Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,288,561	(C)_7→8	pseudogene (354/2525 nt)	yejO ←	adhesin‑like autotransporter YejO

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,288,554	1	.	C	100.0%	456.7 / NA	123	pseudogene (361/2525 nt)	yejO	adhesin‑like autotransporter YejO
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (60/63); total (60/63)

Only 100 of 143 total aligned reads displayed.

ACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCG  >  NC_000913/2288415‑2288688

aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACgg                                                                                                                                            >  1:1158331/1‑140 (MQ=255)

aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACgg                                                                                                                                            >  2:1328081/1‑140 (MQ=255)

aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACgg                                                                                                                                            >  1:642672/1‑140 (MQ=255)

aCCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACgg                                                                                                                                            <  2:228453/140‑1 (MQ=255)

 ccGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑‑‑c                                                                                                                                        <  1:491843/140‑1 (MQ=255)

    agaCGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑‑‑cccc                                                                                                                                     >  1:572611/1‑140 (MQ=255)

     gaCGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑‑‑ccccc                                                                                                                                    >  2:84725/1‑140 (MQ=255)

        ggTTTGTTCCGAATACCTCCACGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAACTGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑‑‑cccccccc                                                                                                                                 <  2:1555827/140‑2 (MQ=255)

         gTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑‑‑cccccccca                                                                                                                                <  2:1240428/140‑3 (MQ=255)

          tttGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑‑‑ccccccccat                                                                                                                               >  1:245733/1‑137 (MQ=255)

            tGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑‑‑ccccccccatct                                                                                                                             <  2:1009893/140‑6 (MQ=255)

               tCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCtttt                                                                                                                           >  1:247769/1‑140 (MQ=255)

                ccGATTCCCTCCATGGCCCGCGTGGTGGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCttttt                                                                                                                          <  2:1643889/140‑1 (MQ=255)

                   aaTACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCaa                                                                                                                       >  2:1675742/1‑140 (MQ=255)

                        cTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGAtt                                                                                                                  >  1:418793/1‑140 (MQ=255)

                        cTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGAtt                                                                                                                  >  1:1588929/1‑140 (MQ=255)

                           cATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑acg                                                                                                              >  1:568972/1‑138 (MQ=255)

                              ggCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAgcgc                                                                                                           <  1:1051523/140‑1 (MQ=255)

                              ggCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAgcgc                                                                                                           <  1:503812/140‑1 (MQ=255)

                               gCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGcgcc                                                                                                          <  2:292656/140‑1 (MQ=255)

                               gCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGcgcc                                                                                                          <  1:932677/140‑1 (MQ=255)

                               gCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGcgcc                                                                                                          <  1:1129530/140‑1 (MQ=255)

                                cccGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAAc                                                                                                                      <  2:48438/128‑1 (MQ=255)

                                cccGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAAc                                                                                                                      >  1:48438/1‑128 (MQ=255)

                                cccGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCACCTTTTTCCACGATT‑AAGcgccc                                                                                                         >  1:848668/1‑140 (MQ=255)

                                  cgcgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGcgcccgc                                                                                                       >  1:904356/1‑140 (MQ=255)

                                    cgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACTGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCt                                                                                                     >  1:1305965/1‑140 (MQ=255)

                                    cgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCt                                                                                                     >  1:379725/1‑140 (MQ=255)

                                    cgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCt                                                                                                     >  1:372955/1‑140 (MQ=255)

                                    cgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCt                                                                                                     >  1:499138/1‑140 (MQ=255)

                                    cgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCt                                                                                                     >  1:553663/1‑140 (MQ=255)

                                    cgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAAT‑CCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCtt                                                                                                    >  2:1159912/1‑140 (MQ=255)

                                     gTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCtt                                                                                                    <  2:1347985/140‑1 (MQ=255)

                                     gTGGTTGTTTT‑ATAGCACCGCCCGGTTTTTGGTCTACCGCAAATGCAAAATCCCCCCCTTTTACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCCTTTTTTTCAACCATTAAAGCCCCCCCCtt                                                                                                    >  2:1554963/1‑140 (MQ=255)

                                        gttgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAAT‑CCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAAt                                                                                                <  1:1159912/140‑1 (MQ=255)

                                         ttgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAAt                                                                                                <  2:1624177/140‑1 (MQ=255)

                                         ttgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAAt                                                                                                <  2:1588929/140‑1 (MQ=255)

                                         ttgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAAt                                                                                                <  1:753548/140‑1 (MQ=255)

                                          tgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCACTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATc                                                                                               >  1:309885/1‑140 (MQ=255)

                                           gttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCg                                                                                              <  2:76470/140‑1 (MQ=255)

                                           gttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCg                                                                                              <  2:642672/140‑1 (MQ=255)

                                             tttAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTg                                                                                            <  2:245733/140‑1 (MQ=255)

                                             tttAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTg                                                                                            <  1:1328081/140‑1 (MQ=255)

                                              ttAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTgg                                                                                           >  1:800016/1‑140 (MQ=255)

                                               tAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGt                                                                                          <  1:1554963/140‑1 (MQ=255)

                                                   aGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCa                                                                                      >  2:1570606/1‑140 (MQ=255)

                                                        cGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGc                                                                                 >  1:718335/1‑140 (MQ=255)

                                                          ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               <  2:1175329/140‑1 (MQ=255)

                                                          ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               >  1:603777/1‑140 (MQ=255)

                                                                 tCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCa                                                                          <  2:75489/140‑1 (MQ=255)

                                                                 tCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATa                                                                        >  1:1061893/1‑140 (MQ=255)

                                                                  cTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa                                                                       <  2:618279/140‑1 (MQ=255)

                                                                  cTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa                                                                       <  1:84725/140‑1 (MQ=255)

                                                                    gATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAAc                                                                     <  1:1675742/140‑1 (MQ=255)

                                                                     aTCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAAcc                                                                    >  1:306408/1‑140 (MQ=255)

                                                                        tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCa                                                                          >  2:407486/1‑131 (MQ=255)

                                                                        tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCa                                                                          <  1:407486/131‑1 (MQ=255)

                                                                          ccGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAg                                                               >  2:1154672/1‑140 (MQ=255)

                                                                          ccGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAg                                                               >  2:1301834/1‑140 (MQ=255)

                                                                          ccGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTAAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAg                                                               >  2:945210/1‑140 (MQ=255)

                                                                           cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGc                                                              >  2:1140670/1‑140 (MQ=255)

                                                                           cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGc                                                              >  1:345593/1‑140 (MQ=255)

                                                                             caaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgc                                                                              >  2:403012/1‑122 (MQ=255)

                                                                              aaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGcaca                                                           <  1:1566335/140‑1 (MQ=255)

                                                                               aatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCacac                                                          <  1:948391/140‑1 (MQ=255)

                                                                               aatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCacac                                                          >  1:817827/1‑140 (MQ=255)

                                                                                      atCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCattatt                                                   <  1:1442154/140‑1 (MQ=255)

                                                                                           cccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCg                                              <  2:974857/140‑1 (MQ=255)

                                                                                            ccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGc                                               <  1:571037/138‑1 (MQ=255)

                                                                                            ccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGc                                               >  2:571037/1‑138 (MQ=255)

                                                                                            ccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGt                                             >  1:1682184/1‑140 (MQ=255)

                                                                                                  tAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTg                                       >  2:1646419/1‑140 (MQ=255)

                                                                                                       tCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTg                                  >  1:458500/1‑140 (MQ=255)

                                                                                                       tCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTg                                  >  2:529188/1‑140 (MQ=255)

                                                                                                       cccAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTg                                  <  2:418793/139‑1 (MQ=255)

                                                                                                         cAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGcc                                >  2:596111/1‑140 (MQ=255)

                                                                                                          agtagtCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg                               >  2:195732/1‑140 (MQ=255)

                                                                                                              gtCCTCCCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGcc                           >  2:143927/1‑140 (MQ=255)

                                                                                                                cctccCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCAc                         >  2:180732/1‑140 (MQ=255)

                                                                                                                 ctccCTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCAcc                        >  1:547090/1‑140 (MQ=255)

                                                                                                                   cccTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCa                      >  1:796962/1‑140 (MQ=255)

                                                                                                                   cccTTTTCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCa                      <  1:1578676/140‑1 (MQ=255)

                                                                                                                        ttCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGa                 <  2:469574/140‑1 (MQ=255)

                                                                                                                         tCGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGaa                <  2:572611/140‑1 (MQ=255)

                                                                                                                          cGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAAc               <  2:458500/140‑1 (MQ=255)

                                                                                                                          cGATAGCGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAAc               <  2:600859/140‑1 (MQ=255)

                                                                                                                                cGACAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTg         >  2:456137/1‑140 (MQ=255)

                                                                                                                                  aCAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGAt       <  2:557291/140‑1 (MQ=255)

                                                                                                                                  aCAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGAt       <  2:345504/140‑1 (MQ=255)

                                                                                                                                  aCAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGAt       >  2:1436155/1‑140 (MQ=255)

                                                                                                                                  aCAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGAt       >  2:804153/1‑140 (MQ=255)

                                                                                                                                  aCAAAGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGAt       >  1:471973/1‑140 (MQ=255)

                                                                                                                                     aaGACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAAc    <  1:180732/140‑1 (MQ=255)

                                                                                                                                       gACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  2:1305965/140‑1 (MQ=255)

                                                                                                                                       gACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  2:547090/140‑1 (MQ=255)

                                                                                                                                       gACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  2:682689/140‑1 (MQ=255)

                                                                                                                                       gACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:456137/140‑1 (MQ=255)

                                                                                                                                       gACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:1436155/140‑1 (MQ=255)

                                                                                                                                       gACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:1423042/140‑1 (MQ=255)

                                                                                                                                       gACGGC‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  2:1098487/140‑1 (MQ=255)

ACCGAGACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑‑‑CCCCCCCATCTTTTTCAACGATT‑AAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCG  >  NC_000913/2288415‑2288688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A