Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,620,297 G→A Y192Y (TAC→TAT)  upp ← uracil phosphoribosyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,620,2970GA100.0% 251.7 / NA 70Y192Y (TAC→TAT) uppuracil phosphoribosyltransferase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (38/32);  total (38/32)

TTATCCTCTGTATTATGTGTTATAGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAGCTACCAGCACCAGAACTTTGATGCTGCTGCAGCCCGCT  >  NC_000913/2620165‑2620429
                                                                                                                                    |                                                                                                                                    
ttatCCTCTGTATTATGTGTTATAGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGt                                                                                                                               >  2:1021584/1‑140 (MQ=255)
   tCCTCTGTATTATGTGTTATAGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCt                                                                                                                            <  2:133134/140‑1 (MQ=255)
   tCCTCTGTATTATGTGTTATAGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCt                                                                                                                            >  1:375164/1‑140 (MQ=255)
     ctctGTATTATGTGTTATAGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCg                                                                                                                          >  2:514813/1‑140 (MQ=255)
       ctGTATTATGTGTTATAGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGtt                                                                                                                        <  1:854546/140‑1 (MQ=255)
       ctGTATTATGTGTTATAGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGtt                                                                                                                        <  2:375164/140‑1 (MQ=255)
        tGTATTATGTGTTATAGGCGCTTTACTTAAAAATTAGCCGTCTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCCCCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTc                                                                                                                       <  1:830735/140‑1 (MQ=255)
        tGTATTATGTGTTATAGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTc                                                                                                                       >  1:1262387/1‑140 (MQ=255)
        tGTATTATGTGTTATAGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTc                                                                                                                       >  1:1455760/1‑140 (MQ=255)
        tGTATTATGTGTTATAGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTc                                                                                                                       >  2:904916/1‑140 (MQ=255)
        tGTATTATGTGTTATAGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTc                                                                                                                       >  2:1093441/1‑140 (MQ=255)
               tgtgTTATAGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCt                                                                                                                >  1:637081/1‑140 (MQ=255)
                 tgtTATAGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGa                                                                                                              >  1:575352/1‑140 (MQ=255)
                  gtTATAGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGACATCGCCGAGGCCCGGAATAATATATCCGTGCTCGtt                                                                                                                        <  1:670428/129‑1 (MQ=255)
                  gtTATAGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGACATCGCCGAGGCCCGGAATAATATATCCGTGCTCGtt                                                                                                                        >  2:670428/1‑129 (MQ=255)
                    tataGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTc                                                                                                                       <  2:1193236/128‑1 (MQ=255)
                    tataGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTc                                                                                                                       >  1:1193236/1‑128 (MQ=255)
                    tataGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCa                                                                                                           >  1:916674/1‑140 (MQ=255)
                    tataGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCa                                                                                                           >  1:873149/1‑140 (MQ=255)
                    tataGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCa                                                                                                           >  2:827689/1‑140 (MQ=255)
                    tataGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCa                                                                                                           >  1:1300824/1‑140 (MQ=255)
                      taGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTc                                                                                                                       >  1:168235/1‑126 (MQ=255)
                      taGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTc                                                                                                                       <  2:168235/126‑1 (MQ=255)
                      taGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAAt                                                                                                         <  2:1455760/140‑1 (MQ=255)
                      taGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAAt                                                                                                         >  2:836868/1‑140 (MQ=255)
                      taGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAAt                                                                                                         <  2:916674/140‑1 (MQ=255)
                        ggCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCg                                                                                                       <  2:873149/140‑1 (MQ=255)
                        ggCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCg                                                                                                       <  1:827689/140‑1 (MQ=255)
                        ggCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCg                                                                                                       <  2:575352/140‑1 (MQ=255)
                        ggCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCg                                                                                                       <  1:836868/140‑1 (MQ=255)
                        ggCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCg                                                                                                       <  1:381844/140‑1 (MQ=255)
                        ggCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCg                                                                                                       <  1:514813/140‑1 (MQ=255)
                         gcgcTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGa                                                                                                      >  2:656308/1‑140 (MQ=255)
                         gcgcTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGa                                                                                                      <  1:904916/140‑1 (MQ=255)
                         gcgcTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGa                                                                                                      <  1:223032/140‑1 (MQ=255)
                           gcTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATg                                                                                                    <  1:656308/140‑1 (MQ=255)
                           gcTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATg                                                                                                    >  1:448891/1‑140 (MQ=255)
                           gcTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATg                                                                                                    <  1:1021584/140‑1 (MQ=255)
                             tttACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCg                                                                                                  >  2:701895/1‑140 (MQ=255)
                               tACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCTGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCATTCCCTGATCAATCGATGCggg                                                                                                >  2:1367283/1‑139 (MQ=255)
                                         aaaGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCg                                                                                      >  2:188373/1‑140 (MQ=255)
                                                     tAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTgc                                                                          <  2:637081/140‑1 (MQ=255)
                                                            ggCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCttttt                                                                   >  2:996664/1‑140 (MQ=255)
                                                                        ttttATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGa                                                       >  2:1354926/1‑140 (MQ=255)
                                                                         tttATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGAt                                                      <  2:1262387/140‑1 (MQ=255)
                                                                         tttATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGAt                                                      <  2:901460/140‑1 (MQ=255)
                                                                              tCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCtt                                                 <  2:448891/140‑1 (MQ=255)
                                                                                 ttATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTg                                              >  1:1284066/1‑140 (MQ=255)
                                                                                  tATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTgg                                             >  2:33338/1‑140 (MQ=255)
                                                                                  tATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTgg                                             >  1:83425/1‑140 (MQ=255)
                                                                                   aTTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGgc                                            <  1:259542/140‑1 (MQ=255)
                                                                                     ttCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCATGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGgcgc                                          <  1:1016552/140‑1 (MQ=255)
                                                                                       cGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAg                                        >  2:579884/1‑140 (MQ=255)
                                                                                       cGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAg                                        >  2:717295/1‑140 (MQ=255)
                                                                                       cGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAg                                        <  1:996664/140‑1 (MQ=255)
                                                                                          aCCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAGCTa                                     >  1:306974/1‑140 (MQ=255)
                                                                                              aaGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAGCTACCAg                                 >  1:987024/1‑140 (MQ=255)
                                                                                                   tttGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAGCTACCAGCACCa                            >  2:392698/1‑140 (MQ=255)
                                                                                                   tttGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAGCTACCAGCACCa                            >  1:997739/1‑140 (MQ=255)
                                                                                                    ttGTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAGCTACCAGCACCAg                           <  1:188373/140‑1 (MQ=255)
                                                                                                      gTCACCGGCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAGCTACCAGCACCAGaa                         <  1:33338/140‑1 (MQ=255)
                                                                                                            ggCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAGCTACCAGCACCAGAACTTTGa                   <  2:306974/140‑1 (MQ=255)
                                                                                                            ggCATCGCCGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAGCTACCAGCACCAGAACTTTGa                   <  2:1284066/140‑1 (MQ=255)
                                                                                                                   ccGAGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAGCTACCAGCACCAGAACTTTGAtgctgct            <  1:579884/140‑1 (MQ=255)
                                                                                                                      aGGCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAGCTACCAGCACCAGAACTTTGATGCTGCTGCa         >  2:130361/1‑140 (MQ=255)
                                                                                                                        gCCCGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAGCTACCAGCACCAGAACTTTGATGCTGCTGCAGc       >  1:647975/1‑140 (MQ=255)
                                                                                                                           cGGAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAGCTACCAGCACCAGAACTTTGATGCTGCTGCAGCCCg    >  1:260124/1‑140 (MQ=255)
                                                                                                                            ggAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAGCTACCAGCACCAGAACTTTGATGCTGCTGCAGCCCGc   >  2:709108/1‑140 (MQ=255)
                                                                                                                             gAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAGCTACCAGCACCAGAACTTTGATGCTGCTGCAGCCCGCt  >  2:574930/1‑140 (MQ=255)
                                                                                                                             gAATAATATATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAGCTACCAGCACCAGAACTTTGATGCTGCTGCAGCCCGCt  <  1:701895/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                    
TTATCCTCTGTATTATGTGTTATAGGCGCTTTACTCAAAAAAAAGCCGACTCTTAAAGTCGGCTTTAATTATTTTTATTCTTTATTTCGTACCAAAGATTTTGTCACCGGCATCGCCGAGGCCCGGAATAATGTATCCGTGCTCGTTCAGTCCCTGATCAATCGATGCGGTATACAGTTCGACGTCCGGGTGCGCTTTTTCCAGCGCAGCGATACCTTCTGGCGCAGCTACCAGCACCAGAACTTTGATGCTGCTGCAGCCCGCT  >  NC_000913/2620165‑2620429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A