Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F28 I1 R1
|
183 |
98.6 |
3427438 |
96.9% |
3321187 |
138.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,847,474 |
G→A |
R590W (CGG→TGG) |
hycC ← |
formate hydrogenlyase subunit HycC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,847,474 | 0 | G | A | 98.9%
| 320.4
/ ‑4.5
| 92 | R590W (CGG→TGG) | hycC | formate hydrogenlyase subunit HycC |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (50/41); total (50/42) |
| Fisher's exact test for biased strand distribution p-value = 4.57e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
CGGGTTATACCGGAGAGCAGCGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCGGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCGTGAGCGGTAATCACCA > NC_000913/2847339‑2847608
|
ggggTTATACCGGAGAGCAGCGGCGCAACGGCAAATAACCCCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCCCCAGTACCGCCAGTTCAACCAGCGCCATCcagcgg < 2:1390429/139‑1 (MQ=255)
ggggTTATACCGGAGAGCAGCGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCCCCACCAGTACCGCCAGTTCAACCAGCGCCATCcagcgg < 2:459438/139‑1 (MQ=255)
ggTTATACCGGAGAGCAGCGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGaa < 1:744216/140‑1 (MQ=255)
ttATACCGGAGAGCAGCGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACa < 1:231112/140‑1 (MQ=255)
aCCGGAGAGCAGCGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCcagcgg > 1:540500/1‑132 (MQ=255)
aCCGGAGAGCAGCGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCcagcgg < 2:540500/132‑1 (MQ=255)
ggAGAGCAGCGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGc < 1:1360963/140‑1 (MQ=255)
gagaGCAGCGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCa < 1:70799/140‑1 (MQ=255)
ggagCAGGGGCGAAACGGCAAATAACCCCAGCGCCTGAATTACCGGATATAAAACCCTCTTTCTCAGGCCCCTCGTGAAAGAATAACCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCAc < 2:519090/139‑1 (MQ=255)
agagCAGCGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCCCCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCAc < 2:94791/140‑1 (MQ=255)
agagCAGCGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCAc > 2:1508299/1‑140 (MQ=255)
agagCAGCGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCAc > 2:1403575/1‑140 (MQ=255)
agagCAGCGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCAc > 2:1254285/1‑140 (MQ=255)
gagCAGCGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACt > 2:1637847/1‑140 (MQ=255)
agcagcGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTc > 2:1430892/1‑140 (MQ=255)
agcagcGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTc > 1:47608/1‑140 (MQ=255)
agcagcGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTc > 2:45496/1‑140 (MQ=255)
cagcGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCCCCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTccc < 1:45431/140‑1 (MQ=255)
cagcGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTccc > 1:1444548/1‑140 (MQ=255)
cagcGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTccc > 1:1280964/1‑140 (MQ=255)
gcggcgCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGTTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCt < 1:664236/140‑1 (MQ=255)
cggcgCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTc > 2:799659/1‑140 (MQ=255)
ggcgCAACGGCAAATAACCCCAGCGCCTAAATAAGCGGATATAAAACCCCCATTCTCAGGCCCCTCGTAAAACAATAATCCCCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCg < 2:583996/140‑1 (MQ=255)
ggcgCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCg < 1:799659/140‑1 (MQ=255)
ggcgCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCg < 1:45496/140‑1 (MQ=255)
ggcgCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCg < 1:1403575/140‑1 (MQ=255)
cAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGc < 2:410682/137‑1 (MQ=255)
cAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGc > 1:410682/1‑137 (MQ=255)
aTAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAACCCCCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCg < 2:417417/140‑1 (MQ=255)
acccccAGCCCCTGAATTAACGCAAATAAATCACCCATTCTCGGGCCCCCGGTTAACAAATAAGCCCCTCCATTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGc < 2:47608/136‑1 (MQ=255)
aaCACCAGCGCCTGAATTAACGGATATAAAACACTCTTTCTCAGGCTCCTCGTGAAACAATAACCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGc < 2:1152198/140‑1 (MQ=255)
ccTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCaga < 2:616419/136‑1 (MQ=255)
ccTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCaga > 1:616419/1‑136 (MQ=255)
tGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACAcc > 1:574888/1‑140 (MQ=255)
tGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACAcc > 2:1040370/1‑140 (MQ=255)
aaTTAGAGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAAGCACCACCAGTCCCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCgg < 2:1444548/140‑1 (MQ=255)
aTTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGa > 1:161174/1‑140 (MQ=255)
aCGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCa < 2:1501301/140‑1 (MQ=255)
cGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAg > 2:516695/1‑140 (MQ=255)
gATATAAAACACTCATTCTCCGGCTCCACGTGAAACAATAATCGCCACCAGGCCCGCCAGTTCAACCAGCGCCAACCGGCGGAACAGCAACGCGCTCCCCTCGCACTGCCAGCCCGGCCCCAGAGACACCGGATTCAGcc < 2:665707/140‑1 (MQ=255)
tataAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCCCCCCCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCAt < 2:799497/140‑1 (MQ=255)
tataAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCAt > 1:1054166/1‑140 (MQ=255)
cacTCATTCTCAGGCTCCTCGTGAAACAATAATCCCCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTa < 1:1646780/140‑1 (MQ=255)
cTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCAtt < 2:195744/132‑1 (MQ=255)
cTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCAtt > 1:195744/1‑132 (MQ=255)
tCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGt > 2:611495/1‑136 (MQ=255)
tCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGt < 1:611495/136‑1 (MQ=255)
tCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGtt > 1:1333844/1‑140 (MQ=255)
tCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGtt > 2:1080142/1‑140 (MQ=255)
tCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGAATTCAGCCATTTGCGTAGtt > 1:1052882/1‑140 (MQ=255)
aTTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGc < 1:1344002/132‑1 (MQ=255)
aTTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGc > 2:1344002/1‑132 (MQ=255)
aTTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTc > 2:483120/1‑140 (MQ=255)
ctcAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACT‑CCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCa > 1:1325387/1‑140 (MQ=255)
aGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCAcc > 2:1015016/1‑140 (MQ=255)
aGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCAcc > 2:1210406/1‑140 (MQ=255)
tcctcGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGgcg > 2:118414/1‑140 (MQ=255)
ctcGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCa > 1:351594/1‑140 (MQ=255)
ctcGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCa > 1:580106/1‑140 (MQ=255)
ctcGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACT‑CCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCaa > 2:1651541/1‑140 (MQ=255)
tGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACg < 1:1430892/140‑1 (MQ=255)
aaaCAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGcc > 2:417763/1‑140 (MQ=255)
aaaCAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGcc < 2:1280964/140‑1 (MQ=255)
aatCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCt < 1:359046/134‑1 (MQ=255)
aatCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCt > 2:359046/1‑134 (MQ=255)
accaccAGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCgg < 2:574888/140‑1 (MQ=255)
caccaGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCa < 2:962790/140‑1 (MQ=255)
caccaGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCa < 1:1254285/140‑1 (MQ=255)
caccaGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCa > 1:962790/1‑140 (MQ=255)
caccaGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCa < 1:516695/140‑1 (MQ=255)
accaGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCAt > 1:59476/1‑140 (MQ=255)
caGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCa < 2:1700383/137‑1 (MQ=255)
caGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCa > 1:1700383/1‑137 (MQ=255)
caGTACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATgg > 2:1582354/1‑140 (MQ=255)
tACCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCaa > 1:141001/1‑140 (MQ=255)
aCCGCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCaaa > 1:119263/1‑140 (MQ=255)
gCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAAcc > 1:1000830/1‑140 (MQ=255)
gCCAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAAcc > 1:752077/1‑140 (MQ=255)
ccAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCg > 2:677747/1‑140 (MQ=255)
ccAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCg > 1:193535/1‑140 (MQ=255)
ccAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCg > 2:623516/1‑140 (MQ=255)
ccAGTTCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCg > 1:1291478/1‑140 (MQ=255)
ttCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCGTGAg < 2:161174/140‑1 (MQ=255)
ttCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCGTGAg > 1:1086265/1‑140 (MQ=255)
ttCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCGTGAg < 2:141001/140‑1 (MQ=255)
ttCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCGTGAg > 1:848603/1‑140 (MQ=255)
tCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCGTGAGc > 1:1510997/1‑140 (MQ=255)
tCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCGTGAGc < 2:407510/140‑1 (MQ=255)
tCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCGTGAGc < 2:848603/140‑1 (MQ=255)
tCAACCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCGTGAGc > 1:1022494/1‑140 (MQ=255)
aCCAGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCGTGAGCGGt < 2:119263/140‑1 (MQ=255)
aGCGCCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCGTGAGCGGTAAt < 1:417763/140‑1 (MQ=255)
cgcCATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCGTGAGCGGTAATCa > 1:578218/1‑140 (MQ=255)
cATCCAGCGGAACAGCAACGCATTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCGTGAGCGGTAATCACCa < 1:1210406/140‑1 (MQ=255)
cATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCGTGAGCGGTAATCACCa < 2:1022494/140‑1 (MQ=255)
cATCCAGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCGTGAGCGGTAATCACCa < 1:483120/140‑1 (MQ=255)
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CGGGTTATACCGGAGAGCAGCGGCGCAACGGCAAATAACACCAGCGCCTGAATTAACGGATATAAAACACTCATTCTCAGGCTCCTCGTGAAACAATAATCACCACCAGTACCGCCAGTTCAACCAGCGCCATCCGGCGGAACAGCAACGCACTCCCCTCGCACTGCCAGCCCGGCACCAGAGACACCGGATTCAGCCATTTGCGTAGTTTCAGCACCGGCGCAAACGCCTGTTTCACCGGCATGGCAAAACCGTGAGCGGTAATCACCA > NC_000913/2847339‑2847608
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
