Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	183	98.6	3427438	96.9%	3321187	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,641,969	T→C	A292A (GCA→GCG)	rodZ ←	transmembrane component of cytoskeleton

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,641,969	0	T	C	100.0%	258.7 / NA	70	A292A (GCA→GCG)	rodZ	transmembrane component of cytoskeleton
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (37/33); total (37/33)

CGCCGGTGATTGTTCGGCATTGAGGGTCAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGTGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAGCGCATTCGGATCAGCCACCGGC  >  NC_000913/2641837‑2642104

cgcCGGTGATTGTTCGGCATTGAGGGTCAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGc                                                                                                                                  >  2:867302/1‑140 (MQ=255)

cgcCGGTGATTGTTCGGCATTGAGGGTCAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGc                                                                                                                                  <  2:194618/140‑1 (MQ=255)

cgcCGGTGATTGTTCGGCATTGAGGGTCAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGc                                                                                                                                  <  2:616171/140‑1 (MQ=255)

    ggTGATTGTTCGGCATTGAGGGTCAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGt                                                                                                                              >  1:654334/1‑140 (MQ=255)

    ggTGATTGTTCGGCATTGAGGGTCAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGt                                                                                                                              >  1:1236168/1‑140 (MQ=255)

     gTGATTGTTCGGCATTGAGGGTCAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGtt                                                                                                                             <  2:1236168/140‑1 (MQ=255)

     gTGATTGTTCGGCATTGAGGGTCAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGtt                                                                                                                             >  1:1680626/1‑140 (MQ=255)

                  aTTGAGGGTCAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTAc                                                                                                                <  1:1086247/140‑1 (MQ=255)

                  aTTGAGGGTCAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTAc                                                                                                                <  1:1211503/140‑1 (MQ=255)

                      aGGGTCAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTc                                                                                                            >  1:1418965/1‑140 (MQ=255)

                       gggTCAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCt                                                                                                           <  2:202925/140‑1 (MQ=255)

                       gggTCAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCt                                                                                                           <  1:62500/140‑1 (MQ=255)

                       gggTCAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCt                                                                                                           <  1:867302/140‑1 (MQ=255)

                           cAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTAc                                                                                                       >  2:489987/1‑140 (MQ=255)

                           cAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTAc                                                                                                       >  1:1638246/1‑140 (MQ=255)

                           cAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTAc                                                                                                       >  1:552689/1‑140 (MQ=255)

                            aGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACg                                                                                                      <  1:1307380/140‑1 (MQ=255)

                             gACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCATTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCt                                                                                                           <  2:811864/134‑1 (MQ=255)

                             gACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCATTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCt                                                                                                           >  1:811864/1‑134 (MQ=255)

                                   cAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATa                                                                                               >  2:244271/1‑140 (MQ=255)

                                      ccTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCg                                                                                            >  2:581575/1‑140 (MQ=255)

                                            tAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAAc                                                                                      >  1:1403828/1‑140 (MQ=255)

                                                 cTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAAttt                                                                                 >  1:1045864/1‑140 (MQ=255)

                                                    aTAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTaaa                                                                                       >  2:915997/1‑131 (MQ=255)

                                                    aTAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTaaa                                                                                       <  1:915997/131‑1 (MQ=255)

                                                     tAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTa                                                                             <  2:1638246/140‑1 (MQ=255)

                                                     tAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTa                                                                             <  2:1403828/140‑1 (MQ=255)

                                                       aaaCGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTAcc                                                                           <  2:1418965/140‑1 (MQ=255)

                                                         aCGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCgg                                                                         >  2:1648039/1‑140 (MQ=255)

                                                            aCTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAg                                                                      <  1:9014/140‑1 (MQ=255)

                                                              tCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCa                                                                    <  1:1648039/140‑1 (MQ=255)

                                                              tCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCa                                                                    >  2:1444804/1‑140 (MQ=255)

                                                                 gATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCa                                                                 <  2:518683/140‑1 (MQ=255)

                                                                  aTCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAg                                                                >  1:842347/1‑140 (MQ=255)

                                                                       cAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGt                                                                        >  1:565775/1‑127 (MQ=255)

                                                                       cAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGt                                                                        <  2:565775/127‑1 (MQ=255)

                                                                       cAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGAcc                                                           >  2:554610/1‑140 (MQ=255)

                                                                                     tACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATc                                             >  2:332270/1‑140 (MQ=255)

                                                                                          gATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAg                                        >  2:93494/1‑140 (MQ=255)

                                                                                          gATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAg                                        >  1:1146843/1‑140 (MQ=255)

                                                                                          gATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAg                                        >  1:612765/1‑140 (MQ=255)

                                                                                             cTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTaa                                     <  1:1280886/140‑1 (MQ=255)

                                                                                             cTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTaa                                     <  1:415342/140‑1 (MQ=255)

                                                                                               gTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCa                                                >  1:29290/1‑127 (MQ=255)

                                                                                               gTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCa                                                <  2:29290/127‑1 (MQ=255)

                                                                                               gTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAg                                   >  1:1543320/1‑140 (MQ=255)

                                                                                                tACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGt                                  >  1:1151625/1‑140 (MQ=255)

                                                                                                tACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGt                                  >  2:1482284/1‑140 (MQ=255)

                                                                                                tACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGt                                  >  2:44416/1‑140 (MQ=255)

                                                                                                 aCTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGtt                                 <  1:489987/140‑1 (MQ=255)

                                                                                                     cGGCTGGCGCTCCAATTTTCAGTTTGTACGGGGCCTGGCCGGGTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCCAAACAATTTTTTACCGGTAGCATCAGTGTCCTCCAGCCAGCAATCCGCAGTAAAGTtcatt                             >  2:503420/1‑139 (MQ=255)

                                                                                                     cGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGt                                  <  1:477996/135‑1 (MQ=255)

                                                                                                     cGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGt                                  >  2:477996/1‑135 (MQ=255)

                                                                                                     cGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTtcatc                             >  2:932536/1‑140 (MQ=255)

                                                                                                     cGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTtcatc                             >  1:794538/1‑140 (MQ=255)

                                                                                                     cGGCTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTtcatc                             >  1:347437/1‑140 (MQ=255)

                                                                                                        cTGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAA‑AATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCa                         >  1:30305/1‑140 (MQ=255)

                                                                                                         tGGCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCa                         <  1:1482284/140‑1 (MQ=255)

                                                                                                          ggCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAg                        >  1:665578/1‑140 (MQ=255)

                                                                                                          ggCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAg                        >  1:1638749/1‑140 (MQ=255)

                                                                                                          ggCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAg                        >  1:811512/1‑140 (MQ=255)

                                                                                                          ggCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAg                        >  1:542138/1‑140 (MQ=255)

                                                                                                          ggCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAg                        <  2:842347/140‑1 (MQ=255)

                                                                                                          ggCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAg                        <  2:794538/140‑1 (MQ=255)

                                                                                                          ggCGCACCAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAg                        <  2:1146843/140‑1 (MQ=255)

                                                                                                                ccAATTTTCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAGCGCAtt                  <  1:93494/140‑1 (MQ=255)

                                                                                                                      ttCAGTTTGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAGCGCATTCGGATc            <  1:1444804/140‑1 (MQ=255)

                                                                                                                           tttGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAGCGCATTCGGATCAGCCa       <  1:554610/140‑1 (MQ=255)

                                                                                                                           tttGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAGCGCATTCGGATCAGCCa       <  2:1611310/140‑1 (MQ=255)

                                                                                                                           tttGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAGCGCATTCGGATCAGCCa       >  2:226220/1‑140 (MQ=255)

                                                                                                                            ttGTACGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAGCGCATTCGGATCAGCCAc      <  2:542138/140‑1 (MQ=255)

                                                                                                                                aCGGCGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAGCGCATTCGGATCAGCCACCGGc  <  1:932536/140‑1 (MQ=255)

CGCCGGTGATTGTTCGGCATTGAGGGTCAGACGCGCAACCTGGTTAGTTCTGATAAAACGACTCAGATCGACAGGTTTCCCTTGATACTGGATCTGTACTGCGGCTGGCGCACCAATTTTCAGTTTGTACGGTGCCTGGCCGGTTAAGTTCAAATTACCGTCTTTACGCTGCATACCGCTAAACAATTTTTTACCGGTAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAGCGCATTCGGATCAGCCACCGGC  >  NC_000913/2641837‑2642104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A