Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,688,029 G→A P259S (CCG→TCG)  glrR ← DNA‑binding transcriptional activator GlrR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,688,0290GA100.0% 249.5 / NA 71P259S (CCG→TCG) glrRDNA‑binding transcriptional activator GlrR
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (35/36);  total (35/36)

ATTTTCAGGCTGACAACGTTGAGGCGGTAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGGGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTCGCGATTGCTGACAG  >  NC_000913/2687893‑2688157
                                                                                                                                        |                                                                                                                                
aTTTTCAGGCTGACAACGTTGAGGCGGTAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCagcgagcg                                                                                                                               >  2:1237942/1‑140 (MQ=255)
aTTTTCAGGCTGACAACGTTGAGGCGGTAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCagcgagcg                                                                                                                               <  1:1237942/140‑1 (MQ=255)
 ttttCAGGCTGACAACGTTGAGGCGGTAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAgcgc                                                                                                                              <  1:1644400/140‑1 (MQ=255)
   ttCAGGCTGACAACGTTGAGGCGGTAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCAc                                                                                                                            >  1:1283002/1‑140 (MQ=255)
       ggCTGACAACGTTGAGGCGGTAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTa                                                                                                                        <  1:88985/140‑1 (MQ=255)
       ggCTGACAACGTTGAGGCGGTAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTa                                                                                                                        <  2:337496/140‑1 (MQ=255)
       ggCTGACAACGTTGAGGCGGTAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTa                                                                                                                        <  1:467012/140‑1 (MQ=255)
       ggCTGACAACGTTGAGGCGGTAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTa                                                                                                                        <  1:464787/140‑1 (MQ=255)
       ggCTGACAACGTTGAGGCGGTAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTa                                                                                                                        <  2:821414/140‑1 (MQ=255)
       ggCTGACAACGTTGAGGCGGTAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTa                                                                                                                        <  1:1410960/140‑1 (MQ=255)
           gACAACGTTGAGGCGGTAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCt                                                                                                                    >  2:1646951/1‑140 (MQ=255)
                  ttGAGGCGGTAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCaa                                                                                                             >  1:1254348/1‑140 (MQ=255)
                      ggCGGTAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACAcg                                                                                                         <  1:1005105/140‑1 (MQ=255)
                      ggCGGTAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACAcg                                                                                                         >  1:342636/1‑140 (MQ=255)
                          gTAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCgca                                                                                                     <  1:99812/140‑1 (MQ=255)
                           tAATAGAGATCTTCGCGGGATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCgcag                                                                                                    >  2:190481/1‑140 (MQ=255)
                           tAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCgcag                                                                                                    >  2:12877/1‑140 (MQ=255)
                               agagATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGt                                                                                                <  1:12877/140‑1 (MQ=255)
                                gagaTCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGtt                                                                                               <  2:1559914/140‑1 (MQ=255)
                                  gaTCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTg                                                                                             <  1:898267/140‑1 (MQ=255)
                                    tCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCGATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGAc                                                                                           <  1:539917/140‑1 (MQ=255)
                                    tCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGAc                                                                                           <  1:694765/140‑1 (MQ=255)
                                    tCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGAc                                                                                           <  1:235211/140‑1 (MQ=255)
                                     cTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGGAACACGCGCAGCAGTTTGAcc                                                                                          >  2:1556845/1‑140 (MQ=255)
                                     cTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAac                                                                                                            <  2:1441452/122‑1 (MQ=255)
                                     cTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAac                                                                                                            >  1:1441452/1‑122 (MQ=255)
                                     cTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGAcc                                                                                          >  2:729735/1‑140 (MQ=255)
                                     cTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGAcc                                                                                          >  1:1229254/1‑140 (MQ=255)
                                        cgcgGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGt                                                                                       >  2:448341/1‑140 (MQ=255)
                                         gcgGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTa                                                                                      >  1:1623923/1‑140 (MQ=255)
                                          cgGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTaa                                                                                     <  1:1276689/140‑1 (MQ=255)
                                          cgGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTaa                                                                                     <  2:332602/140‑1 (MQ=255)
                                          cgGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTaa                                                                                     <  1:1421750/140‑1 (MQ=255)
                                           ggAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAAc                                                                                    <  2:1254348/140‑1 (MQ=255)
                                              aTTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGgc                                                                                 <  2:925097/140‑1 (MQ=255)
                                               ttCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGgcg                                                                                <  1:1202966/140‑1 (MQ=255)
                                                       gcgcCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCata                                                                        >  2:1001898/1‑140 (MQ=255)
                                                          ccATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCg                                                                     >  2:680352/1‑140 (MQ=255)
                                                                   ttGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCa                                                            <  1:680352/140‑1 (MQ=255)
                                                                   ttGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCa                                                            <  1:729735/140‑1 (MQ=255)
                                                                       cAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCga                                                        >  2:1701829/1‑140 (MQ=255)
                                                                           tCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGaaa                                                    <  1:1556845/140‑1 (MQ=255)
                                                                                  gAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGtt                                             <  1:830929/140‑1 (MQ=255)
                                                                                  gAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGtt                                             <  1:1239597/140‑1 (MQ=255)
                                                                                   aGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGttc                                            >  1:1201616/1‑140 (MQ=255)
                                                                                    gTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGttcc                                           >  1:602963/1‑140 (MQ=255)
                                                                                    gTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGttcc                                           >  2:1015489/1‑140 (MQ=255)
                                                                                     tGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGttccg                                          >  1:1227979/1‑140 (MQ=255)
                                                                                     tGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGttccg                                          >  2:320384/1‑140 (MQ=255)
                                                                                      ggCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGttccgc                                         >  1:1620530/1‑140 (MQ=255)
                                                                                         aGAAATAATCCGCACATTGATATCAATATCGCGGTTACTCCCCCGCGGGCGCACTTAACGCTCCTGCAACACGCGCACCAGTTTGACCTGTAACGGCGCAGTCATCTCGCCAATTTCATCGAGAAATAGCGttccgcctt                                      >  2:477887/1‑140 (MQ=255)
                                                                                            aataatCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGttccgccttccg                                   <  2:342636/140‑1 (MQ=255)
                                                                                                atCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCcgccgc                               >  2:1627036/1‑140 (MQ=255)
                                                                                                 tCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCgccgcc                              <  2:1283002/140‑1 (MQ=255)
                                                                                                 tCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCgccgcc                              <  1:435807/140‑1 (MQ=255)
                                                                                                 tCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCgccgcc                              <  1:1701829/140‑1 (MQ=255)
                                                                                                 tCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCgccgcc                              <  1:1646951/140‑1 (MQ=255)
                                                                                                        aTTGATATCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCATGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATa                       >  2:878119/1‑140 (MQ=255)
                                                                                                              atCAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCtt                 <  2:1623923/140‑1 (MQ=255)
                                                                                                                cAATATCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTcg               <  1:320384/140‑1 (MQ=255)
                                                                                                                   tatCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTCGCGa            >  2:165391/1‑140 (MQ=255)
                                                                                                                    atCGCGGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTCGCGAt           >  1:71327/1‑140 (MQ=255)
                                                                                                                      cgcgGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTCGCGATTg         >  2:181468/1‑140 (MQ=255)
                                                                                                                      cgcgGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTCGCGATTg         >  1:878580/1‑140 (MQ=255)
                                                                                                                      cgcgGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTCGCGATTg         >  1:793814/1‑140 (MQ=255)
                                                                                                                      cgcgGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTCGCGATTg         >  1:327425/1‑140 (MQ=255)
                                                                                                                        cgGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTCGCGATTGCt       >  2:384500/1‑140 (MQ=255)
                                                                                                                        cgGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTCGCGATTGCt       >  1:1364911/1‑140 (MQ=255)
                                                                                                                        cgGTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTCGCGATTGCt       >  1:1049912/1‑140 (MQ=255)
                                                                                                                        cgGTTACTGCCCAGCGAGCGCAC‑TTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTCGCGATTGCTg      >  2:798443/1‑140 (MQ=255)
                                                                                                                         ggTTACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTCGCGATTGCTg      <  1:1569080/140‑1 (MQ=255)
                                                                                                                           ttACTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTCGCGATTGCTGAc    >  1:432220/1‑140 (MQ=255)
                                                                                                                             aCTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCGTCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTCGCGATTGCTGACAg  >  2:1498527/1‑140 (MQ=255)
                                                                                                                             aCTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTCGCGATTGCTGACAg  <  1:181468/140‑1 (MQ=255)
                                                                                                                             aCTGCCCAGCGAGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTCGCGATTGCTGACAg  >  1:1169637/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                
ATTTTCAGGCTGACAACGTTGAGGCGGTAATAGAGATCTTCGCGGAATTCCCCGCGCGCCATCGCTTTTGGCAGATCACGGTGAGTGGCAGAAATAATCCGCACATTGATATCAATATCGCGGTTACTGCCCAGCGGGCGCACTTTACGCTCCTGCAACACGCGCAGCAGTTTGACCTGTAACGGCGCAGGCATATCGCCAATTTCATCGAGAAATAGCGTTCCGCCTTCCGCCGCCTGGAATAAACCTTCGCGATTGCTGACAG  >  NC_000913/2687893‑2688157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A