Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 183 98.6 3427438 96.9% 3321187 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,768,019 T→C Y104H (TAT→CAT)  yfjP → CP4‑57 prophage; putative GTP‑binding protein YfjP

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,768,0190TC100.0% 348.8 / NA 94Y104H (TAT→CAT) yfjPCP4‑57 prophage; putative GTP‑binding protein YfjP
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (45/49);  total (45/49)

CGGTGAAGTATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGCATAAGATGC  >  NC_000913/2767883‑2768154
                                                                                                                                        |                                                                                                                                       
cGGTGAAGTATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCAtg                                                                                                                                      >  1:740412/1‑140 (MQ=255)
cGGTGAAGTATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCAtg                                                                                                                                      <  1:1034058/140‑1 (MQ=255)
cGGTGAAGTATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCAtg                                                                                                                                      <  2:1702300/140‑1 (MQ=255)
cGGTGAAGTATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCAtg                                                                                                                                      >  2:1193047/1‑140 (MQ=255)
cGGTGAAGTATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCAtg                                                                                                                                      <  2:649751/140‑1 (MQ=255)
cGGTGAAGTATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCAtg                                                                                                                                      <  1:423010/140‑1 (MQ=255)
  gagAAGTATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCAtgct                                                                                                                                    >  2:1433685/3‑140 (MQ=255)
   tGAAGTATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCAtgctg                                                                                                                                   >  2:1396480/1‑140 (MQ=255)
     aaGTATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTgcg                                                                                                                                 >  2:1197750/1‑140 (MQ=255)
     aaGTATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTgcg                                                                                                                                 <  1:1197750/140‑1 (MQ=255)
            gCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTAcc                                                                                                                          >  1:1034692/1‑140 (MQ=255)
            gCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTAcc                                                                                                                          >  2:204535/1‑140 (MQ=255)
                 tCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGaa                                                                                                                     >  1:133189/1‑140 (MQ=255)
                    gCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGaacaa                                                                                                                  <  1:1414908/140‑1 (MQ=255)
                               gCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGNNTGCTGCGCTGTACCGCGAACAACTACCCCGGCt                                                                                                       <  1:389236/140‑1 (MQ=255)
                               gCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCt                                                                                                       <  1:1181255/140‑1 (MQ=255)
                                    tACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGAcc                                                                                                  >  1:327753/1‑140 (MQ=255)
                                         gTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGAtt                                                                                             >  2:175047/1‑140 (MQ=255)
                                         gTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGAtt                                                                                             >  1:138274/1‑140 (MQ=255)
                                          tGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTc                                                                                            >  2:749244/1‑140 (MQ=255)
                                            aTCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCtg                                                                                          >  2:260742/1‑140 (MQ=255)
                                              ccTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCt                                                                                                       >  2:172444/1‑125 (MQ=255)
                                              ccTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCt                                                                                                       <  1:172444/125‑1 (MQ=255)
                                              ccTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCtgtg                                                                                        >  1:136032/1‑140 (MQ=255)
                                              ccTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCtgtg                                                                                        <  1:1289585/140‑1 (MQ=255)
                                              ccTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCtgtg                                                                                        >  1:1664855/1‑140 (MQ=255)
                                              ccTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCtgtg                                                                                        <  1:605139/140‑1 (MQ=255)
                                              ccTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCtgtg                                                                                        >  1:1246205/1‑140 (MQ=255)
                                              ccTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCtgtg                                                                                        >  1:11344/1‑140 (MQ=255)
                                              ccTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCtgtg                                                                                        >  1:468831/1‑140 (MQ=255)
                                              ccTTTACGCTTTCGCCTGAAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCtgtg                                                                                        >  1:277894/1‑140 (MQ=255)
                                               cTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTgg                                                                                       <  2:133189/140‑1 (MQ=255)
                                               cTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTgg                                                                                       <  1:1433685/140‑1 (MQ=255)
                                                 ttACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCt                                                                                     >  2:1243045/1‑140 (MQ=255)
                                                   aCGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGa                                                                                   >  2:977081/1‑140 (MQ=255)
                                                   aCGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGa                                                                                   >  1:476098/1‑140 (MQ=255)
                                                   aCGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGa                                                                                   >  2:867418/1‑140 (MQ=255)
                                                     gCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGAtt                                                                                 <  2:476098/140‑1 (MQ=255)
                                                      cTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTa                                                                                <  1:12747/140‑1 (MQ=255)
                                                      cTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTa                                                                                <  1:1193047/140‑1 (MQ=255)
                                                      cTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTa                                                                                <  1:749244/140‑1 (MQ=255)
                                                      cTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCCCGACCTGATTCTGTGGCTGATTa                                                                                <  2:1034692/140‑1 (MQ=255)
                                                       tttCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGAt                                                                                  >  2:700097/1‑137 (MQ=255)
                                                       tttCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGAt                                                                                  <  1:700097/137‑1 (MQ=255)
                                                        ttCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTa                                                                                >  1:1363912/1‑138 (MQ=255)
                                                        ttCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTa                                                                                <  2:1363912/138‑1 (MQ=255)
                                                          cGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGc                                                                            <  2:468831/140‑1 (MQ=255)
                                                          cGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGc                                                                            <  1:1030277/140‑1 (MQ=255)
                                                          cGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGc                                                                            <  1:1459504/140‑1 (MQ=255)
                                                           gCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTTATTCTGTGGCTGATTa                                                                                <  2:922879/135‑1 (MQ=255)
                                                           gCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTTATTCTGTGGCTGATTa                                                                                >  1:922879/1‑135 (MQ=255)
                                                                cAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCtgatga                                                                      <  1:580451/140‑1 (MQ=255)
                                                                  gATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATc                                                                    <  1:175047/140‑1 (MQ=255)
                                                                       gagaACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCa                                                               <  2:327753/140‑1 (MQ=255)
                                                                       gagaACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCa                                                               <  1:1396480/140‑1 (MQ=255)
                                                                         gaACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACt                                                             <  1:658153/140‑1 (MQ=255)
                                                                             acTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTTTGGGTGAATAAGGCTGATTATCGGGCACTGGCg                                                         >  2:559725/1‑140 (MQ=21)
                                                                             acTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCg                                                         >  2:77426/1‑140 (MQ=255)
                                                                               tttATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGAc                                                       >  1:1257756/1‑140 (MQ=255)
                                                                                 tATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACtg                                                     >  2:1029515/1‑140 (MQ=255)
                                                                                    gACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACtgatg                                                  <  1:1027601/140‑1 (MQ=255)
                                                                                     aCCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACtgatga                                                 <  1:867418/140‑1 (MQ=255)
                                                                                     aCCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACtgatga                                                 <  1:977081/140‑1 (MQ=255)
                                                                                      ccATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAg                                                >  1:95581/1‑140 (MQ=255)
                                                                                       cATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGc                                               >  1:1055038/1‑140 (MQ=255)
                                                                                       cATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGc                                               >  1:1321552/1‑140 (MQ=255)
                                                                                         tCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCa                                              <  1:636814/139‑1 (MQ=255)
                                                                                         tCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCa                                              >  2:636814/1‑139 (MQ=255)
                                                                                         tCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCAt                                             >  1:730887/1‑140 (MQ=255)
                                                                                             ggATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCAttttt                                         <  2:730887/140‑1 (MQ=255)
                                                                                               aTCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTAc                                       <  1:1292896/140‑1 (MQ=255)
                                                                                                tCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTAcc                                      <  2:71949/140‑1 (MQ=255)
                                                                                                  tGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGt                                    <  2:11344/140‑1 (MQ=255)
                                                                                                   gCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCGGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTc                                   >  1:756448/1‑140 (MQ=255)
                                                                                                   gCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTc                                   >  2:1372830/1‑140 (MQ=255)
                                                                                                    cccGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTa                                        >  1:1265879/1‑134 (MQ=255)
                                                                                                    cccGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTa                                        <  2:1265879/134‑1 (MQ=255)
                                                                                                    accGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCa                                  >  2:312417/2‑140 (MQ=255)
                                                                                                         cGTGGGCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGa                             >  1:552493/1‑140 (MQ=255)
                                                                                                             ggCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTgg                         >  2:1122817/1‑140 (MQ=255)
                                                                                                              gCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGc                        >  1:518/1‑140 (MQ=255)
                                                                                                              gCGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGc                        >  1:909715/1‑140 (MQ=255)
                                                                                                               cGAAAGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCg                       <  2:802944/140‑1 (MQ=255)
                                                                                                                  aaGTGGCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAg                    <  1:1122817/140‑1 (MQ=255)
                                                                                                                      ggCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATa                <  1:976411/140‑1 (MQ=255)
                                                                                                                       gCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATAc               <  1:1243045/140‑1 (MQ=255)
                                                                                                                       gCGTTCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATAc               <  2:1055038/140‑1 (MQ=255)
                                                                                                                           tCGCGATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGc           <  2:740412/140‑1 (MQ=255)
                                                                                                                               gATACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGCATaa       <  2:552493/140‑1 (MQ=255)
                                                                                                                                 tACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATa                <  2:1157621/129‑1 (MQ=255)
                                                                                                                                 tACCGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATa                >  1:1157621/1‑129 (MQ=255)
                                                                                                                                   ccGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGCATAAGATg   <  2:1257756/140‑1 (MQ=255)
                                                                                                                                   ccGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGCATAAGATg   <  1:559725/140‑1 (MQ=255)
                                                                                                                                   ccGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGCATAAGATg   <  1:77426/140‑1 (MQ=255)
                                                                                                                                    cGAGCATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGCATAAGATGc  <  2:1246205/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
CGGTGAAGTATCGCCGGTCAGCGATGTAGCGGCCTGTACACGTGATCCTTTACGCTTTCGCCTGCAGATTGGAGAACACTTTATGACCATCGTGGATCTGCCCGGCGTGGGCGAAAGTGGCGTTCGCGATACCGAGTATGCTGCGCTGTACCGCGAACAACTTCCCCGGCTCGACCTGATTCTGTGGCTGATTAAGGCTGATGATCGGGCACTGGCGACTGATGAGCATTTTTACCGTCAGGTGATTGGCGAAGCATACCGGCATAAGATGC  >  NC_000913/2767883‑2768154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A