Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,208,573	(C)_6→7	coding (607/1137 nt)	yehP →	VWA domain‑containing protein YehP

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,208,567	1	.	C	100.0%	199.3 / NA	54	S201P (TCC→CCC)	yehP	VWA domain‑containing protein YehP
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (29/25); total (29/25)

TTCGTCAGGCTTTTTCTGGTGTCCGCGATCGCCGTCGCCGTTCATTTATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAAT‑CCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCGGTGATCCACTCTGCGGTGATGGCGGCCTGTTTG  >  NC_000913/2208430‑2208689

ttCGTCAGGCTTTTTCTGGTGTCCGCGATCGCCGTCGCCGTTCATTTATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAAT‑cc                                                                                                                          >  2:1472609/1‑140 (MQ=255)

  cGTCAGGCTTTTTCTGGTGTCCGCGATCGCCGTCGCCGTTCATTTATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAAT‑cccc                                                                                                                        <  1:1488738/140‑1 (MQ=255)

   gTCAGGCTTTTTCTGGTGTCCGCGATCGCCGTCGCCGTTCATTTATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAAT‑ccccc                                                                                                                       <  1:1424442/140‑1 (MQ=255)

     cAGGCTTTTTCTGGTGTCCGCGATCGCCGTCGCCGTTCATTTATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAAT‑ccccccc                                                                                                                     >  2:1334418/1‑139 (MQ=255)

            tttCTGGTGTCCGCGATCGCCGTCGCCGTTCATTTATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTaa                                                                                                               >  2:326318/1‑140 (MQ=255)

            tttCTGGTGTCCGCGATCGCCGTCGCCGTTCATTTATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTaa                                                                                                               <  2:400943/140‑1 (MQ=255)

                  gtgtCTGCGATCGCCGTCGCCGTTCATTTATTCCACTGGCGCGAAGCTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCg                                                                                                         >  2:1176668/1‑140 (MQ=255)

                       cgcgATCGCCGTCGCCGTTCATTTATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTa                                                                                                    >  2:487576/1‑140 (MQ=255)

                        gcgATCGCCGTCGCCGTTCATTTATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTaa                                                                                                   <  1:1334418/140‑1 (MQ=255)

                               ccgtcgccgtTCATTTATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCaa                                                                                            >  2:718200/1‑140 (MQ=255)

                               ccgtcgccgtTCATTTATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCaa                                                                                            >  2:648991/1‑140 (MQ=255)

                                    gccgtTCATTTATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGa                                                                                       <  1:1685993/140‑1 (MQ=255)

                                      cgtTCATTTATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAAc                                                                                     >  1:1386725/1‑140 (MQ=255)

                                         tCATTTATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAAt                                                                                  <  2:1446982/140‑1 (MQ=255)

                                             ttATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCa                                                                              <  2:1301233/140‑1 (MQ=255)

                                             ttATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCa                                                                              <  1:1176668/140‑1 (MQ=255)

                                             ttATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCa                                                                              <  1:648991/140‑1 (MQ=255)

                                              tATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCaa                                                                             <  2:278111/140‑1 (MQ=255)

                                                ttCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACt                                                                           >  1:1702665/1‑140 (MQ=255)

                                                ttCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTACAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACt                                                                           <  1:1646884/140‑1 (MQ=255)

                                                 tCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTg                                                                          <  2:579222/140‑1 (MQ=255)

                                                  ccACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTgg                                                                         >  2:1591592/1‑140 (MQ=255)

                                                    aCTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTc                                                                       >  1:656403/1‑140 (MQ=255)

                                                     cTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCt                                                                      >  2:1604476/1‑140 (MQ=255)

                                                     cTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCt                                                                      >  2:1063798/1‑140 (MQ=255)

                                                     cTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCt                                                                      >  1:1536503/1‑140 (MQ=255)

                                                      tGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCtt                                                                     <  1:718200/140‑1 (MQ=255)

                                                       ggCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTa                                                                    <  2:1702665/140‑1 (MQ=255)

                                                       ggCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTa                                                                    >  2:1291361/1‑140 (MQ=255)

                                                          gcgAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTg                                                                 <  1:487576/140‑1 (MQ=255)

                                                           cgAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTgg                                                                <  2:1386725/140‑1 (MQ=255)

                                                                          aaaaGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGAt                                                 >  2:1552488/1‑140 (MQ=255)

                                                                                    tGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGt                                          >  1:675367/1‑137 (MQ=255)

                                                                                    tGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGt                                          <  2:675367/137‑1 (MQ=255)

                                                                                    tGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGa                                       >  2:434628/1‑140 (MQ=255)

                                                                                      cgcgcCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGAtt                                     >  2:847624/1‑140 (MQ=255)

                                                                                      cgcgcCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGAtt                                     >  1:1105907/1‑140 (MQ=255)

                                                                                      cgcgcCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGAtt                                     >  1:1212099/1‑140 (MQ=255)

                                                                                      cgcgcCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGAtt                                     <  1:1472609/140‑1 (MQ=255)

                                                                                        cgcCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCg                                   <  2:1536503/140‑1 (MQ=255)

                                                                                         gcCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCgg                                  >  1:1044438/1‑140 (MQ=255)

                                                                                         gcCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCgg                                  >  2:323401/1‑140 (MQ=255)

                                                                                             aCCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCGGTGAt                              <  1:93099/140‑1 (MQ=255)

                                                                                                tGCAACACTGGCACCCGCAACACGGCAGGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCGGTGATCCa                           <  1:1063798/140‑1 (MQ=255)

                                                                                                   aaCACTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCGGTGATCCActc                        >  1:1146707/1‑140 (MQ=255)

                                                                                                     cacTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGAtt                                     >  1:786109/1‑125 (MQ=255)

                                                                                                     cacTGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGAtt                                     <  2:786109/125‑1 (MQ=255)

                                                                                                        tGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCGGTGATCCACTCTGCgg                   <  2:454639/140‑1 (MQ=255)

                                                                                                        tGGCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCGGTGATCCACTCTGCgg                   >  1:858377/1‑140 (MQ=255)

                                                                                                         ggCACCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCGGTGATCCACTCTGCGGt                  >  1:469585/1‑140 (MQ=255)

                                                                                                            aCCCGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCGGTGATCCACTCTGCGGTGAt               >  1:285972/1‑140 (MQ=255)

                                                                                                             cccGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCGGTGATCCACTCTGCGGTGATg              >  2:453183/1‑140 (MQ=255)

                                                                                                              ccGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCGGTGATCCACTCTGCGGTGATgg             <  1:842269/140‑1 (MQ=255)

                                                                                                               cGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCGGTGATCCa                           <  1:1565628/125‑1 (MQ=255)

                                                                                                               cGCAACACGGCAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCGGTGATCCa                           >  2:1565628/1‑125 (MQ=255)

                                                                                                                         cAAGTTGTATATCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCGGTGATCCACTCTGCGGTGATGGCGGCCTGTTtg  <  1:326318/140‑1 (MQ=255)

                                                                                                                                  tatCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCGGTGATCCACTCTGCGGTGATggcggc         >  1:485975/1‑124 (MQ=255)

                                                                                                                                  tatCGAATCCCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCGGTGATCCACTCTGCGGTGATggcggc         <  2:485975/124‑1 (MQ=255)

TTCGTCAGGCTTTTTCTGGTGTCCGCGATCGCCGTCGCCGTTCATTTATTCCACTGGCGCGAAACTTTGATTTCAAAAGTACTCTGCGCGCCAACCTGCAACACTGGCACCCGCAACACGGCAAGTTGTATATCGAAT‑CCCCCCGCTTTAACAGCCGCATTAAACGCCAAAGCGAACAATGGCAACTGGTCTTACTGGTTGATCAAAGCGGATCGATGGTCGATTCGGTGATCCACTCTGCGGTGATGGCGGCCTGTTTG  >  NC_000913/2208430‑2208689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A