Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,620,907	(A)_8→9	intergenic (‑35/‑290)	upp ← / → purM	uracil phosphoribosyltransferase/phosphoribosylformylglycinamide cyclo‑ligase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,620,899	1	.	A	100.0%	304.0 / NA	84	intergenic (‑27/‑298)	upp/purM	uracil phosphoribosyltransferase/phosphoribosylformylglycinamide cyclo‑ligase
Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (42/42); total (42/42)

AGGCTACCCACTTCGGAAGCGAGTTCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCAC‑‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTTATATTCAGATGGTTATGAAAGAAGATTATTCCATCC  >  NC_000913/2620760‑2621033

agGCTACCCACTTCGGAAGCGAGTTCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCcac                                                                                                                                          >  2:270474/1‑140 (MQ=255)

  gCTACCCACTTCGGAAGCGAGTTCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCAC‑‑aa                                                                                                                                      >  2:857191/1‑140 (MQ=255)

     aCCCACTTCGGAAGCGAGTTCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCAC‑‑aaaaa                                                                                                                                   >  2:1016446/1‑140 (MQ=255)

            tCGGAAGCGAGTTCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCAC‑‑aaaaaaaaatcg                                                                                                                            <  1:1297557/140‑5 (MQ=255)

            tCGGAAGCGAGTTCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCAC‑‑aaaaaaaaatcg                                                                                                                            <  1:965452/140‑5 (MQ=255)

            tCGGAAGCGAGTTCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCAC‑‑aaaaaaaaatcg                                                                                                                            <  1:270474/140‑5 (MQ=255)

               gAAGCGAGTTCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACg                                                                                                                          <  2:1323566/140‑1 (MQ=255)

               gAAGCGAGTTCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACg                                                                                                                          <  1:825804/140‑1 (MQ=255)

                aaGCGAGTTCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACgg                                                                                                                         <  1:1016446/140‑1 (MQ=255)

                 aGCGAGTTCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGa                                                                                                                        >  1:571835/1‑140 (MQ=255)

                   cGAGTTCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGAtt                                                                                                                      >  1:708053/1‑140 (MQ=255)

                     aGTTCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATtat                                                                                                                    >  2:901929/1‑140 (MQ=255)

                     aGTTCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATtat                                                                                                                    >  2:1631326/1‑140 (MQ=255)

                       ttCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACgg                                                                                                                         <  2:257398/133‑1 (MQ=255)

                       ttCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACgg                                                                                                                         >  1:257398/1‑133 (MQ=255)

                       ttCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATAc                                                                                                                  <  1:1252164/140‑1 (MQ=255)

                       ttCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATAc                                                                                                                  <  1:824259/140‑1 (MQ=255)

                        tCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATAc                                                                                                                  >  2:1277467/1‑139 (MQ=255)

                        tCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATAc                                                                                                                  <  1:1277467/139‑1 (MQ=255)

                          gcgAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATAcctc                                                                                                               <  1:1601297/140‑1 (MQ=255)

                            gAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATAcctcct                                                                                                             <  2:571835/140‑1 (MQ=255)

                                   cTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCa                                                                                                      >  2:190043/1‑140 (MQ=255)

                                      ggTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAgg                                                                                                   <  1:1068407/140‑1 (MQ=255)

                                          cTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAggcggc                                                                                               <  2:1461857/140‑1 (MQ=255)

                                             atatCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGATGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTttcttc                                                                                                       <  2:1523246/129‑1 (MQ=255)

                                             atatCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGATGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTttcttc                                                                                                       >  1:1523246/1‑129 (MQ=255)

                                                  ttGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACAAAAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTc                                                                                        <  2:1372748/140‑1 (MQ=255)

                                                  ttGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCt                                                                                       >  1:42429/1‑140 (MQ=255)

                                                  ttGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCt                                                                                       >  1:1549768/1‑140 (MQ=255)

                                                  ttGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCt                                                                                       >  2:1395767/1‑140 (MQ=255)

                                                   tGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCtt                                                                                      <  1:901929/140‑1 (MQ=255)

                                                    gCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCttt                                                                                     >  1:850211/1‑140 (MQ=255)

                                                     cTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCtttt                                                                                    >  1:620185/1‑140 (MQ=255)

                                                       cACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAat                                                                                            >  2:347144/1‑130 (MQ=255)

                                                       cACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAat                                                                                            <  1:347144/130‑1 (MQ=255)

                                                        aCGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCttt                                                                                     >  1:1108662/1‑136 (MQ=255)

                                                        aCGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCttt                                                                                     <  2:1108662/136‑1 (MQ=255)

                                                         cGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACAAAAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGt                                                                                 >  2:53295/1‑140 (MQ=255)

                                                         cGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGtt                                                                                >  1:1387118/1‑140 (MQ=255)

                                                                  cccAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGt                                                                       <  1:1631326/140‑1 (MQ=255)

                                                                    cAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCt                                                                                       <  2:712744/122‑1 (MQ=255)

                                                                    cAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCt                                                                                       >  1:712744/1‑122 (MQ=255)

                                                                           tgtTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACAAAAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGa                                                               >  1:500499/1‑140 (MQ=255)

                                                                           tgtTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGtt                                                                                >  1:867191/1‑122 (MQ=255)

                                                                           tgtTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGtt                                                                                >  1:440973/1‑122 (MQ=255)

                                                                           tgtTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGtt                                                                                <  2:440973/122‑1 (MQ=255)

                                                                           tgtTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGtt                                                                                <  2:867191/122‑1 (MQ=255)

                                                                           tgtTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGt                                                                       >  2:1637025/1‑131 (MQ=255)

                                                                           tgtTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGt                                                                       <  1:1637025/131‑1 (MQ=255)

                                                                           tgtTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGAt                                                              >  1:834742/1‑140 (MQ=255)

                                                                           tgtTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGAt                                                              <  2:1549768/140‑1 (MQ=255)

                                                                           tgtTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGAt                                                              <  2:35433/140‑1 (MQ=255)

                                                                           tgtTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGAt                                                              >  1:665116/1‑140 (MQ=255)

                                                                             tttGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGt                                                                       <  1:725348/129‑1 (MQ=255)

                                                                             tttGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGt                                                                       >  2:725348/1‑129 (MQ=255)

                                                                             tttGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATaa                                                            <  2:556191/140‑1 (MQ=255)

                                                                                     gTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTga                                                    >  1:466085/1‑140 (MQ=255)

                                                                                     gTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTga                                                    >  2:1493574/1‑140 (MQ=255)

                                                                                     gTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTga                                                    >  1:1699037/1‑140 (MQ=255)

                                                                                       gggTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTgaga                                                  >  2:456187/1‑140 (MQ=255)

                                                                                         gtgtTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATa                                                <  1:190043/140‑1 (MQ=255)

                                                                                          tgtTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATaa                                               <  1:857191/140‑1 (MQ=255)

                                                                                            tttGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATa                                                >  1:478306/1‑137 (MQ=255)

                                                                                            tttGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATa                                                <  2:478306/137‑1 (MQ=255)

                                                                                            tttGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAg                                             >  2:320057/1‑140 (MQ=255)

                                                                                            tttGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAg                                             <  1:456187/140‑1 (MQ=255)

                                                                                            tttGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAg                                             >  1:1500721/1‑140 (MQ=255)

                                                                                            tttGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAg                                             <  2:708053/140‑1 (MQ=255)

                                                                                            tttGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAg                                             <  1:320057/140‑1 (MQ=255)

                                                                                            tttGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAg                                             <  2:665116/140‑1 (MQ=255)

                                                                                              tGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGtt                                           <  2:620185/140‑1 (MQ=255)

                                                                                               gACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACAAAAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGtt                                           <  1:53295/140‑1 (MQ=255)

                                                                                                    ccACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTta                                     >  2:400395/1‑140 (MQ=255)

                                                                                                    ccACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTta                                     >  1:60647/1‑140 (MQ=255)

                                                                                                      aCGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTtata                                   <  2:466085/140‑1 (MQ=255)

                                                                                                          tCTTCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTTATATTCa                               <  2:60647/140‑1 (MQ=255)

                                                                                                            ttCATACTCTTTCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGAC‑TTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTTATATTCAGAt                            <  2:850211/140‑1 (MQ=255)

                                                                                                                     tttCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAACGTTATTTTATATTCAGATGGTTATGa                    >  1:1195073/1‑140 (MQ=255)

                                                                                                                     tttCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTTATATTCAGATGGTTATGa                    >  2:67226/1‑140 (MQ=255)

                                                                                                                     tttCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTTATATTCAGATGGTTATGa                    >  2:1344511/1‑140 (MQ=255)

                                                                                                                     tttCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTTATATTCAGATGGTTATGa                    >  1:409805/1‑140 (MQ=255)

                                                                                                                      ttCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTTATATTCAg                              >  1:1639987/1‑129 (MQ=255)

                                                                                                                      ttCTCCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTTATATTCAg                              <  2:1639987/129‑1 (MQ=255)

                                                                                                                       tctcCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTTATATTCAGATGGTTATGaaa                  >  2:457111/1‑140 (MQ=255)

                                                                                                                       tctcCTTTGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTTATATTCAGATGGTTATGaaa                  <  2:42429/140‑1 (MQ=255)

                                                                                                                        ctcCTTTGAGGGGCAGCCACAAAAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTTATATTCAGATGGTTATGaaa                  <  2:500499/140‑1 (MQ=255)

                                                                                                                             ttGAGGGGCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTTATATTCAGATGGTTATGAAAGAAGat            >  2:1660182/1‑140 (MQ=255)

                                                                                                                                  gggCAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTTATATTCAGATGGTTATGAAAGAAGATTATTc       <  2:1195073/140‑1 (MQ=255)

                                                                                                                                     cAGCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTTATATTCAGATGGTTTTGAAAGAAGATTATTCAAt    >  1:1187669/1‑140 (MQ=255)

                                                                                                                                       gCCACA‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTTATATTCAGATGGTTATGAAAGAAGATTATTCCATcc  <  2:1500721/140‑1 (MQ=255)

AGGCTACCCACTTCGGAAGCGAGTTCGCGAAAGCGCTTGGTGCTGATATCTTGCTCACGCATCAGTCCCAGCTTGTGTTTGACGAGTGGGTGTTTGACTTCCACGATCTTCATACTCTTTCTCCTTTGAGGGGCAGCCAC‑‑AAAAAAAATCGACGGATTATACCTCCTTTCTTCAAGGCGGCAATATTCTTTTCGTTGACTTTAGTCAAAATGATAACGGTTTGAGATAAAGTTATTTTATATTCAGATGGTTATGAAAGAAGATTATTCCATCC  >  NC_000913/2620760‑2621033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A