

                                                                                       gTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTa                                                 <  1:294223/140‑1 (MQ=255)

                                                                                       gTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTa                                                 <  2:418113/140‑1 (MQ=255)

                                                                                                tCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGa                                        >  1:915080/1‑140 (MQ=255)

                                                                                                      cATCACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACt                                  >  1:386649/1‑140 (MQ=255)

                                                                                                         cACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTAc                               <  1:1612421/140‑1 (MQ=255)

                                                                                                         cACTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTAc                               >  2:1079461/1‑140 (MQ=255)

                                                                                                          aCTGACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACg                              <  2:1136897/140‑1 (MQ=255)

                                                                                                             gACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTg                           <  1:500971/140‑1 (MQ=255)

                                                                                                             gACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTg                           <  1:1493032/140‑1 (MQ=255)

                                                                                                             gACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTg                           <  1:470483/140‑1 (MQ=255)

                                                                                                             gACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTg                           <  1:563579/140‑1 (MQ=255)

                                                                                                             gACCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTg                           <  2:1440148/140‑1 (MQ=255)

                                                                                                              aCCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGc                          >  2:969191/1‑140 (MQ=255)

                                                                                                              aCCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGc                          >  1:1029792/1‑140 (MQ=255)

                                                                                                              aCCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGc                          >  1:1430779/1‑140 (MQ=255)

                                                                                                              aCCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGc                          >  1:1474689/1‑140 (MQ=255)

                                                                                                              aCCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGc                          >  1:616629/1‑140 (MQ=255)

                                                                                                              aCCGTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGc                          >  1:676167/1‑140 (MQ=255)

                                                                                                                 gTAACCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGt                       <  2:386649/140‑1 (MQ=255)

                                                                                                                   aaCCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTAt                     <  2:290421/140‑1 (MQ=255)

                                                                                                                   aaCCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTAt                     <  2:1372533/140‑1 (MQ=255)

                                                                                                                   aaCCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTAt                     <  2:915080/140‑1 (MQ=255)

                                                                                                                   aaCCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTAt                     <  2:1336160/140‑1 (MQ=255)

                                                                                                                   aaCCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTAt                     <  1:186056/140‑1 (MQ=255)

                                                                                                                   aaCCTGGGACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTAt                     <  1:390822/140‑1 (MQ=255)

                                                                                                                          gACGGTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTATCAGGAtt              >  1:1050146/1‑140 (MQ=255)

                                                                                                                             ggTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTAt                     >  1:207449/1‑130 (MQ=255)

                                                                                                                             ggTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTAt                     <  2:207449/130‑1 (MQ=255)

                                                                                                                             ggTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTATCAGGATTATg           >  2:1338983/1‑140 (MQ=255)

                                                                                                                              gTAGCACAACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTATCAGGATTATgg          >  2:1461361/1‑140 (MQ=255)

                                                                                                                              gTAGCACAACCAAT‑CCCCCCAAAACGCGCGCATTTTGTCGCTTTACCCCCGCAGGCAGCTACACCACCACGGTTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTATCAGGATTATGGt         >  2:626607/1‑140 (MQ=255)

                                                                                                                                    caACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTATCa                   >  1:804322/1‑125 (MQ=255)

                                                                                                                                    caACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTATCa                   <  2:804322/125‑1 (MQ=255)

                                                                                                                                    caACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTATCAGGATTATGGTGCGCa    <  2:835954/140‑1 (MQ=255)

                                                                                                                                    caACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTATCAGGATTATGGTGCGCa    <  1:909846/140‑1 (MQ=255)

                                                                                                                                    caACCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTATCAGGATTATGGTGCGCa    <  2:1693025/140‑1 (MQ=255)

                                                                                                                                      aCCAATCCCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTATCAGGATTATGGTGCGCata  <  2:676167/140‑1 (MQ=255)

ATGAGCAATCTGTAGTCGCATTACGCAACGCCATTGGCAACTATATTACAAGTGGCGAATTACCTGATGAAAACGCCCGCAAACAAGGTCTTTTTGTCTATCCATCACTGACCGTAACCTGGGACGGTAGCACAACCAAT‑CCCCCCAAAACGCGCGCATTTGGTCGCTTTACCCACGCAGGCAGCTACACCACCACGATTACTCGCCCTACTCTCTTTCGTTCGTATCTTAATGAACAACTTACGTTGCTGTATCAGGATTATGGTGCGCATA  >  NC_000913/2055122‑2055394

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A