Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,528,455 G→A S574S (AGC→AGT)  ligA ← DNA ligase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,528,4550GA100.0% 291.6 / NA 81S574S (AGC→AGT) ligADNA ligase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (47/34);  total (47/34)

AGCTTTAGCGTCATCACGCGACATCTGGCTTAAGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCGCTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGGCTTCCAGCGCTTCCAGCGTGCCGAAATATGCC  >  NC_000913/2528320‑2528590
                                                                                                                                       |                                                                                                                                       
aGCTTTAGCGTCATCACGCGACATCTGGCTTAAGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACtga                                                                                                                                     <  1:1533148/140‑1 (MQ=255)
       gCGTCATCACGCGACATCTGGCTTAAGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACAtt                                                                                                                              >  2:840171/1‑140 (MQ=255)
        cGTCATCACGCGACATCTGGCTTAAGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTg                                                                                                                             <  1:951272/140‑1 (MQ=255)
        cGTCATCACGCGACATCTGGCTTAAGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTg                                                                                                                             <  2:1676587/140‑1 (MQ=255)
            atcaCGCGACATCTGGCTTAAGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGt                                                                                                                         >  2:1128521/1‑140 (MQ=255)
                cgcgACATCTGGCTTAAGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCt                                                                                                                     <  1:1433221/140‑1 (MQ=255)
                      aTCTGGCTTAAGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTttcttc                                                                                                               <  2:399231/140‑1 (MQ=255)
                       tCTGGCTTAAGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCg                                                                                                              >  1:154715/1‑140 (MQ=255)
                        cTGGCTTAAGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACAATGCGGTTGCTTTCTTCgg                                                                                                             >  2:185242/1‑140 (MQ=255)
                           gCTTAAGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCaa                                                                                                          >  1:923369/1‑140 (MQ=255)
                             ttAAGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAaag                                                                                                        <  2:923369/140‑1 (MQ=255)
                             ttAAGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAaag                                                                                                        <  1:836049/140‑1 (MQ=255)
                              tAAGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAaaga                                                                                                       <  2:1475430/140‑1 (MQ=255)
                              tAAGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAaaga                                                                                                       <  2:203263/140‑1 (MQ=255)
                                aGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAaagaag                                                                                                     >  1:226689/1‑140 (MQ=255)
                                aGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAaagaag                                                                                                     >  2:437897/1‑140 (MQ=255)
                                aGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAaagaag                                                                                                     >  1:1131207/1‑140 (MQ=255)
                                     cccGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCTGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCgg                                                                                                             <  1:88675/127‑1 (MQ=255)
                                     cccGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCTGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCgg                                                                                                             >  2:88675/1‑127 (MQ=255)
                                     cccGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTtgtg                                                                                                >  2:1178491/1‑140 (MQ=255)
                                     cccGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTtgtg                                                                                                >  1:1115741/1‑140 (MQ=255)
                                     cccGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTACGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAaag                                                                                                        >  1:1415380/1‑132 (MQ=255)
                                     cccGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTACGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAaag                                                                                                        <  2:1415380/132‑1 (MQ=255)
                                         tAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACg                                                                                            <  2:154715/140‑1 (MQ=255)
                                          aaGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGt                                                                                           >  1:893551/1‑140 (MQ=255)
                                           aGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTg                                                                                          >  1:1031791/1‑140 (MQ=255)
                                            gCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTgg                                                                                         <  2:893551/140‑1 (MQ=255)
                                             caccacGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTggg                                                                                        <  1:840171/140‑1 (MQ=255)
                                                cacGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATg                                                                                     >  1:100459/1‑140 (MQ=255)
                                                  cGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCa                                                                                   >  2:485844/1‑140 (MQ=255)
                                                     ttttACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACg                                                                                >  2:381038/1‑140 (MQ=255)
                                                       ttACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGAc                                                                              <  1:1042371/140‑1 (MQ=255)
                                                             gCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGc                                                                         >  1:1017402/1‑139 (MQ=255)
                                                             gCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGc                                                                         <  2:1017402/139‑1 (MQ=255)
                                                             gCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTT‑CGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACa                                                                             <  2:1699436/134‑1 (MQ=255)
                                                             gCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTT‑CGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACa                                                                             >  1:1699436/1‑134 (MQ=255)
                                                               aaaCGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCaa                                                                      >  2:1304202/1‑140 (MQ=255)
                                                               aaaCGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCaa                                                                      >  1:1048328/1‑140 (MQ=255)
                                                               aaaCGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCaa                                                                      >  1:1494177/1‑140 (MQ=255)
                                                               aaaCGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCaa                                                                      <  2:989938/140‑1 (MQ=255)
                                                                  cGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACAt                                                                   <  1:1178491/140‑1 (MQ=255)
                                                                       tGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGc                                                              <  2:999416/140‑1 (MQ=255)
                                                                       tGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGc                                                              <  1:1038386/140‑1 (MQ=255)
                                                                        gTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCa                                                             <  2:1131207/140‑1 (MQ=255)
                                                                        gTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCa                                                             >  1:1125919/1‑140 (MQ=255)
                                                                             tctcTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCttt                                                        >  2:362186/1‑140 (MQ=255)
                                                                                   ccGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGc                                                  >  2:538372/1‑140 (MQ=255)
                                                                                   ccGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGc                                                  >  2:762239/1‑140 (MQ=255)
                                                                                     gcgTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGctc                                                >  1:430095/1‑140 (MQ=255)
                                                                                      cgTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAg                                                                >  1:793524/1‑123 (MQ=255)
                                                                                      cgTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAg                                                                <  2:793524/123‑1 (MQ=255)
                                                                                      cgTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGctct                                               >  2:841801/1‑140 (MQ=255)
                                                                                      cgTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGctct                                               >  2:387619/1‑140 (MQ=255)
                                                                                           aTAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAAt                                          >  2:1571197/1‑140 (MQ=255)
                                                                                              aCGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGa                                       >  2:1339778/1‑140 (MQ=255)
                                                                                                gATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAg                                     >  2:630433/1‑140 (MQ=255)
                                                                                                 aTCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGc                                    <  1:437897/140‑1 (MQ=255)
                                                                                                 aTCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGc                                    <  2:445872/140‑1 (MQ=255)
                                                                                                   cGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCgg                                  >  1:1213435/1‑140 (MQ=255)
                                                                                                     gcgcAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGc                                    >  1:93025/1‑136 (MQ=255)
                                                                                                     gcgcAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGc                                    <  2:93025/136‑1 (MQ=255)
                                                                                                     gcgcAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGgct                                <  2:1494315/140‑1 (MQ=255)
                                                                                                     gcgcAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGgct                                >  1:781019/1‑140 (MQ=255)
                                                                                                     gcgcAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCCTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGgct                                >  1:904048/1‑140 (MQ=255)
                                                                                                      cgcAGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGgctt                               <  1:1128521/140‑1 (MQ=255)
                                                                                                         aGGCCAGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGgcttcca                            >  1:590206/1‑140 (MQ=255)
                                                                                                              aGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGgcttccagcgct                       >  1:1225422/1‑140 (MQ=255)
                                                                                                              aGTGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGgcttccagcgct                       >  2:1677923/1‑140 (MQ=255)
                                                                                                                tGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGgcttccagcgcttc                     >  1:1413284/1‑140 (MQ=255)
                                                                                                                tGAACACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGgcttccagcgcttc                     >  2:1340347/1‑140 (MQ=255)
                                                                                                                  aaCACCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGgcttccagcgcttcca                   <  1:387619/140‑1 (MQ=255)
                                                                                                                    cacCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGgcttccagcgcttccagc                 <  2:1031791/140‑1 (MQ=255)
                                                                                                                     acCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGGcttccagcgcttccagcg                >  1:1062475/1‑140 (MQ=255)
                                                                                                                     acCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGAC‑ATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGgcttccag                           >  2:318905/1‑128 (MQ=255)
                                                                                                                     acCTTCCGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGAC‑ATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGgcttccag                           <  1:318905/128‑1 (MQ=255)
                                                                                                                          ccGCCAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGGCTTCCAGCGCTTCCAGCGTGCCg           >  2:1660451/1‑140 (MQ=255)
                                                                                                                             ccAACAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGGCTTCCAGCGCTTCCAGCGTGCCGaaa        >  1:145379/1‑140 (MQ=255)
                                                                                                                               aaCAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGGCTTCCATCGCTTCCAGCGTGCCGAAata      <  2:1213435/140‑1 (MQ=255)
                                                                                                                                 cAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGGCTTCCAGCGCTTCCAGCGTGCCGAAATATg    >  1:1698056/1‑140 (MQ=255)
                                                                                                                                 cAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGGCTTCCAGCGCTTCCAGCGTGCCGAAATATg    <  2:1698056/140‑1 (MQ=255)
                                                                                                                                 cAGCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGGCTTCCAGCGCTTCCAGCGTGCCGAAATATg    >  2:918337/1‑140 (MQ=255)
                                                                                                                                   gCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGGCTTCCAGCGCTTCCAGCGTGCCGAAATATgcc  <  1:1629329/140‑1 (MQ=255)
                                                                                                                                   gCTCACTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGGCTTCCAGCGCTTCCAGCGTGCCGAAATATgcc  <  2:1413284/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                       
AGCTTTAGCGTCATCACGCGACATCTGGCTTAAGCTGCCCGTAAGCACCACGGTTTTACCAGCAAACGGGCTGTCAATCTCTTCCGCGTTGATAACGATCGGCGCAGGCCAGTGAACACCTTCCGCCAACAGCTCGCTGATGACATTGCGGTTGCTTTCTTCGGCAAAGAAGTTGTGAACGTGGGATGCAACGACAATGCCAACATCAGGCACCTTTTGCAGCTCTTCAATCGAAGCGGCTTCCAGCGCTTCCAGCGTGCCGAAATATGCC  >  NC_000913/2528320‑2528590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A